Wall clock time and date at job start Wed Apr 1 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47201 * 2 1 4 4 C 1.46507 * 119.99790 * 89.99663 * 3 2 1 5 5 C 1.50701 * 109.46418 * 90.00549 * 4 3 2 6 6 O 1.21283 * 120.00424 * 359.97438 * 5 4 3 7 7 N 1.34785 * 119.99476 * 180.02562 * 5 4 3 8 8 C 1.46500 * 119.99792 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.44803 * 35.03195 * 8 7 5 10 10 C 1.53037 * 109.46070 * 275.06786 * 8 7 5 11 11 C 1.53194 * 109.31396 * 301.34542 * 10 8 7 12 12 N 1.46931 * 108.77251 * 305.36770 * 11 10 8 13 13 C 1.36936 * 120.62728 * 233.60968 * 12 11 10 14 14 H 1.07997 * 120.00481 * 27.67733 * 13 12 11 15 15 C 1.38817 * 119.99703 * 207.68603 * 13 12 11 16 16 N 1.31619 * 120.00022 * 17.34735 * 15 13 12 17 17 Si 1.86794 * 119.99665 * 197.35806 * 15 13 12 18 18 H 1.48501 * 109.47584 * 59.99354 * 17 15 13 19 19 H 1.48497 * 109.47225 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47222 * 299.99253 * 17 15 13 21 21 C 1.46922 * 118.74125 * 53.60669 * 12 11 10 22 22 C 1.53044 * 109.45868 * 154.99752 * 8 7 5 23 23 H 1.08998 * 109.49260 * 178.61079 * 22 8 7 24 24 O 1.42901 * 109.49697 * 298.70403 * 22 8 7 25 25 C 1.39671 * 119.99989 * 270.00664 * 3 2 1 26 26 C 1.38915 * 120.07337 * 179.72187 * 25 3 2 27 27 C 1.38099 * 119.92194 * 179.76409 * 26 25 3 28 28 C 1.38281 * 120.08042 * 0.50708 * 27 26 25 29 29 C 1.38288 * 120.14472 * 359.74784 * 28 27 26 30 30 C 1.38099 * 120.07802 * 359.97438 * 29 28 27 31 31 H 1.09000 * 109.47037 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47046 * 299.99430 * 1 2 3 33 33 H 1.08996 * 109.47532 * 59.99883 * 1 2 3 34 34 H 1.09000 * 109.47441 * 240.00214 * 2 1 3 35 35 H 1.08996 * 109.47532 * 120.00116 * 2 1 3 36 36 H 1.08994 * 109.47269 * 330.00987 * 4 3 2 37 37 H 1.08993 * 109.46927 * 210.00261 * 4 3 2 38 38 H 0.96998 * 120.00037 * 359.97438 * 7 5 4 39 39 H 1.08998 * 109.49588 * 61.29810 * 10 8 7 40 40 H 1.09003 * 109.49721 * 181.39572 * 10 8 7 41 41 H 1.09004 * 109.58460 * 65.14740 * 11 10 8 42 42 H 1.08998 * 109.58844 * 185.58133 * 11 10 8 43 43 H 0.97003 * 119.99445 * 180.02562 * 16 15 13 44 44 H 1.09003 * 109.58756 * 186.60316 * 21 12 11 45 45 H 1.09005 * 109.58902 * 66.18054 * 21 12 11 46 46 H 0.96701 * 113.99717 * 180.02562 * 24 22 8 47 47 H 1.08000 * 120.03533 * 359.97438 * 26 25 3 48 48 H 1.08010 * 119.96004 * 180.25059 * 27 26 25 49 49 H 1.07994 * 119.93170 * 179.76322 * 28 27 26 50 50 H 1.08006 * 119.96097 * 180.02562 * 29 28 27 51 51 H 1.08000 * 120.04145 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6858 1.8350 1.7037 6 8 4.4234 1.1559 1.0214 7 7 4.1386 2.3772 2.8516 8 6 5.5221 2.1465 3.2748 9 1 6.1676 2.1038 2.3975 10 6 5.6083 0.8218 4.0361 11 6 4.6737 0.8726 5.2489 12 7 5.0087 2.0547 6.0547 13 6 5.2829 1.9334 7.3908 14 1 5.6907 1.0108 7.7768 15 6 5.0366 2.9961 8.2492 16 7 4.2421 3.9756 7.8728 17 14 5.8330 3.0362 9.9384 18 1 7.3105 3.0302 9.7895 19 1 5.4130 4.2674 10.6546 20 1 5.4089 1.8430 10.7140 21 6 5.0438 3.3694 5.3997 22 6 5.9742 3.2906 4.1853 23 1 6.9951 3.1070 4.5203 24 8 5.9226 4.5231 3.4639 25 6 2.2510 2.0397 -1.2096 26 6 2.7085 3.3513 -1.2114 27 6 2.9422 3.9978 -2.4091 28 6 2.7113 3.3445 -3.6058 29 6 2.2507 2.0406 -3.6077 30 6 2.0204 1.3862 -2.4135 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.5817 1.6876 2.0284 37 1 2.0954 3.1410 1.1385 38 1 3.5486 2.9200 3.3975 39 1 5.3085 0.0048 3.3798 40 1 6.6326 0.6616 4.3727 41 1 3.6398 0.9420 4.9107 42 1 4.8046 -0.0277 5.8491 43 1 4.0703 4.7184 8.4725 44 1 5.4188 4.1164 6.0994 45 1 4.0400 3.6423 5.0739 46 1 6.1969 5.2930 3.9807 47 1 2.8846 3.8637 -0.2771 48 1 3.3018 5.0162 -2.4112 49 1 2.8912 3.8536 -4.5411 50 1 2.0717 1.5330 -4.5441 51 1 1.6612 0.3677 -2.4156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100122440.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:51 Heat of formation + Delta-G solvation = -41.376630 kcal Electronic energy + Delta-G solvation = -31701.308515 eV Core-core repulsion = 27600.667510 eV Total energy + Delta-G solvation = -4100.641005 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.39532 -40.41140 -39.21567 -37.20518 -36.85989 -35.60876 -33.75462 -32.79206 -31.69168 -31.45264 -30.69334 -30.21434 -27.70823 -26.91815 -24.38264 -24.03256 -23.51796 -23.09419 -22.27322 -21.09766 -20.26329 -18.93118 -18.66538 -18.30661 -18.07588 -17.08870 -16.85303 -16.65496 -16.29427 -16.01954 -15.85644 -15.52864 -15.40203 -15.18791 -15.00119 -14.85776 -14.60374 -14.27756 -14.05568 -13.94590 -13.86041 -13.52423 -13.33959 -13.27763 -12.96288 -12.87766 -12.71764 -12.67958 -12.63546 -12.20925 -12.19868 -11.99010 -11.96375 -11.83234 -11.59934 -11.31798 -11.23247 -10.95174 -10.57648 -10.53453 -9.98792 -9.77174 -8.71025 -8.21420 -7.90180 -5.35120 0.59047 0.75721 1.48312 1.50584 1.56497 1.68250 1.91896 2.45101 2.50344 3.06226 3.13731 3.26827 3.66395 3.80346 3.89186 3.93994 4.00406 4.13709 4.15229 4.24576 4.25683 4.29552 4.35490 4.41174 4.45666 4.48005 4.57225 4.66523 4.66950 4.71250 4.81652 4.90323 4.94291 4.96946 5.02401 5.07864 5.16065 5.20365 5.31885 5.35464 5.41618 5.56735 5.59226 5.65574 5.65636 5.79194 6.02209 6.26595 6.34696 6.56912 6.64413 6.81915 7.12388 7.29824 7.80271 8.31595 9.15180 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.002574 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.757304 B =10876.777667 C =11506.397932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 N -0.609 5.609 4 C 0.108 3.892 5 C 0.490 3.510 6 O -0.574 6.574 7 N -0.703 5.703 8 C 0.171 3.829 9 H 0.066 0.934 10 C -0.130 4.130 11 C 0.149 3.851 12 N -0.602 5.602 13 C -0.266 4.266 14 H 0.066 0.934 15 C -0.042 4.042 16 N -0.927 5.927 17 Si 0.962 3.038 18 H -0.280 1.280 19 H -0.294 1.294 20 H -0.279 1.279 21 C 0.159 3.841 22 C 0.084 3.916 23 H 0.057 0.943 24 O -0.573 6.573 25 C 0.210 3.790 26 C -0.216 4.216 27 C -0.083 4.083 28 C -0.191 4.191 29 C -0.079 4.079 30 C -0.207 4.207 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.406 0.594 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.022 0.978 42 H 0.055 0.945 43 H 0.252 0.748 44 H 0.064 0.936 45 H 0.015 0.985 46 H 0.391 0.609 47 H 0.113 0.887 48 H 0.132 0.868 49 H 0.136 0.864 50 H 0.142 0.858 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 -2.626 -17.977 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.003 4.003 3 N -0.318 5.318 4 C -0.020 4.020 5 C 0.276 3.724 6 O -0.453 6.453 7 N -0.355 5.355 8 C 0.066 3.934 9 H 0.084 0.916 10 C -0.170 4.170 11 C 0.024 3.976 12 N -0.327 5.327 13 C -0.396 4.396 14 H 0.083 0.917 15 C -0.238 4.238 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.206 1.206 19 H -0.220 1.220 20 H -0.204 1.204 21 C 0.033 3.967 22 C 0.023 3.977 23 H 0.075 0.925 24 O -0.380 6.380 25 C 0.109 3.891 26 C -0.239 4.239 27 C -0.102 4.102 28 C -0.210 4.210 29 C -0.097 4.097 30 C -0.229 4.229 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.242 0.758 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.033 0.967 46 H 0.240 0.760 47 H 0.131 0.869 48 H 0.149 0.851 49 H 0.154 0.846 50 H 0.160 0.840 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.096 -3.472 -18.681 19.955 hybrid contribution 0.558 0.848 2.067 2.303 sum -5.538 -2.624 -16.613 17.707 Atomic orbital electron populations 1.22145 0.94611 1.02912 1.02274 1.21472 0.94780 0.81230 1.02785 1.46206 1.70305 1.13789 1.01523 1.21351 0.91941 1.00824 0.87853 1.21957 0.91514 0.78898 0.80067 1.90652 1.59197 1.40573 1.54899 1.45999 1.13194 1.52685 1.23634 1.20612 0.83407 0.93593 0.95829 0.91625 1.22231 1.01281 0.96126 0.97373 1.20947 0.95284 0.90092 0.91275 1.44156 1.80750 1.02510 1.05280 1.19423 1.35301 1.00712 0.84180 0.91669 1.25679 0.98499 0.98752 1.00870 1.70126 1.37037 1.12305 1.37746 0.85427 0.78495 0.76732 0.80274 1.20633 1.22025 1.20448 1.21191 0.95417 0.88534 0.91573 1.22595 0.98993 0.84148 0.91979 0.92506 1.86396 1.91235 1.17466 1.42865 1.18022 0.93209 0.91532 0.86324 1.20820 1.09190 0.94754 0.99089 1.21136 0.96963 1.00014 0.92043 1.21179 1.05517 0.96087 0.98247 1.21202 0.96094 0.94640 0.97776 1.20884 1.09725 1.01168 0.91092 0.90192 0.92471 0.92593 0.90593 0.91414 0.85646 0.86653 0.75782 0.91271 0.91143 0.95994 0.92678 0.93929 0.91746 0.96664 0.75986 0.86937 0.85057 0.84627 0.83991 0.85055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 10.24 71.98 0.74 -1.67 16 2 C 0.12 2.35 5.88 86.38 0.51 2.86 16 3 N -0.61 -14.37 2.09 -701.63 -1.47 -15.84 16 4 C 0.11 2.49 5.65 85.63 0.48 2.97 16 5 C 0.49 15.01 7.86 87.66 0.69 15.70 16 6 O -0.57 -21.80 16.09 -3.04 -0.05 -21.85 16 7 N -0.70 -22.02 4.15 -442.39 -1.84 -23.86 16 8 C 0.17 5.93 2.47 45.02 0.11 6.04 16 9 H 0.07 2.47 7.58 -2.38 -0.02 2.45 16 10 C -0.13 -4.48 5.77 30.67 0.18 -4.31 16 11 C 0.15 5.82 6.26 86.36 0.54 6.36 16 12 N -0.60 -27.67 2.99 -699.08 -2.09 -29.76 16 13 C -0.27 -13.68 9.59 84.03 0.81 -12.88 16 14 H 0.07 3.31 7.89 -2.91 -0.02 3.29 16 15 C -0.04 -2.18 4.91 84.86 0.42 -1.76 16 16 N -0.93 -50.45 11.19 21.65 0.24 -50.21 16 17 Si 0.96 42.43 29.59 68.60 2.03 44.46 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 21 C 0.16 6.80 4.64 86.36 0.40 7.20 16 22 C 0.08 3.00 3.36 30.67 0.10 3.11 16 23 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 24 O -0.57 -18.60 13.21 -148.98 -1.97 -20.57 16 25 C 0.21 5.35 6.55 38.22 0.25 5.60 16 26 C -0.22 -5.59 9.21 22.40 0.21 -5.38 16 27 C -0.08 -1.89 10.04 22.25 0.22 -1.66 16 28 C -0.19 -3.86 10.04 22.29 0.22 -3.64 16 29 C -0.08 -1.56 10.04 22.25 0.22 -1.33 16 30 C -0.21 -4.62 9.21 22.40 0.21 -4.42 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.46 6.20 -2.39 -0.01 1.45 16 35 H 0.07 1.40 8.07 -2.39 -0.02 1.38 16 36 H 0.13 2.33 8.07 -2.39 -0.02 2.31 16 37 H 0.12 2.39 6.19 -2.39 -0.01 2.38 16 38 H 0.41 12.43 6.87 -92.71 -0.64 11.79 16 39 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.02 0.85 7.74 -2.38 -0.02 0.83 16 42 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 43 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 44 H 0.06 3.13 6.04 -2.39 -0.01 3.12 16 45 H 0.02 0.68 6.64 -2.38 -0.02 0.66 16 46 H 0.39 10.05 9.08 -74.06 -0.67 9.38 16 47 H 0.11 2.90 6.14 -2.91 -0.02 2.88 16 48 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 49 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 50 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 51 H 0.13 2.51 6.14 -2.91 -0.02 2.49 16 Total: -1.00 -65.70 404.24 0.80 -64.90 By element: Atomic # 1 Polarization: 40.28 SS G_CDS: -0.36 Total: 39.93 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 6.31 Total: 12.79 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -5.16 Total: -119.67 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -2.02 Total: -42.41 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -65.70 0.80 -64.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100122440.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.527 kcal (2) G-P(sol) polarization free energy of solvation -65.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds