Wall clock time and date at job start Wed Apr 1 2020 04:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46502 * 109.47265 * 2 1 4 4 C 1.46493 * 120.00012 * 269.99674 * 3 2 1 5 5 C 1.39048 * 119.99848 * 89.99865 * 3 2 1 6 6 C 1.39220 * 119.92627 * 180.02562 * 5 3 2 7 7 C 1.37611 * 120.06658 * 180.02562 * 6 5 3 8 8 C 1.39799 * 119.93100 * 359.97438 * 7 6 5 9 9 C 1.47522 * 120.06933 * 179.97438 * 8 7 6 10 10 O 1.21596 * 119.99811 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00006 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99734 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.45294 * 324.97170 * 12 11 9 14 14 C 1.53037 * 109.46028 * 84.93633 * 12 11 9 15 15 C 1.52762 * 109.38664 * 181.25914 * 14 12 11 16 16 N 1.46930 * 109.00426 * 305.58696 * 15 14 12 17 17 C 1.36935 * 120.62935 * 233.58408 * 16 15 14 18 18 H 1.07992 * 120.00276 * 152.17564 * 17 16 15 19 19 C 1.38815 * 120.00026 * 331.89562 * 17 16 15 20 20 N 1.31620 * 119.99785 * 343.17001 * 19 17 16 21 21 Si 1.86799 * 120.00242 * 163.17219 * 19 17 16 22 22 H 1.48499 * 109.47051 * 59.99668 * 21 19 17 23 23 H 1.48497 * 109.47273 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46803 * 299.99780 * 21 19 17 25 25 C 1.46919 * 118.74055 * 53.31040 * 16 15 14 26 26 C 1.53042 * 109.45881 * 204.99938 * 12 11 9 27 27 H 1.08998 * 109.50244 * 298.56908 * 26 12 11 28 28 O 1.42908 * 109.52177 * 58.64997 * 26 12 11 29 29 C 1.39799 * 119.85973 * 0.24863 * 8 7 6 30 30 C 1.37603 * 119.93143 * 359.49396 * 29 8 7 31 31 H 1.08999 * 109.47502 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47831 * 300.00551 * 1 2 3 33 33 H 1.09009 * 109.47274 * 60.00184 * 1 2 3 34 34 H 1.08992 * 109.47522 * 239.99445 * 2 1 3 35 35 H 1.09009 * 109.46815 * 119.99544 * 2 1 3 36 36 H 1.09004 * 109.47112 * 269.99994 * 4 3 2 37 37 H 1.09002 * 109.47228 * 29.99747 * 4 3 2 38 38 H 1.08996 * 109.47293 * 150.00222 * 4 3 2 39 39 H 1.07997 * 119.96637 * 359.97438 * 6 5 3 40 40 H 1.08002 * 120.03625 * 179.97438 * 7 6 5 41 41 H 0.97003 * 119.99807 * 0.02562 * 11 9 8 42 42 H 1.09005 * 109.49815 * 301.33562 * 14 12 11 43 43 H 1.08999 * 109.49987 * 61.39634 * 14 12 11 44 44 H 1.08999 * 109.50873 * 185.70684 * 15 14 12 45 45 H 1.08996 * 109.43278 * 65.41931 * 15 14 12 46 46 H 0.97003 * 120.00199 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.58944 * 66.42417 * 25 16 15 48 48 H 1.08994 * 109.59015 * 186.71109 * 25 16 15 49 49 H 0.96693 * 114.00059 * 179.84891 * 28 26 12 50 50 H 1.07995 * 120.02807 * 179.74693 * 29 8 7 51 51 H 1.08002 * 119.96778 * 180.24633 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 2.2500 2.0367 1.2042 6 6 2.7136 3.3494 1.2025 7 6 2.9444 4.0007 2.3925 8 6 2.7124 3.3429 3.6041 9 6 2.9593 4.0379 4.8817 10 8 3.3655 5.1840 4.8816 11 7 2.7346 3.4026 6.0489 12 6 2.9804 4.0927 7.3175 13 1 3.8408 4.7534 7.2106 14 6 1.7483 4.9176 7.6963 15 6 2.0179 5.6611 9.0032 16 7 2.4347 4.6932 10.0271 17 6 1.7895 4.6324 11.2334 18 1 1.7597 3.7037 11.7837 19 6 1.1786 5.7661 11.7517 20 7 1.4860 6.9546 11.2769 21 14 -0.0794 5.6050 13.1231 22 1 0.5552 4.9674 14.3046 23 1 -0.5802 6.9522 13.4962 24 1 -1.2139 4.7671 12.6581 25 6 3.5528 3.7877 9.7298 26 6 3.2623 3.0614 8.4126 27 1 2.3928 2.4160 8.5371 28 8 4.3943 2.2708 8.0441 29 6 2.2513 2.0231 3.6024 30 6 2.0174 1.3791 2.4091 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3635 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8901 34 1 1.8933 -0.5139 -0.8898 35 1 1.8932 -0.5138 0.8901 36 1 3.2920 1.9005 -1.5833 37 1 1.5818 1.6876 -2.0284 38 1 2.0956 3.1410 -1.1384 39 1 2.8931 3.8569 0.2662 40 1 3.3044 5.0189 2.3906 41 1 2.4109 2.4882 6.0488 42 1 1.5342 5.6361 6.9051 43 1 0.8928 4.2548 7.8269 44 1 1.1092 6.1679 9.3278 45 1 2.8110 6.3924 8.8474 46 1 1.0589 7.7468 11.6388 47 1 4.4736 4.3631 9.6344 48 1 3.6581 3.0605 10.5349 49 1 4.6317 1.5965 8.6951 50 1 2.0750 1.5110 4.5367 51 1 1.6574 0.3609 2.4071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090846325.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:02 Heat of formation + Delta-G solvation = -49.343707 kcal Electronic energy + Delta-G solvation = -30590.492737 eV Core-core repulsion = 26489.506254 eV Total energy + Delta-G solvation = -4100.986484 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.39013 -40.38757 -39.30408 -37.25749 -36.97784 -35.77221 -33.86301 -32.86043 -31.91688 -31.65516 -30.64348 -29.92418 -27.43177 -26.82855 -24.94023 -23.99245 -23.53464 -23.20077 -22.18217 -21.31499 -20.82539 -19.28981 -18.73077 -18.01182 -17.80156 -17.46424 -16.83994 -16.56012 -16.04443 -15.91783 -15.72748 -15.63403 -15.60702 -15.14357 -14.97334 -14.68872 -14.59352 -14.42252 -14.13953 -13.88575 -13.65998 -13.39192 -13.35544 -13.30163 -13.25647 -12.97196 -12.91260 -12.67779 -12.67043 -12.38321 -12.13837 -12.05912 -11.99646 -11.88008 -11.62835 -11.39080 -11.09277 -10.86403 -10.83453 -10.55416 -10.02037 -9.96856 -8.76485 -8.27153 -7.89340 -5.37343 0.09381 0.49728 1.48828 1.51786 1.58545 1.97516 2.14652 2.21504 2.49966 3.00337 3.13314 3.27761 3.62759 3.79875 3.83532 3.93203 3.95464 4.06716 4.11379 4.22465 4.30972 4.34362 4.38943 4.40703 4.49985 4.54673 4.57580 4.66212 4.69871 4.72971 4.84774 4.91031 4.93705 4.95543 4.96169 5.02792 5.10870 5.12378 5.24443 5.33366 5.36960 5.39624 5.49588 5.55217 5.60512 5.65590 5.76962 6.30229 6.34119 6.46502 6.64038 6.90348 7.09787 7.32268 7.78133 8.31526 9.18077 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019347 B = 0.002060 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.880848 B =13590.444751 C =13712.912859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.110 3.890 3 N -0.624 5.624 4 C 0.082 3.918 5 C 0.242 3.758 6 C -0.213 4.213 7 C -0.023 4.023 8 C -0.219 4.219 9 C 0.556 3.444 10 O -0.598 6.598 11 N -0.701 5.701 12 C 0.171 3.829 13 H 0.052 0.948 14 C -0.128 4.128 15 C 0.181 3.819 16 N -0.603 5.603 17 C -0.266 4.266 18 H 0.078 0.922 19 C -0.053 4.053 20 N -0.938 5.938 21 Si 0.973 3.027 22 H -0.272 1.272 23 H -0.298 1.298 24 H -0.274 1.274 25 C 0.118 3.882 26 C 0.103 3.897 27 H 0.076 0.924 28 O -0.570 6.570 29 C -0.029 4.029 30 C -0.208 4.208 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.145 0.855 40 H 0.118 0.882 41 H 0.410 0.590 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.063 0.937 45 H -0.011 1.011 46 H 0.251 0.749 47 H 0.010 0.990 48 H 0.078 0.922 49 H 0.396 0.604 50 H 0.142 0.858 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.027 -19.510 -25.616 32.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.012 4.012 3 N -0.332 5.332 4 C -0.060 4.060 5 C 0.136 3.864 6 C -0.235 4.235 7 C -0.043 4.043 8 C -0.225 4.225 9 C 0.346 3.654 10 O -0.480 6.480 11 N -0.352 5.352 12 C 0.065 3.935 13 H 0.070 0.930 14 C -0.169 4.169 15 C 0.054 3.946 16 N -0.328 5.328 17 C -0.395 4.395 18 H 0.096 0.904 19 C -0.249 4.249 20 N -0.583 5.583 21 Si 0.801 3.199 22 H -0.198 1.198 23 H -0.225 1.225 24 H -0.200 1.200 25 C -0.009 4.009 26 C 0.042 3.958 27 H 0.094 0.906 28 O -0.378 6.378 29 C -0.048 4.048 30 C -0.230 4.230 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.162 0.838 40 H 0.136 0.864 41 H 0.248 0.752 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.007 0.993 46 H 0.060 0.940 47 H 0.028 0.972 48 H 0.096 0.904 49 H 0.246 0.754 50 H 0.160 0.840 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.832 -18.327 -26.276 32.047 hybrid contribution -0.496 0.312 1.497 1.607 sum -1.328 -18.015 -24.779 30.665 Atomic orbital electron populations 1.22193 0.95868 1.02884 1.01863 1.21668 0.94341 0.81108 1.04132 1.46739 1.69328 1.14050 1.03073 1.21866 1.01720 0.98037 0.84414 1.18159 0.90256 0.91035 0.86942 1.20748 1.09871 0.94586 0.98337 1.21002 0.93094 0.99062 0.91165 1.19561 1.13958 0.96968 0.91966 1.18751 0.76191 0.85552 0.84861 1.90729 1.48979 1.19959 1.88357 1.45727 1.67338 1.17620 1.04489 1.20624 0.97079 0.93344 0.82429 0.92971 1.22247 0.97496 0.99145 0.97975 1.20447 0.98139 0.90020 0.85978 1.44226 1.34861 1.40221 1.13449 1.19543 1.28452 0.94465 0.97062 0.90393 1.25932 1.03176 0.94697 1.01050 1.70212 1.44259 0.97593 1.46238 0.85258 0.79307 0.76223 0.79139 1.19765 1.22476 1.20014 1.21695 0.89841 0.93531 0.95814 1.22304 0.88928 0.91595 0.92985 0.90649 1.86470 1.49434 1.51796 1.50067 1.21197 0.92670 0.91824 0.99138 1.20817 1.10080 1.01959 0.90124 0.90154 0.93567 0.92660 0.88782 0.89885 0.92361 0.89629 0.91143 0.83779 0.86405 0.75228 0.92764 0.91125 0.91824 0.99260 0.94043 0.97181 0.90358 0.75382 0.84012 0.83089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 10.24 71.98 0.74 -0.49 16 2 C 0.11 0.79 5.86 86.38 0.51 1.29 16 3 N -0.62 -7.22 2.99 -722.24 -2.16 -9.38 16 4 C 0.08 0.62 10.17 127.77 1.30 1.92 16 5 C 0.24 4.15 6.55 38.47 0.25 4.40 16 6 C -0.21 -4.23 9.18 22.36 0.21 -4.03 16 7 C -0.02 -0.61 9.58 22.50 0.22 -0.40 16 8 C -0.22 -6.13 5.88 -20.07 -0.12 -6.25 16 9 C 0.56 19.80 7.73 86.69 0.67 20.47 16 10 O -0.60 -26.77 16.00 -4.02 -0.06 -26.84 16 11 N -0.70 -22.49 4.87 -445.59 -2.17 -24.66 16 12 C 0.17 6.54 2.12 45.02 0.10 6.63 16 13 H 0.05 2.39 7.58 -2.39 -0.02 2.38 16 14 C -0.13 -5.42 5.63 30.53 0.17 -5.25 16 15 C 0.18 9.30 5.28 86.22 0.45 9.76 16 16 N -0.60 -30.45 3.00 -699.95 -2.10 -32.55 16 17 C -0.27 -14.31 9.58 84.03 0.81 -13.51 16 18 H 0.08 3.95 7.88 -2.91 -0.02 3.92 16 19 C -0.05 -2.96 4.92 84.86 0.42 -2.55 16 20 N -0.94 -56.57 11.18 21.65 0.24 -56.33 16 21 Si 0.97 44.42 29.59 68.60 2.03 46.45 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 C 0.12 4.84 6.14 86.37 0.53 5.37 16 26 C 0.10 3.46 3.14 30.67 0.10 3.56 16 27 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 28 O -0.57 -16.22 13.16 -148.98 -1.96 -18.18 16 29 C -0.03 -0.59 9.53 22.50 0.21 -0.38 16 30 C -0.21 -3.49 9.18 22.36 0.21 -3.28 16 31 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.09 0.36 8.07 -2.39 -0.02 0.34 16 35 H 0.08 0.55 6.17 -2.38 -0.01 0.54 16 36 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.09 0.36 8.07 -2.39 -0.02 0.34 16 38 H 0.07 0.57 6.17 -2.39 -0.01 0.56 16 39 H 0.14 2.22 6.11 -2.91 -0.02 2.20 16 40 H 0.12 3.37 7.64 -2.91 -0.02 3.35 16 41 H 0.41 10.24 6.62 -92.71 -0.61 9.62 16 42 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 43 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 44 H 0.06 3.63 6.05 -2.39 -0.01 3.62 16 45 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 46 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 47 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.08 2.89 7.93 -2.39 -0.02 2.87 16 49 H 0.40 7.36 9.08 -74.06 -0.67 6.69 16 50 H 0.14 2.29 6.39 -2.91 -0.02 2.27 16 51 H 0.15 1.73 6.11 -2.91 -0.02 1.71 16 Total: -1.00 -76.98 404.30 0.25 -76.74 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -0.33 Total: 27.46 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 6.76 Total: 17.28 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -6.19 Total: -122.92 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -2.03 Total: -45.01 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -76.98 0.25 -76.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090846325.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.393 kcal (2) G-P(sol) polarization free energy of solvation -76.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds