Wall clock time and date at job start Wed Apr 1 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46971 * 2 1 4 4 C 1.46504 * 119.99904 * 90.00262 * 3 2 1 5 5 C 1.50697 * 109.47414 * 90.00056 * 4 3 2 6 6 O 1.21280 * 119.99907 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00262 * 180.02562 * 5 4 3 8 8 C 1.46497 * 120.00093 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.45979 * 324.99347 * 8 7 5 10 10 C 1.53043 * 109.46221 * 84.96949 * 8 7 5 11 11 C 1.53187 * 109.31359 * 58.65418 * 10 8 7 12 12 N 1.46932 * 108.77472 * 54.63522 * 11 10 8 13 13 C 1.36942 * 120.62863 * 126.36974 * 12 11 10 14 14 H 1.07990 * 119.99716 * 331.83344 * 13 12 11 15 15 C 1.38809 * 119.99654 * 151.83236 * 13 12 11 16 16 N 1.31622 * 120.00386 * 343.08160 * 15 13 12 17 17 Si 1.86797 * 119.99934 * 163.08074 * 15 13 12 18 18 H 1.48502 * 109.46873 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47497 * 120.00199 * 17 15 13 20 20 H 1.48498 * 109.47218 * 240.00261 * 17 15 13 21 21 C 1.46921 * 118.73812 * 306.39092 * 12 11 10 22 22 C 1.53038 * 109.45906 * 205.02233 * 8 7 5 23 23 H 1.08995 * 109.50145 * 181.39131 * 22 8 7 24 24 O 1.42901 * 109.49763 * 61.29569 * 22 8 7 25 25 C 1.39674 * 120.00128 * 270.00001 * 3 2 1 26 26 C 1.38914 * 120.07440 * 179.72015 * 25 3 2 27 27 C 1.38109 * 119.92224 * 179.76845 * 26 25 3 28 28 C 1.38283 * 120.07484 * 0.51282 * 27 26 25 29 29 C 1.38293 * 120.15113 * 359.74110 * 28 27 26 30 30 C 1.38105 * 120.07153 * 0.02562 * 29 28 27 31 31 H 1.08996 * 109.47271 * 299.99439 * 1 2 3 32 32 H 1.08995 * 109.47201 * 60.00138 * 1 2 3 33 33 H 1.09003 * 109.46619 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47109 * 240.00103 * 2 1 3 35 35 H 1.09002 * 109.47866 * 119.99932 * 2 1 3 36 36 H 1.08999 * 109.47039 * 210.00375 * 4 3 2 37 37 H 1.08998 * 109.46982 * 330.00002 * 4 3 2 38 38 H 0.97000 * 119.99589 * 359.97438 * 7 5 4 39 39 H 1.08997 * 109.49387 * 178.60793 * 10 8 7 40 40 H 1.08995 * 109.49448 * 298.70348 * 10 8 7 41 41 H 1.08998 * 109.59218 * 174.42331 * 11 10 8 42 42 H 1.09007 * 109.58898 * 294.85125 * 11 10 8 43 43 H 0.96997 * 120.00076 * 180.02562 * 16 15 13 44 44 H 1.08996 * 109.58543 * 173.39877 * 21 12 11 45 45 H 1.09004 * 109.58660 * 293.81946 * 21 12 11 46 46 H 0.96701 * 114.00533 * 180.02562 * 24 22 8 47 47 H 1.07997 * 120.03590 * 0.02562 * 26 25 3 48 48 H 1.07996 * 119.95912 * 180.25498 * 27 26 25 49 49 H 1.07993 * 119.92739 * 179.76314 * 28 27 26 50 50 H 1.08002 * 119.96311 * 180.02562 * 29 28 27 51 51 H 1.08005 * 120.03367 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2688 5 6 3.6858 1.8351 1.7038 6 8 4.4234 1.1560 1.0215 7 7 4.1387 2.3772 2.8516 8 6 5.5224 2.1475 3.2742 9 1 5.8280 1.1417 2.9858 10 6 6.4382 3.1717 2.5998 11 6 5.9847 4.5846 2.9800 12 7 5.9388 4.6885 4.4449 13 6 6.6099 5.6898 5.0947 14 1 7.5005 6.1155 4.6567 15 6 6.1454 6.1575 6.3163 16 7 4.9121 5.8966 6.6951 17 14 7.2706 7.1570 7.4228 18 1 8.5968 7.3092 6.7722 19 1 6.6749 8.4976 7.6532 20 1 7.4347 6.4583 8.7228 21 6 5.1596 3.6973 5.1993 22 6 5.6224 2.2947 4.7942 23 1 6.6563 2.1483 5.1067 24 8 4.7905 1.3180 5.4236 25 6 2.2511 2.0397 -1.2096 26 6 2.7085 3.3514 -1.2114 27 6 2.9422 3.9979 -2.4092 28 6 2.7113 3.3445 -3.6059 29 6 2.2508 2.0405 -3.6077 30 6 2.0196 1.3865 -2.4135 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8935 -0.5138 0.8900 36 1 2.0954 3.1411 1.1385 37 1 1.5817 1.6877 2.0284 38 1 3.5486 2.9201 3.3975 39 1 7.4644 3.0170 2.9330 40 1 6.3843 3.0511 1.5179 41 1 6.6910 5.3142 2.5839 42 1 4.9927 4.7730 2.5691 43 1 4.5875 6.2238 7.5486 44 1 5.3216 3.8414 6.2674 45 1 4.1004 3.8134 4.9693 46 1 4.8045 1.3533 6.3899 47 1 2.8852 3.8635 -0.2771 48 1 3.3018 5.0162 -2.4113 49 1 2.8912 3.8536 -4.5412 50 1 2.0718 1.5330 -4.5441 51 1 1.6596 0.3682 -2.4157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100122443.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:05 Heat of formation + Delta-G solvation = -22.349108 kcal Electronic energy + Delta-G solvation = -31804.457592 eV Core-core repulsion = 27704.641682 eV Total energy + Delta-G solvation = -4099.815910 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.19667 -39.28541 -37.85524 -36.26441 -35.31903 -34.04871 -32.20888 -31.80060 -30.69609 -30.15806 -29.32355 -28.83896 -26.60717 -25.25662 -23.49881 -22.51783 -22.16815 -21.82777 -21.13786 -20.05941 -18.74111 -17.84546 -17.22747 -16.93266 -16.58265 -16.08353 -15.61802 -15.19350 -15.04444 -14.79982 -14.51757 -14.33352 -14.00505 -13.90631 -13.77770 -13.59052 -13.37251 -13.14047 -13.03260 -12.80669 -12.50688 -12.32846 -12.18720 -11.89375 -11.82548 -11.65570 -11.36757 -11.21136 -11.10672 -11.04787 -10.88366 -10.73516 -10.44842 -10.24505 -10.22381 -10.04223 -9.68085 -9.43121 -9.33316 -8.86246 -8.69268 -8.55427 -7.29450 -6.82117 -5.93547 -3.37030 1.49942 1.66878 2.87837 2.91474 3.28194 3.37421 3.39405 3.62042 3.98418 4.36515 4.56588 4.72680 4.79972 4.97774 5.02649 5.09110 5.12739 5.18870 5.22038 5.28213 5.33381 5.37164 5.45180 5.49304 5.52663 5.60367 5.68261 5.70319 5.80383 5.82019 5.90282 6.00862 6.02280 6.05611 6.22252 6.30292 6.41699 6.43848 6.53400 6.68793 6.68914 6.77346 6.88496 6.94753 7.01490 7.18211 7.35930 7.48792 7.67565 7.89337 8.05085 8.30337 8.55836 9.05448 9.68063 10.23786 11.14582 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015034 B = 0.002792 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.940204 B =10026.888036 C =10976.280940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.605 5.605 4 C 0.103 3.897 5 C 0.488 3.512 6 O -0.538 6.538 7 N -0.706 5.706 8 C 0.168 3.832 9 H 0.076 0.924 10 C -0.144 4.144 11 C 0.147 3.853 12 N -0.588 5.588 13 C -0.254 4.254 14 H 0.068 0.932 15 C 0.003 3.997 16 N -0.902 5.902 17 Si 0.903 3.097 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.289 1.289 21 C 0.147 3.853 22 C 0.066 3.934 23 H 0.060 0.940 24 O -0.573 6.573 25 C 0.229 3.771 26 C -0.193 4.193 27 C -0.071 4.071 28 C -0.184 4.184 29 C -0.076 4.076 30 C -0.197 4.197 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.403 0.597 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.020 0.980 43 H 0.254 0.746 44 H 0.092 0.908 45 H 0.024 0.976 46 H 0.376 0.624 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.114 0.886 50 H 0.116 0.884 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.367 -9.443 -12.549 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 N -0.314 5.314 4 C -0.024 4.024 5 C 0.272 3.728 6 O -0.415 6.415 7 N -0.358 5.358 8 C 0.063 3.937 9 H 0.094 0.906 10 C -0.184 4.184 11 C 0.021 3.979 12 N -0.312 5.312 13 C -0.384 4.384 14 H 0.086 0.914 15 C -0.195 4.195 16 N -0.547 5.547 17 Si 0.733 3.267 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.215 1.215 21 C 0.020 3.980 22 C 0.006 3.994 23 H 0.078 0.922 24 O -0.378 6.378 25 C 0.127 3.873 26 C -0.215 4.215 27 C -0.090 4.090 28 C -0.204 4.204 29 C -0.095 4.095 30 C -0.219 4.219 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.239 0.761 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.110 0.890 45 H 0.042 0.958 46 H 0.222 0.778 47 H 0.137 0.863 48 H 0.137 0.863 49 H 0.132 0.868 50 H 0.134 0.866 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.069 -10.135 -13.345 18.598 hybrid contribution 0.478 0.996 1.662 1.995 sum -7.591 -9.139 -11.683 16.663 Atomic orbital electron populations 1.22245 0.96370 1.01889 1.02514 1.21358 0.93436 0.82146 1.03041 1.46059 1.70406 1.13180 1.01793 1.21297 0.94133 0.99850 0.87161 1.21293 0.90328 0.79942 0.81225 1.90673 1.58086 1.39084 1.53669 1.46020 1.13757 1.52606 1.23424 1.20759 0.81424 0.99067 0.92487 0.90607 1.22390 0.99028 0.97398 0.99610 1.20907 0.97983 0.93231 0.85807 1.43973 1.58425 1.29381 0.99427 1.19245 1.04289 1.12243 1.02580 0.91398 1.25058 0.95475 0.98748 1.00264 1.70016 1.13719 1.48938 1.22001 0.86215 0.80359 0.79538 0.80627 1.20180 1.21630 1.21524 1.21376 0.93439 0.84012 0.99134 1.22939 0.93926 0.91115 0.91447 0.92163 1.86405 1.70043 1.57406 1.23937 1.17771 0.92699 0.91250 0.85549 1.20699 1.07883 0.94195 0.98751 1.20883 0.96899 0.99253 0.91965 1.20858 1.06100 0.95801 0.97689 1.20835 0.97095 0.94568 0.96985 1.20620 1.09735 1.00472 0.91092 0.92436 0.92268 0.91823 0.90612 0.90863 0.87797 0.87937 0.76094 0.91281 0.91790 0.92527 0.96243 0.93576 0.89017 0.95769 0.77767 0.86347 0.86313 0.86783 0.86558 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.12 1.27 5.88 -4.04 -0.02 1.24 16 3 N -0.61 -7.41 2.10 -173.12 -0.36 -7.77 16 4 C 0.10 1.24 5.65 -5.19 -0.03 1.21 16 5 C 0.49 7.62 7.86 -10.99 -0.09 7.54 16 6 O -0.54 -10.29 16.09 5.56 0.09 -10.20 16 7 N -0.71 -11.26 4.15 -53.77 -0.22 -11.49 16 8 C 0.17 2.95 2.47 -67.89 -0.17 2.78 16 9 H 0.08 1.43 7.58 -51.93 -0.39 1.03 16 10 C -0.14 -2.57 5.77 -26.61 -0.15 -2.73 16 11 C 0.15 2.94 6.26 -3.71 -0.02 2.91 16 12 N -0.59 -13.58 2.99 -172.34 -0.52 -14.09 16 13 C -0.25 -6.57 9.58 -15.06 -0.14 -6.71 16 14 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 15 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 16 N -0.90 -24.40 11.20 55.49 0.62 -23.78 16 17 Si 0.90 20.68 29.59 -169.99 -5.03 15.65 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.15 3.13 4.63 -3.73 -0.02 3.11 16 22 C 0.07 1.20 3.36 -26.63 -0.09 1.11 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 24 O -0.57 -9.44 13.21 -35.23 -0.47 -9.91 16 25 C 0.23 3.02 6.55 -83.79 -0.55 2.47 16 26 C -0.19 -2.58 9.21 -39.38 -0.36 -2.95 16 27 C -0.07 -0.87 10.04 -39.61 -0.40 -1.27 16 28 C -0.18 -2.09 10.04 -39.54 -0.40 -2.48 16 29 C -0.08 -0.84 10.04 -39.61 -0.40 -1.24 16 30 C -0.20 -2.35 9.21 -39.38 -0.36 -2.71 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.76 6.20 -51.93 -0.32 0.44 16 35 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.10 1.15 6.19 -51.93 -0.32 0.83 16 37 H 0.10 1.01 8.07 -51.93 -0.42 0.59 16 38 H 0.40 6.30 6.87 -40.82 -0.28 6.02 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 42 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 43 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 44 H 0.09 2.20 6.06 -51.93 -0.31 1.89 16 45 H 0.02 0.54 6.64 -51.93 -0.34 0.19 16 46 H 0.38 4.94 9.08 45.56 0.41 5.36 16 47 H 0.12 1.56 6.14 -52.49 -0.32 1.24 16 48 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 49 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 50 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 51 H 0.12 1.23 6.14 -52.48 -0.32 0.91 16 LS Contribution 404.27 15.07 6.09 6.09 Total: -1.00 -31.10 404.27 -9.91 -41.01 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -7.21 Total: 13.21 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -2.91 Total: 1.27 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.48 Total: -57.13 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.38 Total: -20.11 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.10 -9.91 -41.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100122443.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.663 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds