Wall clock time and date at job start Wed Apr 1 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47152 * 2 1 4 4 C 1.34776 * 119.99881 * 85.89242 * 3 2 1 5 5 O 1.21496 * 119.99418 * 185.45921 * 4 3 2 6 6 C 1.48322 * 120.00097 * 5.18153 * 4 3 2 7 7 N 1.31495 * 127.15604 * 356.61850 * 6 4 3 8 8 O 1.21435 * 111.52673 * 179.97438 * 7 6 4 9 9 C 1.33190 * 111.56591 * 0.03240 * 8 7 6 10 10 C 1.35368 * 106.63909 * 359.67688 * 9 8 7 11 11 C 1.50068 * 124.93924 * 179.83405 * 10 9 8 12 12 C 1.53543 * 108.16925 * 16.57348 * 11 10 9 13 13 H 1.09000 * 109.46676 * 70.59495 * 12 11 10 14 14 C 1.53003 * 109.45913 * 190.58223 * 12 11 10 15 15 C 1.53111 * 109.50943 * 310.58733 * 12 11 10 16 16 C 1.50605 * 129.59546 * 179.81131 * 9 8 7 17 17 C 1.46500 * 119.99746 * 265.89599 * 3 2 1 18 18 H 1.08998 * 110.64478 * 11.61535 * 17 3 2 19 19 C 1.55160 * 110.71880 * 248.27941 * 17 3 2 20 20 C 1.54907 * 101.58235 * 277.14129 * 19 17 3 21 21 N 1.47423 * 104.83222 * 322.98807 * 20 19 17 22 22 C 1.36937 * 125.64804 * 204.16515 * 21 20 19 23 23 H 1.08002 * 119.99629 * 179.97438 * 22 21 20 24 24 C 1.38805 * 120.00124 * 359.95930 * 22 21 20 25 25 N 1.31620 * 120.00329 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00131 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47242 * 89.99844 * 26 24 22 28 28 H 1.48496 * 109.47596 * 210.00234 * 26 24 22 29 29 H 1.48506 * 109.47065 * 329.99964 * 26 24 22 30 30 C 1.47029 * 108.70229 * 24.13133 * 21 20 19 31 31 H 1.08995 * 109.47307 * 300.00397 * 1 2 3 32 32 H 1.09000 * 109.46714 * 60.00442 * 1 2 3 33 33 H 1.09002 * 109.46850 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47045 * 239.99927 * 2 1 3 35 35 H 1.09000 * 109.46714 * 119.99558 * 2 1 3 36 36 H 1.08991 * 109.92066 * 256.80058 * 11 10 9 37 37 H 1.09006 * 109.59306 * 136.15189 * 11 10 9 38 38 H 1.08998 * 109.47259 * 180.02562 * 14 12 11 39 39 H 1.08997 * 109.46698 * 300.02923 * 14 12 11 40 40 H 1.08998 * 109.47177 * 60.03241 * 14 12 11 41 41 H 1.09003 * 109.42553 * 309.77905 * 15 12 11 42 42 H 1.08999 * 109.43109 * 189.93874 * 15 12 11 43 43 H 1.08997 * 109.69762 * 316.49226 * 16 9 8 44 44 H 1.08996 * 109.69643 * 77.08777 * 16 9 8 45 45 H 1.08999 * 110.99968 * 35.21618 * 19 17 3 46 46 H 1.08997 * 111.00330 * 159.06120 * 19 17 3 47 47 H 1.08998 * 110.36605 * 204.15433 * 20 19 17 48 48 H 1.09003 * 110.37064 * 81.82702 * 20 19 17 49 49 H 0.96993 * 120.00471 * 179.97438 * 25 24 22 50 50 H 1.09006 * 109.87777 * 239.52039 * 30 21 20 51 51 H 1.08992 * 109.88221 * 118.35876 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1642 2.0444 1.1642 5 8 2.4735 3.2193 1.1593 6 6 1.9410 1.3415 2.4511 7 7 1.5403 0.1004 2.6191 8 8 1.4526 -0.1840 3.7965 9 6 1.7871 0.8439 4.5746 10 6 2.1209 1.8630 3.7485 11 6 2.5612 3.2252 4.1985 12 6 2.9636 3.1340 5.6775 13 1 3.8929 2.5714 5.7671 14 6 3.1644 4.5430 6.2389 15 6 1.8593 2.4236 6.4650 16 6 1.8193 0.9396 6.0773 17 6 2.3482 2.0415 -1.2655 18 1 1.9868 1.4553 -2.1104 19 6 3.8765 2.2856 -1.3754 20 6 4.0404 3.5990 -0.5705 21 7 2.8366 4.3887 -0.8878 22 6 2.7327 5.7518 -0.8089 23 1 1.8029 6.2381 -1.0646 24 6 3.8222 6.5084 -0.4002 25 7 4.9551 5.9157 -0.0878 26 14 3.6807 8.3680 -0.2933 27 1 3.2196 8.7521 1.0651 28 1 5.0069 8.9815 -0.5578 29 1 2.7029 8.8488 -1.3023 30 6 1.7664 3.4703 -1.3037 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.7437 3.9367 4.0832 37 1 3.4161 3.5479 3.6041 38 1 3.4506 4.4785 7.2887 39 1 3.9506 5.0488 5.6784 40 1 2.2351 5.1056 6.1497 41 1 0.8980 2.8840 6.2370 42 1 2.0597 2.5141 7.5326 43 1 0.9258 0.4750 6.4942 44 1 2.7077 0.4363 6.4585 45 1 4.4362 1.4721 -0.9138 46 1 4.1764 2.4238 -2.4141 47 1 4.9372 4.1299 -0.8895 48 1 4.0839 3.3864 0.4977 49 1 5.7166 6.4444 0.1974 50 1 1.4432 3.7121 -2.3162 51 1 0.9245 3.5463 -0.6156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034005299.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:31 Heat of formation + Delta-G solvation = 68.624968 kcal Electronic energy + Delta-G solvation = -33327.411016 eV Core-core repulsion = 29231.540038 eV Total energy + Delta-G solvation = -4095.870978 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.10812 -41.49070 -39.15232 -38.07671 -36.92019 -34.95794 -34.02844 -33.37598 -31.62060 -31.25857 -30.56680 -29.01006 -28.17255 -26.59627 -25.63132 -24.55006 -24.03748 -22.96802 -22.21832 -21.95062 -20.71829 -19.55152 -18.90375 -18.75358 -18.18373 -17.84299 -17.08171 -16.76336 -16.46425 -16.04977 -15.61238 -15.39153 -15.25167 -15.03359 -14.76743 -14.63484 -14.30987 -14.12028 -14.00008 -13.80757 -13.69271 -13.55373 -13.36598 -13.09051 -12.91817 -12.85107 -12.76907 -12.70254 -12.40067 -12.31670 -12.11017 -12.00754 -11.90006 -11.74216 -11.60330 -11.55290 -11.43499 -11.33238 -11.09837 -10.88359 -10.48079 -10.07370 -9.49055 -8.63623 -7.65418 -5.04255 0.11774 0.69179 1.40987 1.44441 1.52333 1.78519 2.01289 2.21662 2.53315 2.88464 3.40336 3.46834 3.59332 3.77615 3.82202 3.88334 3.93093 3.98490 4.08170 4.14125 4.21141 4.25712 4.28261 4.39391 4.46132 4.52220 4.55860 4.67173 4.69881 4.71720 4.74755 4.85173 4.88273 4.95372 4.97062 4.98617 5.01407 5.04031 5.09295 5.10491 5.18402 5.29697 5.31020 5.36130 5.46709 5.48408 5.73989 5.86803 5.97706 6.39038 6.42646 6.99364 7.21414 7.31399 7.92995 8.58602 9.35867 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009184 B = 0.005003 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.151918 B = 5595.798933 C = 8060.548543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.094 3.906 3 N -0.594 5.594 4 C 0.546 3.454 5 O -0.480 6.480 6 C -0.027 4.027 7 N -0.336 5.336 8 O 0.125 5.875 9 C -0.015 4.015 10 C -0.183 4.183 11 C -0.033 4.033 12 C -0.088 4.088 13 H 0.078 0.922 14 C -0.145 4.145 15 C -0.108 4.108 16 C -0.030 4.030 17 C 0.149 3.851 18 H 0.134 0.866 19 C -0.146 4.146 20 C 0.162 3.838 21 N -0.594 5.594 22 C -0.219 4.219 23 H 0.067 0.933 24 C -0.069 4.069 25 N -0.946 5.946 26 Si 0.971 3.029 27 H -0.294 1.294 28 H -0.291 1.291 29 H -0.270 1.270 30 C 0.137 3.863 31 H 0.027 0.973 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.035 0.965 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.116 0.884 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.054 0.946 48 H 0.010 0.990 49 H 0.240 0.760 50 H 0.033 0.967 51 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.647 -17.334 12.753 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 N -0.329 5.329 4 C 0.331 3.669 5 O -0.350 6.350 6 C -0.184 4.184 7 N -0.041 5.041 8 O 0.055 5.945 9 C -0.080 4.080 10 C -0.188 4.188 11 C -0.071 4.071 12 C -0.107 4.107 13 H 0.097 0.903 14 C -0.203 4.203 15 C -0.145 4.145 16 C -0.067 4.067 17 C 0.045 3.955 18 H 0.152 0.848 19 C -0.185 4.185 20 C 0.037 3.963 21 N -0.318 5.318 22 C -0.349 4.349 23 H 0.085 0.915 24 C -0.261 4.261 25 N -0.597 5.597 26 Si 0.801 3.199 27 H -0.222 1.222 28 H -0.217 1.217 29 H -0.195 1.195 30 C 0.010 3.990 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.135 0.865 43 H 0.143 0.857 44 H 0.138 0.862 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.071 0.929 48 H 0.027 0.973 49 H 0.049 0.951 50 H 0.051 0.949 51 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -7.698 -17.462 11.873 22.475 hybrid contribution 0.338 2.179 -0.065 2.206 sum -7.359 -15.283 11.808 20.667 Atomic orbital electron populations 1.22019 0.95171 1.02957 1.00757 1.22097 0.95208 0.80523 1.04943 1.47837 1.65447 1.15101 1.04529 1.17538 0.79952 0.86632 0.82740 1.91193 1.42654 1.15143 1.86050 1.23221 1.06158 0.92414 0.96605 1.74570 1.18393 1.14666 0.96482 1.84631 1.62215 1.36162 1.11498 1.24757 0.99831 0.85315 0.98100 1.20823 1.07332 1.00104 0.90561 1.19891 0.99773 0.90162 0.97275 1.21292 0.99924 0.97930 0.91516 0.90336 1.21800 1.01375 0.95297 1.01780 1.21743 0.98347 0.92675 1.01738 1.20582 1.06829 0.98801 0.80505 1.22095 0.95094 0.92759 0.85521 0.84824 1.23377 0.95430 0.98483 1.01229 1.21843 0.90556 0.88737 0.95127 1.44372 1.09180 1.01110 1.77159 1.19298 0.96806 0.82359 1.36431 0.91497 1.25460 0.96065 1.01865 1.02707 1.70124 1.02496 1.33615 1.53460 0.85165 0.76619 0.80676 0.77461 1.22216 1.21726 1.19485 1.21523 0.91362 0.90055 0.96022 0.95356 0.92629 0.89172 0.87871 0.88742 0.92262 0.93892 0.89546 0.94587 0.92853 0.91696 0.86541 0.85727 0.86190 0.91157 0.90088 0.92850 0.97255 0.95059 0.94883 0.98357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.92 71.98 0.71 -2.80 16 2 C 0.09 2.41 5.69 86.38 0.49 2.90 16 3 N -0.59 -20.88 2.51 -794.08 -1.99 -22.87 16 4 C 0.55 23.15 6.79 86.93 0.59 23.74 16 5 O -0.48 -25.38 9.51 -3.70 -0.04 -25.41 16 6 C -0.03 -0.98 6.88 42.55 0.29 -0.69 16 7 N -0.34 -9.90 8.00 -48.94 -0.39 -10.29 16 8 O 0.13 3.08 11.18 78.68 0.88 3.96 16 9 C -0.02 -0.35 7.38 24.99 0.18 -0.17 16 10 C -0.18 -5.87 6.04 -20.05 -0.12 -5.99 16 11 C -0.03 -1.11 4.95 29.83 0.15 -0.97 16 12 C -0.09 -1.94 2.70 -10.57 -0.03 -1.97 16 13 H 0.08 1.66 8.12 -2.39 -0.02 1.64 16 14 C -0.15 -3.12 9.16 71.98 0.66 -2.46 16 15 C -0.11 -1.48 5.18 30.78 0.16 -1.32 16 16 C -0.03 -0.35 6.31 29.96 0.19 -0.17 16 17 C 0.15 5.41 3.68 46.18 0.17 5.58 16 18 H 0.13 3.64 7.93 -2.39 -0.02 3.62 16 19 C -0.15 -5.93 6.67 31.99 0.21 -5.72 16 20 C 0.16 8.91 4.90 86.85 0.43 9.34 16 21 N -0.59 -33.79 2.28 -691.99 -1.58 -35.37 16 22 C -0.22 -13.59 10.27 84.03 0.86 -12.72 16 23 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 24 C -0.07 -4.28 5.49 84.86 0.47 -3.82 16 25 N -0.95 -61.38 10.09 21.65 0.22 -61.16 16 26 Si 0.97 49.82 29.55 68.60 2.03 51.84 16 27 H -0.29 -15.07 7.11 99.48 0.71 -14.36 16 28 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 29 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 30 C 0.14 6.35 6.01 86.73 0.52 6.87 16 31 H 0.03 0.78 7.70 -2.39 -0.02 0.77 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 2.05 7.97 -2.39 -0.02 2.03 16 35 H 0.09 2.54 5.05 -2.39 -0.01 2.53 16 36 H 0.06 2.18 8.12 -2.39 -0.02 2.16 16 37 H 0.04 1.84 7.91 -2.38 -0.02 1.82 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 42 H 0.12 0.87 8.11 -2.39 -0.02 0.85 16 43 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 47 H 0.05 3.35 5.87 -2.39 -0.01 3.33 16 48 H 0.01 0.62 5.26 -14.87 -0.08 0.54 16 49 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 50 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 51 H 0.00 -0.07 7.34 -2.39 -0.02 -0.09 16 Total: -1.00 -82.79 387.55 5.92 -76.87 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.86 Total: 12.80 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 5.94 Total: 9.64 kcal Atomic # 7 Polarization: -125.95 SS G_CDS: -3.75 Total: -129.70 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.84 Total: -21.45 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 2.03 Total: 51.84 kcal Total: -82.79 5.92 -76.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034005299.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.494 kcal (2) G-P(sol) polarization free energy of solvation -82.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds