Wall clock time and date at job start Wed Apr 1 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47201 * 2 1 4 4 C 1.46507 * 119.99790 * 89.99663 * 3 2 1 5 5 C 1.50701 * 109.46418 * 90.00549 * 4 3 2 6 6 O 1.21283 * 120.00424 * 359.97438 * 5 4 3 7 7 N 1.34785 * 119.99476 * 180.02562 * 5 4 3 8 8 C 1.46500 * 119.99792 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.44803 * 35.03195 * 8 7 5 10 10 C 1.53037 * 109.46070 * 275.06786 * 8 7 5 11 11 C 1.53194 * 109.31396 * 301.34542 * 10 8 7 12 12 N 1.46931 * 108.77251 * 305.36770 * 11 10 8 13 13 C 1.36936 * 120.62728 * 233.60968 * 12 11 10 14 14 H 1.07997 * 120.00481 * 27.67733 * 13 12 11 15 15 C 1.38817 * 119.99703 * 207.68603 * 13 12 11 16 16 N 1.31619 * 120.00022 * 17.34735 * 15 13 12 17 17 Si 1.86794 * 119.99665 * 197.35806 * 15 13 12 18 18 H 1.48501 * 109.47584 * 59.99354 * 17 15 13 19 19 H 1.48497 * 109.47225 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47222 * 299.99253 * 17 15 13 21 21 C 1.46922 * 118.74125 * 53.60669 * 12 11 10 22 22 C 1.53044 * 109.45868 * 154.99752 * 8 7 5 23 23 H 1.08998 * 109.49260 * 178.61079 * 22 8 7 24 24 O 1.42901 * 109.49697 * 298.70403 * 22 8 7 25 25 C 1.39671 * 119.99989 * 270.00664 * 3 2 1 26 26 C 1.38915 * 120.07337 * 179.72187 * 25 3 2 27 27 C 1.38099 * 119.92194 * 179.76409 * 26 25 3 28 28 C 1.38281 * 120.08042 * 0.50708 * 27 26 25 29 29 C 1.38288 * 120.14472 * 359.74784 * 28 27 26 30 30 C 1.38099 * 120.07802 * 359.97438 * 29 28 27 31 31 H 1.09000 * 109.47037 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47046 * 299.99430 * 1 2 3 33 33 H 1.08996 * 109.47532 * 59.99883 * 1 2 3 34 34 H 1.09000 * 109.47441 * 240.00214 * 2 1 3 35 35 H 1.08996 * 109.47532 * 120.00116 * 2 1 3 36 36 H 1.08994 * 109.47269 * 330.00987 * 4 3 2 37 37 H 1.08993 * 109.46927 * 210.00261 * 4 3 2 38 38 H 0.96998 * 120.00037 * 359.97438 * 7 5 4 39 39 H 1.08998 * 109.49588 * 61.29810 * 10 8 7 40 40 H 1.09003 * 109.49721 * 181.39572 * 10 8 7 41 41 H 1.09004 * 109.58460 * 65.14740 * 11 10 8 42 42 H 1.08998 * 109.58844 * 185.58133 * 11 10 8 43 43 H 0.97003 * 119.99445 * 180.02562 * 16 15 13 44 44 H 1.09003 * 109.58756 * 186.60316 * 21 12 11 45 45 H 1.09005 * 109.58902 * 66.18054 * 21 12 11 46 46 H 0.96701 * 113.99717 * 180.02562 * 24 22 8 47 47 H 1.08000 * 120.03533 * 359.97438 * 26 25 3 48 48 H 1.08010 * 119.96004 * 180.25059 * 27 26 25 49 49 H 1.07994 * 119.93170 * 179.76322 * 28 27 26 50 50 H 1.08006 * 119.96097 * 180.02562 * 29 28 27 51 51 H 1.08000 * 120.04145 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6858 1.8350 1.7037 6 8 4.4234 1.1559 1.0214 7 7 4.1386 2.3772 2.8516 8 6 5.5221 2.1465 3.2748 9 1 6.1676 2.1038 2.3975 10 6 5.6083 0.8218 4.0361 11 6 4.6737 0.8726 5.2489 12 7 5.0087 2.0547 6.0547 13 6 5.2829 1.9334 7.3908 14 1 5.6907 1.0108 7.7768 15 6 5.0366 2.9961 8.2492 16 7 4.2421 3.9756 7.8728 17 14 5.8330 3.0362 9.9384 18 1 7.3105 3.0302 9.7895 19 1 5.4130 4.2674 10.6546 20 1 5.4089 1.8430 10.7140 21 6 5.0438 3.3694 5.3997 22 6 5.9742 3.2906 4.1853 23 1 6.9951 3.1070 4.5203 24 8 5.9226 4.5231 3.4639 25 6 2.2510 2.0397 -1.2096 26 6 2.7085 3.3513 -1.2114 27 6 2.9422 3.9978 -2.4091 28 6 2.7113 3.3445 -3.6058 29 6 2.2507 2.0406 -3.6077 30 6 2.0204 1.3862 -2.4135 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.5817 1.6876 2.0284 37 1 2.0954 3.1410 1.1385 38 1 3.5486 2.9200 3.3975 39 1 5.3085 0.0048 3.3798 40 1 6.6326 0.6616 4.3727 41 1 3.6398 0.9420 4.9107 42 1 4.8046 -0.0277 5.8491 43 1 4.0703 4.7184 8.4725 44 1 5.4188 4.1164 6.0994 45 1 4.0400 3.6423 5.0739 46 1 6.1969 5.2930 3.9807 47 1 2.8846 3.8637 -0.2771 48 1 3.3018 5.0162 -2.4112 49 1 2.8912 3.8536 -4.5411 50 1 2.0717 1.5330 -4.5441 51 1 1.6612 0.3677 -2.4156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100122440.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:52 Heat of formation + Delta-G solvation = -22.204735 kcal Electronic energy + Delta-G solvation = -31700.477159 eV Core-core repulsion = 27600.667510 eV Total energy + Delta-G solvation = -4099.809650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.20167 -39.29762 -37.85723 -36.27117 -35.31619 -34.05201 -32.22020 -31.79851 -30.71345 -30.16811 -29.33965 -28.83839 -26.61010 -25.26330 -23.50652 -22.52643 -22.17737 -21.83261 -21.14651 -20.06814 -18.74538 -17.85800 -17.23842 -16.93567 -16.57428 -16.05553 -15.66555 -15.15785 -15.07795 -14.85067 -14.48502 -14.35412 -14.01887 -13.83457 -13.79900 -13.66289 -13.38178 -13.14053 -13.06164 -12.74393 -12.53968 -12.33553 -12.19090 -11.88946 -11.83142 -11.66146 -11.38651 -11.20605 -11.12262 -11.05013 -10.85566 -10.75275 -10.49161 -10.26700 -10.23969 -10.04387 -9.68502 -9.43915 -9.33167 -8.88708 -8.69226 -8.55306 -7.30651 -6.83667 -5.94066 -3.37152 1.47601 1.64770 2.87358 2.91382 3.29569 3.35924 3.37232 3.61761 3.96287 4.36097 4.57023 4.72710 4.79258 4.97884 5.00665 5.08471 5.12175 5.18777 5.21302 5.29630 5.32098 5.36531 5.43875 5.47710 5.51652 5.60721 5.68474 5.70408 5.79607 5.80816 5.89870 6.00210 6.02597 6.04223 6.21456 6.28451 6.40806 6.41469 6.51007 6.66142 6.66434 6.76019 6.86611 6.94253 7.00928 7.17276 7.35937 7.47555 7.65924 7.89254 8.06251 8.29548 8.55734 9.04635 9.67436 10.22959 11.14014 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.002574 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.757304 B =10876.777667 C =11506.397932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.605 5.605 4 C 0.103 3.897 5 C 0.488 3.512 6 O -0.538 6.538 7 N -0.705 5.705 8 C 0.167 3.833 9 H 0.076 0.924 10 C -0.144 4.144 11 C 0.147 3.853 12 N -0.588 5.588 13 C -0.256 4.256 14 H 0.068 0.932 15 C 0.004 3.996 16 N -0.903 5.903 17 Si 0.904 3.096 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.147 3.853 22 C 0.067 3.933 23 H 0.060 0.940 24 O -0.573 6.573 25 C 0.229 3.771 26 C -0.194 4.194 27 C -0.072 4.072 28 C -0.185 4.185 29 C -0.076 4.076 30 C -0.197 4.197 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.403 0.597 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.019 0.981 42 H 0.056 0.944 43 H 0.256 0.744 44 H 0.092 0.908 45 H 0.024 0.976 46 H 0.376 0.624 47 H 0.118 0.882 48 H 0.118 0.882 49 H 0.114 0.886 50 H 0.117 0.883 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.879 -2.222 -16.906 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 N -0.314 5.314 4 C -0.025 4.025 5 C 0.272 3.728 6 O -0.415 6.415 7 N -0.358 5.358 8 C 0.062 3.938 9 H 0.094 0.906 10 C -0.184 4.184 11 C 0.021 3.979 12 N -0.312 5.312 13 C -0.385 4.385 14 H 0.085 0.915 15 C -0.195 4.195 16 N -0.547 5.547 17 Si 0.734 3.266 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.208 1.208 21 C 0.020 3.980 22 C 0.006 3.994 23 H 0.078 0.922 24 O -0.377 6.377 25 C 0.128 3.872 26 C -0.216 4.216 27 C -0.091 4.091 28 C -0.205 4.205 29 C -0.094 4.094 30 C -0.219 4.219 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.239 0.761 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.037 0.963 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.042 0.958 46 H 0.222 0.778 47 H 0.136 0.864 48 H 0.136 0.864 49 H 0.132 0.868 50 H 0.135 0.865 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.649 -3.067 -17.597 18.734 hybrid contribution 0.414 0.726 1.808 1.992 sum -5.236 -2.341 -15.788 16.797 Atomic orbital electron populations 1.22244 0.96333 1.01949 1.02500 1.21368 0.93468 0.82083 1.03095 1.46072 1.70319 1.13217 1.01780 1.21301 0.94171 0.99793 0.87188 1.21293 0.90380 0.80114 0.80994 1.90674 1.57886 1.38955 1.53992 1.46021 1.13874 1.52599 1.23305 1.20763 0.82505 0.93926 0.96582 0.90568 1.22391 1.01799 0.95851 0.98361 1.20904 0.94711 0.91299 0.91005 1.43959 1.80445 1.01209 1.05571 1.19160 1.35800 1.00758 0.82823 0.91478 1.25047 0.97820 0.98783 0.97871 1.70004 1.35862 1.11920 1.36886 0.86346 0.79366 0.77114 0.83820 1.20973 1.21578 1.20787 1.21391 0.95431 0.89847 0.91315 1.22936 1.00139 0.83229 0.93110 0.92174 1.86415 1.91204 1.17296 1.42791 1.17776 0.92614 0.91237 0.85584 1.20689 1.07968 0.94242 0.98706 1.20863 0.97019 0.99198 0.91990 1.20848 1.06184 0.95827 0.97656 1.20835 0.97054 0.94556 0.97002 1.20629 1.09688 1.00495 0.91083 0.91774 0.92395 0.92311 0.90608 0.90769 0.87835 0.87869 0.76097 0.91885 0.91258 0.96288 0.92559 0.93449 0.88963 0.95771 0.77769 0.86386 0.86408 0.86803 0.86543 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.24 37.16 0.38 -1.05 16 2 C 0.12 1.27 5.88 -4.04 -0.02 1.25 16 3 N -0.61 -7.39 2.09 -173.12 -0.36 -7.76 16 4 C 0.10 1.24 5.65 -5.19 -0.03 1.21 16 5 C 0.49 7.62 7.86 -10.98 -0.09 7.54 16 6 O -0.54 -10.29 16.09 5.55 0.09 -10.20 16 7 N -0.71 -11.26 4.15 -53.76 -0.22 -11.48 16 8 C 0.17 2.94 2.47 -67.89 -0.17 2.78 16 9 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 10 C -0.14 -2.53 5.77 -26.61 -0.15 -2.69 16 11 C 0.15 2.90 6.26 -3.71 -0.02 2.88 16 12 N -0.59 -13.52 2.99 -172.31 -0.52 -14.04 16 13 C -0.26 -6.59 9.59 -15.06 -0.14 -6.74 16 14 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 15 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 16 N -0.90 -24.37 11.19 55.49 0.62 -23.75 16 17 Si 0.90 20.63 29.59 -169.99 -5.03 15.60 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.15 3.13 4.64 -3.71 -0.02 3.11 16 22 C 0.07 1.21 3.36 -26.61 -0.09 1.12 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 24 O -0.57 -9.53 13.21 -35.23 -0.47 -10.00 16 25 C 0.23 3.00 6.55 -83.79 -0.55 2.45 16 26 C -0.19 -2.54 9.21 -39.38 -0.36 -2.91 16 27 C -0.07 -0.85 10.04 -39.62 -0.40 -1.25 16 28 C -0.19 -2.04 10.04 -39.55 -0.40 -2.44 16 29 C -0.08 -0.82 10.04 -39.61 -0.40 -1.22 16 30 C -0.20 -2.33 9.21 -39.38 -0.36 -2.69 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.77 6.20 -51.93 -0.32 0.45 16 35 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.10 1.04 8.07 -51.93 -0.42 0.62 16 37 H 0.10 1.11 6.19 -51.93 -0.32 0.79 16 38 H 0.40 6.30 6.87 -40.82 -0.28 6.02 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.02 0.38 7.74 -51.93 -0.40 -0.02 16 42 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 43 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 44 H 0.09 2.21 6.04 -51.93 -0.31 1.90 16 45 H 0.02 0.53 6.64 -51.93 -0.34 0.19 16 46 H 0.38 5.00 9.08 45.56 0.41 5.41 16 47 H 0.12 1.52 6.14 -52.49 -0.32 1.20 16 48 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 49 H 0.11 1.01 8.06 -52.49 -0.42 0.59 16 50 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 51 H 0.12 1.23 6.14 -52.49 -0.32 0.91 16 LS Contribution 404.24 15.07 6.09 6.09 Total: -1.00 -31.06 404.24 -9.91 -40.97 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -7.21 Total: 13.20 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -2.91 Total: 1.36 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.48 Total: -57.03 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.38 Total: -20.19 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.06 -9.91 -40.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100122440.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.768 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds