Wall clock time and date at job start Wed Apr 1 2020 04:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47339 * 2 1 4 4 C 1.46493 * 120.00278 * 89.99795 * 3 2 1 5 5 C 1.39050 * 119.99877 * 270.00012 * 3 2 1 6 6 C 1.39226 * 119.92643 * 359.72364 * 5 3 2 7 7 C 1.37609 * 120.06095 * 179.72064 * 6 5 3 8 8 C 1.39796 * 119.93219 * 0.57668 * 7 6 5 9 9 C 1.47525 * 120.06632 * 179.72058 * 8 7 6 10 10 O 1.21598 * 120.00285 * 320.63921 * 9 8 7 11 11 N 1.34774 * 120.00033 * 140.64303 * 9 8 7 12 12 C 1.46501 * 119.99807 * 4.91108 * 11 9 8 13 13 C 1.46498 * 120.00276 * 184.91529 * 11 9 8 14 14 H 1.09000 * 110.88745 * 0.69649 * 13 11 9 15 15 C 1.54903 * 111.00746 * 124.58084 * 13 11 9 16 16 N 1.47426 * 104.83243 * 155.08074 * 15 13 11 17 17 C 1.36941 * 125.64529 * 155.83251 * 16 15 13 18 18 H 1.08004 * 119.99903 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99858 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99846 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99893 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46871 * 60.00660 * 21 19 17 23 23 H 1.48501 * 109.46719 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47120 * 300.00252 * 21 19 17 25 25 C 1.47020 * 108.70470 * 335.87456 * 16 15 13 26 26 C 1.54367 * 107.28817 * 1.08582 * 25 16 15 27 27 H 1.08995 * 110.71049 * 263.80085 * 26 25 16 28 28 O 1.42899 * 110.75495 * 140.50874 * 26 25 16 29 29 C 1.39788 * 119.86491 * 359.70092 * 8 7 6 30 30 C 1.37611 * 119.92937 * 359.97438 * 29 8 7 31 31 H 1.09004 * 109.46854 * 60.00371 * 1 2 3 32 32 H 1.09001 * 109.47386 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47223 * 299.99929 * 1 2 3 34 34 H 1.08998 * 109.46823 * 120.00083 * 2 1 3 35 35 H 1.09000 * 109.47225 * 239.99284 * 2 1 3 36 36 H 1.09005 * 109.47431 * 89.99785 * 4 3 2 37 37 H 1.09001 * 109.47335 * 210.00114 * 4 3 2 38 38 H 1.09005 * 109.47192 * 329.99902 * 4 3 2 39 39 H 1.07990 * 119.97059 * 359.97438 * 6 5 3 40 40 H 1.08000 * 120.03446 * 180.27405 * 7 6 5 41 41 H 1.09004 * 109.46977 * 85.36968 * 12 11 9 42 42 H 1.08998 * 109.47491 * 205.36536 * 12 11 9 43 43 H 1.09002 * 109.47148 * 325.36825 * 12 11 9 44 44 H 1.08995 * 110.36898 * 273.92301 * 15 13 11 45 45 H 1.08998 * 110.36682 * 36.13520 * 15 13 11 46 46 H 0.97000 * 119.99662 * 180.02562 * 20 19 17 47 47 H 1.08991 * 109.88468 * 120.47477 * 25 16 15 48 48 H 1.09000 * 109.87976 * 241.48836 * 25 16 15 49 49 H 0.96697 * 114.00342 * 66.48506 * 28 26 25 50 50 H 1.08002 * 120.03807 * 179.97438 * 29 8 7 51 51 H 1.08002 * 119.96804 * 180.02562 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2686 5 6 2.2501 2.0366 -1.2042 6 6 2.0230 1.3769 -2.4090 7 6 2.2460 2.0248 -3.6024 8 6 2.7125 3.3427 -3.6041 9 6 2.9584 4.0380 -4.8818 10 8 3.4539 3.4371 -5.8155 11 7 2.6338 5.3394 -5.0141 12 6 2.1375 6.0916 -3.8590 13 6 2.7773 6.0018 -6.3128 14 1 3.1445 5.3048 -7.0661 15 6 1.4411 6.6470 -6.7577 16 7 1.8333 7.7334 -7.6739 17 6 1.0458 8.2722 -8.6562 18 1 0.0433 7.9007 -8.8092 19 6 1.5358 9.2966 -9.4546 20 7 2.7573 9.7497 -9.2678 21 14 0.4614 10.0321 -10.7941 22 1 -0.7647 10.6072 -10.1851 23 1 1.2125 11.1014 -11.4996 24 1 0.0827 8.9721 -11.7627 25 6 3.2100 8.1419 -7.3589 26 6 3.7028 7.2426 -6.2051 27 1 3.5699 7.7404 -5.2446 28 8 5.0692 6.8724 -6.3996 29 6 2.9450 4.0003 -2.3927 30 6 2.7138 3.3493 -1.2026 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 3.2920 1.9005 1.5834 37 1 2.0956 3.1410 1.1383 38 1 1.5817 1.6878 2.0283 39 1 1.6677 0.3572 -2.4071 40 1 2.0655 1.5141 -4.5367 41 1 2.9813 6.4741 -3.2847 42 1 1.5252 6.9248 -4.2039 43 1 1.5367 5.4355 -3.2291 44 1 0.8220 5.9166 -7.2784 45 1 0.9085 7.0491 -5.8959 46 1 3.0995 10.4658 -9.8255 47 1 3.8466 8.0045 -8.2329 48 1 3.2251 9.1871 -7.0501 49 1 5.6891 7.6123 -6.3421 50 1 3.3058 5.0183 -2.3908 51 1 2.8929 3.8569 -0.2663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047648293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:01 Heat of formation + Delta-G solvation = -22.337952 kcal Electronic energy + Delta-G solvation = -30952.481635 eV Core-core repulsion = 26852.666209 eV Total energy + Delta-G solvation = -4099.815426 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.59152 -40.38276 -39.31049 -37.29733 -36.74077 -36.32813 -33.89300 -32.79627 -31.95897 -30.73035 -30.11509 -28.98521 -27.95984 -27.20234 -26.23343 -24.67693 -23.28666 -22.52139 -22.23837 -21.34311 -20.47224 -19.01718 -18.81312 -18.32939 -17.78705 -17.45903 -16.90374 -16.65540 -16.15202 -15.87761 -15.81996 -15.69532 -15.46190 -14.90378 -14.74787 -14.56685 -14.52701 -14.27271 -14.08155 -14.00478 -13.60336 -13.53671 -13.38653 -13.32932 -13.17121 -12.99696 -12.88840 -12.83822 -12.69163 -12.66585 -12.62103 -12.11370 -11.95813 -11.87375 -11.64320 -11.50489 -11.10713 -10.84930 -10.76613 -10.69545 -9.92228 -9.68794 -8.96096 -8.23425 -7.88002 -5.26267 0.19747 0.51288 1.45767 1.49956 1.55796 1.76972 1.94527 2.18726 2.48223 2.91598 3.13435 3.32827 3.56633 3.67320 3.82666 3.84807 3.96007 4.06099 4.08415 4.14442 4.24567 4.32525 4.37541 4.41010 4.44310 4.51607 4.53283 4.58885 4.62652 4.69621 4.74640 4.76956 4.90145 4.93584 4.95826 4.98190 5.04565 5.13904 5.27583 5.33095 5.36618 5.38171 5.42693 5.48886 5.60440 5.65484 5.79112 6.12348 6.33483 6.41327 6.50627 6.85999 7.03359 7.16584 7.68411 8.31592 9.21509 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022265 B = 0.002146 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.299674 B =13042.385532 C =13407.763180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.110 3.890 3 N -0.625 5.625 4 C 0.083 3.917 5 C 0.239 3.761 6 C -0.209 4.209 7 C -0.029 4.029 8 C -0.211 4.211 9 C 0.558 3.442 10 O -0.594 6.594 11 N -0.594 5.594 12 C 0.063 3.937 13 C 0.145 3.855 14 H 0.073 0.927 15 C 0.134 3.866 16 N -0.621 5.621 17 C -0.247 4.247 18 H 0.086 0.914 19 C -0.064 4.064 20 N -0.950 5.950 21 Si 0.983 3.017 22 H -0.272 1.272 23 H -0.293 1.293 24 H -0.280 1.280 25 C 0.165 3.835 26 C 0.085 3.915 27 H 0.089 0.911 28 O -0.572 6.572 29 C -0.036 4.036 30 C -0.206 4.206 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.142 0.858 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.040 0.960 45 H 0.055 0.945 46 H 0.249 0.751 47 H 0.016 0.984 48 H 0.027 0.973 49 H 0.392 0.608 50 H 0.148 0.852 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.555 -15.746 28.131 32.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.013 4.013 3 N -0.333 5.333 4 C -0.059 4.059 5 C 0.134 3.866 6 C -0.231 4.231 7 C -0.048 4.048 8 C -0.216 4.216 9 C 0.350 3.650 10 O -0.476 6.476 11 N -0.325 5.325 12 C -0.078 4.078 13 C 0.039 3.961 14 H 0.091 0.909 15 C 0.008 3.992 16 N -0.348 5.348 17 C -0.376 4.376 18 H 0.103 0.897 19 C -0.257 4.257 20 N -0.598 5.598 21 Si 0.811 3.189 22 H -0.197 1.197 23 H -0.219 1.219 24 H -0.206 1.206 25 C 0.039 3.961 26 C 0.024 3.976 27 H 0.106 0.894 28 O -0.379 6.379 29 C -0.056 4.056 30 C -0.228 4.228 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.159 0.841 40 H 0.133 0.867 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.034 0.966 48 H 0.045 0.955 49 H 0.241 0.759 50 H 0.165 0.835 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.591 -16.584 27.667 32.361 hybrid contribution -0.004 1.156 -1.514 1.904 sum -2.596 -15.428 26.154 30.476 Atomic orbital electron populations 1.22180 0.95844 1.02765 1.01907 1.21625 0.94384 0.81494 1.03789 1.46706 1.69529 1.13884 1.03209 1.21879 1.01606 0.98295 0.84151 1.18141 0.90602 0.91532 0.86373 1.20680 1.10716 1.01493 0.90223 1.20896 0.93459 0.92123 0.98357 1.19401 1.13703 0.96626 0.91913 1.18947 0.76526 0.81200 0.88301 1.90735 1.45961 1.67181 1.43703 1.47630 1.64478 1.10002 1.10352 1.22437 1.00402 0.97511 0.87446 1.21889 0.95338 0.93209 0.85630 0.90857 1.21886 0.93929 0.89799 0.93610 1.44503 1.12676 1.39863 1.37802 1.19431 0.96155 1.13674 1.08313 0.89652 1.25709 0.98218 0.99722 1.02072 1.70144 1.16824 1.30499 1.42349 0.85087 0.77728 0.77505 0.78598 1.19721 1.21913 1.20636 1.21589 0.85547 0.95072 0.93906 1.23327 0.81787 0.94522 0.97916 0.89370 1.86491 1.16618 1.39213 1.95562 1.21479 0.93933 0.99899 0.90241 1.20842 1.09024 0.94020 0.98910 0.93727 0.90428 0.92290 0.88787 0.90578 0.92478 0.90467 0.89844 0.84080 0.86740 0.90141 0.90185 0.88430 0.94178 0.92763 0.94176 0.96569 0.95472 0.75853 0.83476 0.82834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.24 71.98 0.74 -0.58 16 2 C 0.11 0.88 5.87 86.38 0.51 1.38 16 3 N -0.63 -6.95 2.99 -722.22 -2.16 -9.11 16 4 C 0.08 0.50 10.17 127.77 1.30 1.80 16 5 C 0.24 3.94 6.55 38.47 0.25 4.19 16 6 C -0.21 -4.03 9.18 22.36 0.21 -3.83 16 7 C -0.03 -0.73 9.62 22.50 0.22 -0.51 16 8 C -0.21 -5.83 5.24 -20.08 -0.11 -5.93 16 9 C 0.56 20.25 7.34 86.69 0.64 20.89 16 10 O -0.59 -27.40 16.30 -4.02 -0.07 -27.47 16 11 N -0.59 -19.77 2.91 -818.58 -2.38 -22.15 16 12 C 0.06 1.42 7.64 127.77 0.98 2.40 16 13 C 0.14 5.98 3.17 46.38 0.15 6.13 16 14 H 0.07 3.66 7.02 -2.39 -0.02 3.64 16 15 C 0.13 5.79 6.78 86.85 0.59 6.38 16 16 N -0.62 -32.87 3.39 -691.93 -2.35 -35.21 16 17 C -0.25 -14.10 10.28 84.03 0.86 -13.23 16 18 H 0.09 4.63 7.83 -2.91 -0.02 4.60 16 19 C -0.06 -3.68 5.49 84.86 0.47 -3.22 16 20 N -0.95 -57.39 10.31 21.65 0.22 -57.17 16 21 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 25 C 0.16 8.33 5.15 86.74 0.45 8.78 16 26 C 0.09 3.40 3.91 31.80 0.12 3.52 16 27 H 0.09 2.96 7.21 -2.39 -0.02 2.94 16 28 O -0.57 -22.41 13.39 -148.98 -1.99 -24.40 16 29 C -0.04 -0.74 7.55 22.50 0.17 -0.57 16 30 C -0.21 -3.27 9.18 22.36 0.21 -3.06 16 31 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.09 0.42 8.07 -2.39 -0.02 0.40 16 35 H 0.08 0.67 6.16 -2.39 -0.01 0.65 16 36 H 0.06 0.31 8.14 -2.38 -0.02 0.29 16 37 H 0.08 0.40 6.17 -2.39 -0.01 0.39 16 38 H 0.08 0.26 8.07 -2.38 -0.02 0.24 16 39 H 0.14 2.17 6.11 -2.92 -0.02 2.15 16 40 H 0.11 3.13 8.05 -2.91 -0.02 3.10 16 41 H 0.08 1.44 6.87 -2.38 -0.02 1.42 16 42 H 0.08 1.83 6.15 -2.39 -0.01 1.81 16 43 H 0.10 1.82 5.83 -2.39 -0.01 1.81 16 44 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.05 2.08 6.13 -2.39 -0.01 2.07 16 46 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 47 H 0.02 0.94 7.30 -2.39 -0.02 0.93 16 48 H 0.03 1.46 7.50 -2.39 -0.02 1.45 16 49 H 0.39 11.63 9.12 -74.06 -0.68 10.95 16 50 H 0.15 2.48 5.30 -2.91 -0.02 2.47 16 51 H 0.15 1.56 6.11 -2.91 -0.02 1.54 16 Total: -1.00 -80.95 397.54 1.32 -79.63 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.28 Total: 23.15 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: 7.74 Total: 24.54 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -6.67 Total: -123.64 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -2.06 Total: -51.87 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -80.95 1.32 -79.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047648293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.292 kcal (2) G-P(sol) polarization free energy of solvation -80.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds