Wall clock time and date at job start Wed Apr 1 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46971 * 2 1 4 4 C 1.46504 * 119.99904 * 90.00262 * 3 2 1 5 5 C 1.50697 * 109.47414 * 90.00056 * 4 3 2 6 6 O 1.21280 * 119.99907 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00262 * 180.02562 * 5 4 3 8 8 C 1.46497 * 120.00093 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.45979 * 324.99347 * 8 7 5 10 10 C 1.53043 * 109.46221 * 84.96949 * 8 7 5 11 11 C 1.53187 * 109.31359 * 58.65418 * 10 8 7 12 12 N 1.46932 * 108.77472 * 54.63522 * 11 10 8 13 13 C 1.36942 * 120.62863 * 126.36974 * 12 11 10 14 14 H 1.07990 * 119.99716 * 331.83344 * 13 12 11 15 15 C 1.38809 * 119.99654 * 151.83236 * 13 12 11 16 16 N 1.31622 * 120.00386 * 343.08160 * 15 13 12 17 17 Si 1.86797 * 119.99934 * 163.08074 * 15 13 12 18 18 H 1.48502 * 109.46873 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47497 * 120.00199 * 17 15 13 20 20 H 1.48498 * 109.47218 * 240.00261 * 17 15 13 21 21 C 1.46921 * 118.73812 * 306.39092 * 12 11 10 22 22 C 1.53038 * 109.45906 * 205.02233 * 8 7 5 23 23 H 1.08995 * 109.50145 * 181.39131 * 22 8 7 24 24 O 1.42901 * 109.49763 * 61.29569 * 22 8 7 25 25 C 1.39674 * 120.00128 * 270.00001 * 3 2 1 26 26 C 1.38914 * 120.07440 * 179.72015 * 25 3 2 27 27 C 1.38109 * 119.92224 * 179.76845 * 26 25 3 28 28 C 1.38283 * 120.07484 * 0.51282 * 27 26 25 29 29 C 1.38293 * 120.15113 * 359.74110 * 28 27 26 30 30 C 1.38105 * 120.07153 * 0.02562 * 29 28 27 31 31 H 1.08996 * 109.47271 * 299.99439 * 1 2 3 32 32 H 1.08995 * 109.47201 * 60.00138 * 1 2 3 33 33 H 1.09003 * 109.46619 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47109 * 240.00103 * 2 1 3 35 35 H 1.09002 * 109.47866 * 119.99932 * 2 1 3 36 36 H 1.08999 * 109.47039 * 210.00375 * 4 3 2 37 37 H 1.08998 * 109.46982 * 330.00002 * 4 3 2 38 38 H 0.97000 * 119.99589 * 359.97438 * 7 5 4 39 39 H 1.08997 * 109.49387 * 178.60793 * 10 8 7 40 40 H 1.08995 * 109.49448 * 298.70348 * 10 8 7 41 41 H 1.08998 * 109.59218 * 174.42331 * 11 10 8 42 42 H 1.09007 * 109.58898 * 294.85125 * 11 10 8 43 43 H 0.96997 * 120.00076 * 180.02562 * 16 15 13 44 44 H 1.08996 * 109.58543 * 173.39877 * 21 12 11 45 45 H 1.09004 * 109.58660 * 293.81946 * 21 12 11 46 46 H 0.96701 * 114.00533 * 180.02562 * 24 22 8 47 47 H 1.07997 * 120.03590 * 0.02562 * 26 25 3 48 48 H 1.07996 * 119.95912 * 180.25498 * 27 26 25 49 49 H 1.07993 * 119.92739 * 179.76314 * 28 27 26 50 50 H 1.08002 * 119.96311 * 180.02562 * 29 28 27 51 51 H 1.08005 * 120.03367 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2688 5 6 3.6858 1.8351 1.7038 6 8 4.4234 1.1560 1.0215 7 7 4.1387 2.3772 2.8516 8 6 5.5224 2.1475 3.2742 9 1 5.8280 1.1417 2.9858 10 6 6.4382 3.1717 2.5998 11 6 5.9847 4.5846 2.9800 12 7 5.9388 4.6885 4.4449 13 6 6.6099 5.6898 5.0947 14 1 7.5005 6.1155 4.6567 15 6 6.1454 6.1575 6.3163 16 7 4.9121 5.8966 6.6951 17 14 7.2706 7.1570 7.4228 18 1 8.5968 7.3092 6.7722 19 1 6.6749 8.4976 7.6532 20 1 7.4347 6.4583 8.7228 21 6 5.1596 3.6973 5.1993 22 6 5.6224 2.2947 4.7942 23 1 6.6563 2.1483 5.1067 24 8 4.7905 1.3180 5.4236 25 6 2.2511 2.0397 -1.2096 26 6 2.7085 3.3514 -1.2114 27 6 2.9422 3.9979 -2.4092 28 6 2.7113 3.3445 -3.6059 29 6 2.2508 2.0405 -3.6077 30 6 2.0196 1.3865 -2.4135 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8935 -0.5138 0.8900 36 1 2.0954 3.1411 1.1385 37 1 1.5817 1.6877 2.0284 38 1 3.5486 2.9201 3.3975 39 1 7.4644 3.0170 2.9330 40 1 6.3843 3.0511 1.5179 41 1 6.6910 5.3142 2.5839 42 1 4.9927 4.7730 2.5691 43 1 4.5875 6.2238 7.5486 44 1 5.3216 3.8414 6.2674 45 1 4.1004 3.8134 4.9693 46 1 4.8045 1.3533 6.3899 47 1 2.8852 3.8635 -0.2771 48 1 3.3018 5.0162 -2.4113 49 1 2.8912 3.8536 -4.5412 50 1 2.0718 1.5330 -4.5441 51 1 1.6596 0.3682 -2.4157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100122443.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:04 Heat of formation + Delta-G solvation = -41.566666 kcal Electronic energy + Delta-G solvation = -31805.290928 eV Core-core repulsion = 27704.641682 eV Total energy + Delta-G solvation = -4100.649246 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.39794 -40.40918 -39.21825 -37.20462 -36.85885 -35.60934 -33.75510 -32.79267 -31.69560 -31.45326 -30.68842 -30.21659 -27.71241 -26.91970 -24.36794 -24.05032 -23.51925 -23.09797 -22.27180 -21.09629 -20.26677 -18.93865 -18.65513 -18.30403 -18.07163 -17.15836 -16.85385 -16.54948 -16.34618 -16.01571 -15.83538 -15.53539 -15.36768 -15.28155 -14.97977 -14.87554 -14.48470 -14.38413 -14.03964 -13.93411 -13.87488 -13.53285 -13.33641 -13.26701 -12.97068 -12.86170 -12.74557 -12.69265 -12.66225 -12.20105 -12.14238 -11.98940 -11.96797 -11.83762 -11.59742 -11.31483 -11.23261 -10.94741 -10.59417 -10.53826 -9.98917 -9.76980 -8.70581 -8.21301 -7.90507 -5.36056 0.59150 0.75797 1.45939 1.50208 1.58932 1.68224 1.91928 2.45059 2.49946 3.06366 3.13499 3.26609 3.65982 3.80118 3.90930 3.92204 4.00589 4.13270 4.15175 4.23865 4.26334 4.29595 4.35418 4.41257 4.45484 4.48085 4.57315 4.66601 4.67105 4.70761 4.81524 4.90088 4.94024 4.96791 5.02629 5.07565 5.15792 5.20613 5.31299 5.35673 5.41690 5.56575 5.59193 5.65743 5.65891 5.79565 6.02084 6.26774 6.34878 6.57009 6.64279 6.82070 7.12396 7.29756 7.79667 8.31319 9.15104 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015034 B = 0.002792 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.940204 B =10026.888036 C =10976.280940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 N -0.609 5.609 4 C 0.108 3.892 5 C 0.490 3.510 6 O -0.574 6.574 7 N -0.703 5.703 8 C 0.172 3.828 9 H 0.068 0.932 10 C -0.130 4.130 11 C 0.150 3.850 12 N -0.602 5.602 13 C -0.265 4.265 14 H 0.065 0.935 15 C -0.041 4.041 16 N -0.926 5.926 17 Si 0.962 3.038 18 H -0.271 1.271 19 H -0.294 1.294 20 H -0.289 1.289 21 C 0.159 3.841 22 C 0.085 3.915 23 H 0.058 0.942 24 O -0.572 6.572 25 C 0.211 3.789 26 C -0.216 4.216 27 C -0.084 4.084 28 C -0.190 4.190 29 C -0.078 4.078 30 C -0.206 4.206 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.128 0.872 38 H 0.406 0.594 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.020 0.980 43 H 0.251 0.749 44 H 0.064 0.936 45 H 0.015 0.985 46 H 0.391 0.609 47 H 0.112 0.888 48 H 0.130 0.870 49 H 0.135 0.865 50 H 0.143 0.857 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.900 -10.124 -13.429 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.002 4.002 3 N -0.318 5.318 4 C -0.020 4.020 5 C 0.276 3.724 6 O -0.453 6.453 7 N -0.355 5.355 8 C 0.066 3.934 9 H 0.086 0.914 10 C -0.170 4.170 11 C 0.024 3.976 12 N -0.327 5.327 13 C -0.395 4.395 14 H 0.082 0.918 15 C -0.237 4.237 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.195 1.195 19 H -0.221 1.221 20 H -0.215 1.215 21 C 0.033 3.967 22 C 0.024 3.976 23 H 0.076 0.924 24 O -0.379 6.379 25 C 0.110 3.890 26 C -0.238 4.238 27 C -0.102 4.102 28 C -0.210 4.210 29 C -0.097 4.097 30 C -0.228 4.228 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.131 0.869 37 H 0.146 0.854 38 H 0.242 0.758 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.033 0.967 46 H 0.240 0.760 47 H 0.130 0.870 48 H 0.148 0.852 49 H 0.153 0.847 50 H 0.161 0.839 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.614 -10.829 -14.229 19.848 hybrid contribution 0.640 1.191 1.877 2.313 sum -7.974 -9.639 -12.352 17.580 Atomic orbital electron populations 1.22146 0.94552 1.02930 1.02300 1.21475 0.94817 0.81182 1.02764 1.46205 1.70335 1.13805 1.01491 1.21350 0.91987 1.00735 0.87899 1.21956 0.91469 0.78716 0.80302 1.90652 1.59390 1.40691 1.54588 1.45998 1.13104 1.52662 1.23759 1.20607 0.82389 0.98392 0.92006 0.91385 1.22224 0.99163 0.96023 0.99637 1.20932 0.97994 0.94460 0.84199 1.44163 1.58418 1.29415 1.00675 1.19481 1.04358 1.12650 1.02989 0.91762 1.25685 0.96583 1.00100 1.01381 1.70132 1.14900 1.50055 1.22110 0.85296 0.78946 0.77845 0.78853 1.19547 1.22084 1.21528 1.21189 0.92770 0.85432 0.97334 1.22576 0.93777 0.89439 0.91850 0.92416 1.86384 1.69592 1.56444 1.25487 1.18008 0.93199 0.91466 0.86365 1.20812 1.09198 0.94789 0.99021 1.21133 0.96989 0.99973 0.92124 1.21176 1.05524 0.96127 0.98191 1.21204 0.96068 0.94577 0.97821 1.20883 1.09683 1.01180 0.91042 0.92393 0.92654 0.90129 0.90618 0.91424 0.86865 0.85442 0.75783 0.91083 0.91601 0.92818 0.96160 0.93929 0.91740 0.96665 0.75953 0.87037 0.85244 0.84691 0.83937 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 10.24 71.98 0.74 -1.58 16 2 C 0.12 2.31 5.88 86.38 0.51 2.82 16 3 N -0.61 -14.36 2.10 -701.62 -1.47 -15.83 16 4 C 0.11 2.49 5.65 85.63 0.48 2.97 16 5 C 0.49 15.02 7.86 87.66 0.69 15.71 16 6 O -0.57 -21.80 16.09 -3.03 -0.05 -21.85 16 7 N -0.70 -22.03 4.15 -442.42 -1.84 -23.87 16 8 C 0.17 5.94 2.47 45.02 0.11 6.05 16 9 H 0.07 2.52 7.58 -2.39 -0.02 2.50 16 10 C -0.13 -4.59 5.77 30.67 0.18 -4.42 16 11 C 0.15 5.96 6.26 86.36 0.54 6.50 16 12 N -0.60 -27.87 2.99 -699.16 -2.09 -29.96 16 13 C -0.26 -13.71 9.58 84.03 0.81 -12.90 16 14 H 0.06 3.31 7.88 -2.92 -0.02 3.29 16 15 C -0.04 -2.16 4.92 84.86 0.42 -1.74 16 16 N -0.93 -50.48 11.20 21.65 0.24 -50.24 16 17 Si 0.96 42.58 29.59 68.60 2.03 44.61 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 21 C 0.16 6.79 4.63 86.35 0.40 7.19 16 22 C 0.08 3.00 3.36 30.66 0.10 3.11 16 23 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 24 O -0.57 -18.17 13.21 -148.98 -1.97 -20.13 16 25 C 0.21 5.42 6.55 38.21 0.25 5.68 16 26 C -0.22 -5.74 9.21 22.40 0.21 -5.54 16 27 C -0.08 -1.99 10.04 22.25 0.22 -1.77 16 28 C -0.19 -4.00 10.04 22.29 0.22 -3.78 16 29 C -0.08 -1.58 10.04 22.25 0.22 -1.36 16 30 C -0.21 -4.64 9.21 22.40 0.21 -4.43 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.44 6.20 -2.39 -0.01 1.42 16 35 H 0.07 1.37 8.07 -2.39 -0.02 1.35 16 36 H 0.11 2.42 6.19 -2.39 -0.01 2.41 16 37 H 0.13 2.29 8.07 -2.39 -0.02 2.27 16 38 H 0.41 12.44 6.87 -92.71 -0.64 11.80 16 39 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 42 H 0.02 0.81 7.74 -2.38 -0.02 0.79 16 43 H 0.25 13.32 8.31 -92.71 -0.77 12.55 16 44 H 0.06 3.13 6.06 -2.39 -0.01 3.11 16 45 H 0.02 0.68 6.64 -2.38 -0.02 0.66 16 46 H 0.39 9.79 9.08 -74.06 -0.67 9.12 16 47 H 0.11 2.99 6.14 -2.91 -0.02 2.97 16 48 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 49 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 50 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 51 H 0.13 2.52 6.14 -2.91 -0.02 2.50 16 Total: -1.00 -65.84 404.27 0.80 -65.04 By element: Atomic # 1 Polarization: 40.07 SS G_CDS: -0.36 Total: 39.71 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 6.30 Total: 12.52 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -5.16 Total: -119.90 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -2.02 Total: -41.98 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -65.84 0.80 -65.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100122443.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.475 kcal (2) G-P(sol) polarization free energy of solvation -65.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds