Wall clock time and date at job start Wed Apr 1 2020 04:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47339 * 2 1 4 4 C 1.46493 * 120.00278 * 89.99795 * 3 2 1 5 5 C 1.39050 * 119.99877 * 270.00012 * 3 2 1 6 6 C 1.39226 * 119.92643 * 359.72364 * 5 3 2 7 7 C 1.37609 * 120.06095 * 179.72064 * 6 5 3 8 8 C 1.39796 * 119.93219 * 0.57668 * 7 6 5 9 9 C 1.47525 * 120.06632 * 179.72058 * 8 7 6 10 10 O 1.21598 * 120.00285 * 320.63921 * 9 8 7 11 11 N 1.34774 * 120.00033 * 140.64303 * 9 8 7 12 12 C 1.46501 * 119.99807 * 4.91108 * 11 9 8 13 13 C 1.46498 * 120.00276 * 184.91529 * 11 9 8 14 14 H 1.09000 * 110.88745 * 0.69649 * 13 11 9 15 15 C 1.54903 * 111.00746 * 124.58084 * 13 11 9 16 16 N 1.47426 * 104.83243 * 155.08074 * 15 13 11 17 17 C 1.36941 * 125.64529 * 155.83251 * 16 15 13 18 18 H 1.08004 * 119.99903 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99858 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99846 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99893 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46871 * 60.00660 * 21 19 17 23 23 H 1.48501 * 109.46719 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47120 * 300.00252 * 21 19 17 25 25 C 1.47020 * 108.70470 * 335.87456 * 16 15 13 26 26 C 1.54367 * 107.28817 * 1.08582 * 25 16 15 27 27 H 1.08995 * 110.71049 * 263.80085 * 26 25 16 28 28 O 1.42899 * 110.75495 * 140.50874 * 26 25 16 29 29 C 1.39788 * 119.86491 * 359.70092 * 8 7 6 30 30 C 1.37611 * 119.92937 * 359.97438 * 29 8 7 31 31 H 1.09004 * 109.46854 * 60.00371 * 1 2 3 32 32 H 1.09001 * 109.47386 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47223 * 299.99929 * 1 2 3 34 34 H 1.08998 * 109.46823 * 120.00083 * 2 1 3 35 35 H 1.09000 * 109.47225 * 239.99284 * 2 1 3 36 36 H 1.09005 * 109.47431 * 89.99785 * 4 3 2 37 37 H 1.09001 * 109.47335 * 210.00114 * 4 3 2 38 38 H 1.09005 * 109.47192 * 329.99902 * 4 3 2 39 39 H 1.07990 * 119.97059 * 359.97438 * 6 5 3 40 40 H 1.08000 * 120.03446 * 180.27405 * 7 6 5 41 41 H 1.09004 * 109.46977 * 85.36968 * 12 11 9 42 42 H 1.08998 * 109.47491 * 205.36536 * 12 11 9 43 43 H 1.09002 * 109.47148 * 325.36825 * 12 11 9 44 44 H 1.08995 * 110.36898 * 273.92301 * 15 13 11 45 45 H 1.08998 * 110.36682 * 36.13520 * 15 13 11 46 46 H 0.97000 * 119.99662 * 180.02562 * 20 19 17 47 47 H 1.08991 * 109.88468 * 120.47477 * 25 16 15 48 48 H 1.09000 * 109.87976 * 241.48836 * 25 16 15 49 49 H 0.96697 * 114.00342 * 66.48506 * 28 26 25 50 50 H 1.08002 * 120.03807 * 179.97438 * 29 8 7 51 51 H 1.08002 * 119.96804 * 180.02562 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2686 5 6 2.2501 2.0366 -1.2042 6 6 2.0230 1.3769 -2.4090 7 6 2.2460 2.0248 -3.6024 8 6 2.7125 3.3427 -3.6041 9 6 2.9584 4.0380 -4.8818 10 8 3.4539 3.4371 -5.8155 11 7 2.6338 5.3394 -5.0141 12 6 2.1375 6.0916 -3.8590 13 6 2.7773 6.0018 -6.3128 14 1 3.1445 5.3048 -7.0661 15 6 1.4411 6.6470 -6.7577 16 7 1.8333 7.7334 -7.6739 17 6 1.0458 8.2722 -8.6562 18 1 0.0433 7.9007 -8.8092 19 6 1.5358 9.2966 -9.4546 20 7 2.7573 9.7497 -9.2678 21 14 0.4614 10.0321 -10.7941 22 1 -0.7647 10.6072 -10.1851 23 1 1.2125 11.1014 -11.4996 24 1 0.0827 8.9721 -11.7627 25 6 3.2100 8.1419 -7.3589 26 6 3.7028 7.2426 -6.2051 27 1 3.5699 7.7404 -5.2446 28 8 5.0692 6.8724 -6.3996 29 6 2.9450 4.0003 -2.3927 30 6 2.7138 3.3493 -1.2026 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 3.2920 1.9005 1.5834 37 1 2.0956 3.1410 1.1383 38 1 1.5817 1.6878 2.0283 39 1 1.6677 0.3572 -2.4071 40 1 2.0655 1.5141 -4.5367 41 1 2.9813 6.4741 -3.2847 42 1 1.5252 6.9248 -4.2039 43 1 1.5367 5.4355 -3.2291 44 1 0.8220 5.9166 -7.2784 45 1 0.9085 7.0491 -5.8959 46 1 3.0995 10.4658 -9.8255 47 1 3.8466 8.0045 -8.2329 48 1 3.2251 9.1871 -7.0501 49 1 5.6891 7.6123 -6.3421 50 1 3.3058 5.0183 -2.3908 51 1 2.8929 3.8569 -0.2663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047648293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:02 Heat of formation + Delta-G solvation = 2.434189 kcal Electronic energy + Delta-G solvation = -30951.407435 eV Core-core repulsion = 26852.666209 eV Total energy + Delta-G solvation = -4098.741226 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.45078 -39.33012 -37.79961 -36.47736 -35.15618 -34.71304 -32.21231 -32.00891 -30.95219 -29.91174 -28.47867 -27.34734 -26.82408 -26.34936 -24.52443 -23.79887 -22.39330 -21.54435 -20.38018 -20.25362 -19.10874 -17.78091 -17.22061 -17.03804 -16.50859 -16.23502 -15.83587 -15.18420 -15.14309 -14.90730 -14.67756 -14.24244 -14.10959 -14.00941 -13.77237 -13.53898 -13.16368 -12.95520 -12.90472 -12.72612 -12.57803 -12.52187 -12.42495 -12.28877 -12.06958 -11.95968 -11.82258 -11.43461 -11.37582 -11.17631 -10.88799 -10.82690 -10.76841 -10.16214 -10.07712 -9.86004 -9.79012 -9.56691 -9.20019 -9.08620 -8.67926 -8.26808 -7.54411 -6.89089 -5.74107 -3.09333 1.12178 1.32588 2.72543 3.00970 3.24026 3.40835 3.44924 3.46199 3.82604 4.41965 4.46921 4.53857 4.67689 4.71722 4.76596 4.83158 4.86353 4.95642 5.09762 5.17881 5.18798 5.28420 5.30680 5.31870 5.34980 5.43769 5.44814 5.49903 5.56510 5.67701 5.71835 5.76515 5.82688 5.88551 5.92332 6.02346 6.06300 6.19876 6.21744 6.42761 6.53660 6.58933 6.67009 6.90601 6.98884 7.18111 7.38583 7.50498 7.69944 7.76531 8.19478 8.26096 8.49288 9.16425 9.76608 10.40103 11.37131 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022265 B = 0.002146 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.299674 B =13042.385532 C =13407.763180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.116 3.884 3 N -0.629 5.629 4 C 0.091 3.909 5 C 0.233 3.767 6 C -0.207 4.207 7 C -0.016 4.016 8 C -0.183 4.183 9 C 0.563 3.437 10 O -0.538 6.538 11 N -0.597 5.597 12 C 0.069 3.931 13 C 0.134 3.866 14 H 0.115 0.885 15 C 0.131 3.869 16 N -0.599 5.599 17 C -0.230 4.230 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.922 5.922 21 Si 0.916 3.084 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.153 3.847 26 C 0.066 3.934 27 H 0.055 0.945 28 O -0.559 6.559 29 C -0.043 4.043 30 C -0.208 4.208 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.048 0.952 45 H 0.027 0.973 46 H 0.254 0.746 47 H 0.060 0.940 48 H 0.048 0.952 49 H 0.372 0.628 50 H 0.134 0.866 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.511 -15.293 24.279 28.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.007 4.007 3 N -0.339 5.339 4 C -0.052 4.052 5 C 0.131 3.869 6 C -0.229 4.229 7 C -0.036 4.036 8 C -0.188 4.188 9 C 0.352 3.648 10 O -0.416 6.416 11 N -0.328 5.328 12 C -0.074 4.074 13 C 0.030 3.970 14 H 0.133 0.867 15 C 0.004 3.996 16 N -0.327 5.327 17 C -0.358 4.358 18 H 0.098 0.902 19 C -0.203 4.203 20 N -0.570 5.570 21 Si 0.746 3.254 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.027 3.973 26 C 0.005 3.995 27 H 0.072 0.928 28 O -0.364 6.364 29 C -0.062 4.062 30 C -0.230 4.230 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.066 0.934 45 H 0.044 0.956 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.066 0.934 49 H 0.219 0.781 50 H 0.152 0.848 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.522 -16.118 23.726 28.724 hybrid contribution -0.316 1.152 -0.477 1.286 sum -1.838 -14.966 23.250 27.711 Atomic orbital electron populations 1.22235 0.96186 1.02113 1.02687 1.21441 0.94171 0.82239 1.02845 1.46407 1.70940 1.13296 1.03248 1.21661 1.00625 0.97984 0.84960 1.17972 0.91909 0.91340 0.85724 1.20576 1.10831 1.00819 0.90682 1.20908 0.92606 0.92221 0.97841 1.19646 1.10213 0.96026 0.92948 1.18263 0.77717 0.81289 0.87505 1.90777 1.43321 1.66038 1.41439 1.47614 1.64669 1.09883 1.10674 1.22127 0.99096 0.97546 0.88641 1.22379 0.96170 0.93997 0.84414 0.86738 1.21790 0.93200 0.90995 0.93636 1.44231 1.12271 1.38838 1.37328 1.19025 0.95552 1.13599 1.07646 0.90204 1.24827 0.96816 0.99007 0.99691 1.69928 1.15293 1.30202 1.41545 0.86145 0.79182 0.78590 0.81515 1.21116 1.21570 1.21046 1.21841 0.86408 0.95112 0.93908 1.23549 0.81705 0.95686 0.98550 0.92753 1.86520 1.16532 1.37762 1.95554 1.21388 0.94522 0.99371 0.90899 1.20575 1.09921 0.94070 0.98481 0.92011 0.91688 0.92553 0.90821 0.90359 0.93235 0.91066 0.91586 0.85625 0.85295 0.92736 0.90179 0.90593 0.93366 0.95582 0.93590 0.92220 0.93435 0.78131 0.84812 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.24 37.16 0.38 -0.53 16 2 C 0.12 0.65 5.87 -4.04 -0.02 0.62 16 3 N -0.63 -4.59 2.99 -179.63 -0.54 -5.13 16 4 C 0.09 0.47 10.17 59.84 0.61 1.07 16 5 C 0.23 2.25 6.55 -83.86 -0.55 1.70 16 6 C -0.21 -2.13 9.18 -39.44 -0.36 -2.50 16 7 C -0.02 -0.21 9.62 -39.23 -0.38 -0.58 16 8 C -0.18 -2.56 5.24 -104.95 -0.55 -3.11 16 9 C 0.56 9.97 7.34 -12.48 -0.09 9.88 16 10 O -0.54 -11.69 16.30 5.28 0.09 -11.61 16 11 N -0.60 -10.02 2.91 -172.71 -0.50 -10.52 16 12 C 0.07 0.86 7.64 59.85 0.46 1.32 16 13 C 0.13 2.71 3.17 -65.78 -0.21 2.50 16 14 H 0.11 2.69 7.02 -51.93 -0.36 2.32 16 15 C 0.13 2.80 6.78 -2.53 -0.02 2.78 16 16 N -0.60 -15.47 3.39 -170.05 -0.58 -16.04 16 17 C -0.23 -6.44 10.28 -15.06 -0.15 -6.59 16 18 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -27.01 10.31 55.49 0.57 -26.44 16 21 Si 0.92 22.15 29.55 -169.99 -5.02 17.13 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.15 3.74 5.15 -3.04 -0.02 3.72 16 26 C 0.07 1.31 3.91 -24.87 -0.10 1.21 16 27 H 0.05 0.97 7.21 -51.93 -0.37 0.60 16 28 O -0.56 -10.89 13.39 -35.23 -0.47 -11.36 16 29 C -0.04 -0.48 7.55 -39.23 -0.30 -0.78 16 30 C -0.21 -2.01 9.18 -39.45 -0.36 -2.37 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 35 H 0.08 0.44 6.16 -51.93 -0.32 0.12 16 36 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.35 6.17 -51.93 -0.32 0.03 16 38 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 39 H 0.13 1.05 6.11 -52.49 -0.32 0.73 16 40 H 0.13 1.63 8.05 -52.49 -0.42 1.21 16 41 H 0.05 0.59 6.87 -51.93 -0.36 0.24 16 42 H 0.08 1.03 6.15 -51.93 -0.32 0.71 16 43 H 0.08 0.82 5.83 -51.93 -0.30 0.52 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.03 0.52 6.13 -51.93 -0.32 0.20 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.06 1.65 7.30 -51.93 -0.38 1.27 16 48 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 49 H 0.37 5.58 9.12 45.56 0.42 5.99 16 50 H 0.13 1.36 5.30 -52.49 -0.28 1.08 16 51 H 0.13 0.94 6.11 -52.49 -0.32 0.62 16 LS Contribution 397.54 15.07 5.99 5.99 Total: -1.00 -35.29 397.54 -9.09 -44.37 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.87 Total: 5.56 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -1.75 Total: 8.05 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -1.04 Total: -58.13 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.39 Total: -22.97 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.29 -9.09 -44.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047648293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.809 kcal (2) G-P(sol) polarization free energy of solvation -35.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds