Wall clock time and date at job start Wed Apr 1 2020 05:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47082 * 2 1 4 4 C 1.46496 * 120.00149 * 269.99668 * 3 2 1 5 5 C 1.50696 * 109.47390 * 270.00211 * 4 3 2 6 6 H 1.08004 * 120.00043 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00190 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99855 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00190 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47143 * 89.99743 * 9 7 5 11 11 H 1.48493 * 109.46882 * 210.00032 * 9 7 5 12 12 H 1.48506 * 109.46861 * 329.99964 * 9 7 5 13 13 C 1.34782 * 119.99993 * 90.00169 * 3 2 1 14 14 O 1.21281 * 119.99870 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00122 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.46835 * 180.02562 * 15 13 3 17 17 C 1.46906 * 110.99801 * 170.00134 * 16 15 13 18 18 C 1.53235 * 109.34079 * 187.25100 * 17 16 15 19 19 N 1.47081 * 108.52054 * 306.16959 * 18 17 16 20 20 C 1.34776 * 120.88011 * 231.20569 * 19 18 17 21 21 O 1.21615 * 119.99753 * 179.97438 * 20 19 18 22 22 C 1.43197 * 120.00040 * 359.97438 * 20 19 18 23 23 C 9.75242 * 99.49448 * 75.97802 * 2 1 3 24 24 C 9.44016 * 111.94525 * 250.17688 * 13 1 2 25 25 C 1.52995 * 117.49958 * 94.11143 * 24 23 22 26 26 C 1.52995 * 117.50012 * 25.44905 * 24 23 22 27 27 C 1.47082 * 118.23500 * 51.18575 * 19 18 17 28 28 C 1.46896 * 110.99912 * 294.29778 * 16 15 13 29 29 H 1.08998 * 109.47267 * 300.00172 * 1 2 3 30 30 H 1.08998 * 109.47227 * 59.99851 * 1 2 3 31 31 H 1.08998 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47267 * 239.99828 * 2 1 3 33 33 H 1.09006 * 109.47038 * 119.99545 * 2 1 3 34 34 H 1.09010 * 109.47010 * 30.00218 * 4 3 2 35 35 H 1.09000 * 109.47548 * 149.99972 * 4 3 2 36 36 H 0.96997 * 119.99710 * 179.97438 * 8 7 5 37 37 H 1.08993 * 109.46926 * 59.99987 * 15 13 3 38 38 H 1.09004 * 109.47047 * 300.00203 * 15 13 3 39 39 H 1.08997 * 109.48796 * 307.21122 * 17 16 15 40 40 H 1.08997 * 109.49279 * 67.28994 * 17 16 15 41 41 H 1.09002 * 109.62473 * 65.87852 * 18 17 16 42 42 H 1.09000 * 109.62576 * 186.45954 * 18 17 16 43 43 H 1.09002 * 115.54220 * 239.78403 * 24 23 22 44 44 H 1.08993 * 117.49955 * 0.02562 * 25 24 23 45 45 H 1.09005 * 117.49694 * 145.01997 * 25 24 23 46 46 H 1.09001 * 117.49533 * 214.98006 * 26 24 23 47 47 H 1.08994 * 117.50235 * 359.97438 * 26 24 23 48 48 H 1.09001 * 109.62379 * 189.10499 * 27 19 18 49 49 H 1.08998 * 109.62760 * 68.52569 * 27 19 18 50 50 H 1.09001 * 109.49756 * 292.70738 * 28 16 15 51 51 H 1.08996 * 109.49111 * 52.79307 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1491 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 5.9760 0.8744 -4.2601 11 1 6.3923 3.2626 -4.2008 12 1 6.7735 1.9158 -2.2205 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9913 1.3064 2.4724 16 7 2.3091 2.2066 3.5888 17 6 1.8559 1.6408 4.8666 18 6 2.0401 2.6815 5.9762 19 7 3.4377 3.1397 5.9597 20 6 4.1778 3.1431 7.0860 21 8 5.3321 3.5249 7.0539 22 6 3.6052 2.6973 8.3204 23 6 3.1387 2.3306 9.3322 24 6 2.5505 1.8720 10.6013 25 6 1.4076 0.8578 10.5245 26 6 1.1182 2.3093 10.9149 27 6 4.0061 3.5935 4.6813 28 6 3.7445 2.5169 3.6227 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6750 3.5154 -4.4444 37 1 2.6211 0.4187 2.5303 38 1 0.9432 1.0126 2.5299 39 1 0.8024 1.3715 4.7918 40 1 2.4432 0.7527 5.0998 41 1 1.3754 3.5271 5.7991 42 1 1.8140 2.2305 6.9424 43 1 3.2448 1.7858 11.4371 44 1 1.0916 0.5297 9.5343 45 1 1.3498 0.1043 11.3101 46 1 0.8702 2.5102 11.9571 47 1 0.6116 2.9369 10.1817 48 1 5.0798 3.7454 4.7915 49 1 3.5304 4.5267 4.3798 50 1 4.3055 1.6165 3.8733 51 1 4.0606 2.8828 2.6459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112824876.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:02 Heat of formation + Delta-G solvation = 30.917820 kcal Electronic energy + Delta-G solvation = -30356.081558 eV Core-core repulsion = 26258.575475 eV Total energy + Delta-G solvation = -4097.506083 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.41897 -39.28072 -38.09605 -37.67706 -35.35246 -34.57687 -33.14035 -32.78584 -31.22328 -30.13406 -29.41368 -27.25481 -25.69759 -24.67386 -23.74289 -23.04607 -22.99368 -22.54427 -21.96460 -20.18272 -18.44128 -18.24264 -17.03691 -16.64154 -16.53529 -16.31168 -15.75359 -15.60996 -15.50502 -15.29512 -14.64496 -14.43963 -14.41508 -14.27338 -13.81637 -13.44926 -13.37432 -13.10022 -12.79540 -12.78474 -12.38561 -12.26742 -12.11075 -11.99057 -11.89013 -11.79260 -11.65918 -11.50850 -11.27224 -11.18620 -11.08421 -10.91212 -10.73316 -10.63121 -10.52905 -10.31325 -10.16587 -10.11577 -9.63589 -9.15683 -8.75941 -8.43984 -8.23824 -7.66055 -6.04814 -4.09573 1.21397 1.92861 2.69349 2.97036 3.29466 3.36233 3.38329 3.43207 3.49197 3.58420 3.63996 4.13085 4.20892 4.39123 4.40504 4.44520 4.65116 4.81100 4.85218 4.98752 5.03246 5.04846 5.16003 5.22931 5.25791 5.28370 5.30219 5.39680 5.41297 5.45168 5.49567 5.50580 5.59426 5.61445 5.66509 5.76539 5.94497 5.99128 6.03627 6.20436 6.31080 6.44902 6.79737 6.87856 6.99538 7.09354 7.14369 7.45276 7.54945 7.84443 7.91783 8.23094 8.42365 8.90046 9.10936 9.55697 11.03094 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015897 B = 0.002190 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.880233 B =12782.363612 C =14013.691614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.523 6.523 15 C 0.037 3.963 16 N -0.519 5.519 17 C 0.041 3.959 18 C 0.115 3.885 19 N -0.601 5.601 20 C 0.631 3.369 21 O -0.525 6.525 22 C -0.207 4.207 23 C -0.061 4.061 24 C -0.066 4.066 25 C -0.159 4.159 26 C -0.159 4.159 27 C 0.122 3.878 28 C 0.037 3.963 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.038 0.962 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.134 0.866 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.102 0.898 48 H 0.098 0.902 49 H 0.085 0.915 50 H 0.032 0.968 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.108 -7.743 25.680 28.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.400 6.400 15 C -0.094 4.094 16 N -0.244 5.244 17 C -0.088 4.088 18 C -0.008 4.008 19 N -0.334 5.334 20 C 0.419 3.581 21 O -0.403 6.403 22 C -0.210 4.210 23 C -0.063 4.063 24 C -0.084 4.084 25 C -0.196 4.196 26 C -0.195 4.195 27 C 0.000 4.000 28 C -0.091 4.091 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.056 0.944 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.152 0.848 44 H 0.120 0.880 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.120 0.880 48 H 0.117 0.883 49 H 0.104 0.896 50 H 0.050 0.950 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.525 -6.359 25.348 27.489 hybrid contribution 1.318 -1.096 -0.323 1.744 sum -7.208 -7.455 25.025 27.089 Atomic orbital electron populations 1.22221 0.96777 1.01343 1.02384 1.21406 0.93521 0.84341 1.02544 1.48268 1.63990 1.13156 1.07717 1.19252 0.96163 0.93674 0.78041 1.21416 0.96931 1.31880 1.06213 0.92595 1.24935 0.97798 0.94939 0.96439 1.69929 1.35647 1.33410 1.14291 0.86516 0.84746 0.77665 0.78606 1.20702 1.21079 1.19918 1.20077 0.78953 0.87087 0.84676 1.90639 1.44935 1.17653 1.86740 1.22077 1.02334 0.94200 0.90743 1.61573 1.17420 1.43865 1.01503 1.22487 1.01308 0.95498 0.89480 1.21858 0.81956 0.98284 0.98741 1.48079 1.13024 1.63847 1.08408 1.14742 0.84659 0.78072 0.80580 1.90860 1.16505 1.47669 1.85276 1.20559 1.00512 1.04369 0.95542 1.21268 0.97309 0.94085 0.93633 1.18908 0.91752 1.05879 0.91840 1.23122 0.99512 0.92842 1.04096 1.23123 0.95020 0.97902 1.03493 1.21844 1.00412 0.97812 0.79895 1.22713 0.87139 0.97477 1.01808 0.93081 0.91963 0.92244 0.89958 0.92024 0.95106 0.93832 0.92727 0.92492 0.88393 0.89251 0.94397 0.89859 0.89724 0.84802 0.88003 0.87331 0.87328 0.87971 0.88345 0.89641 0.94967 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 37.16 0.38 -1.74 16 2 C 0.11 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.60 -12.10 2.46 -175.06 -0.43 -12.53 16 4 C 0.25 6.32 5.16 -5.20 -0.03 6.30 16 5 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 6 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 9 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 13 C 0.51 9.99 7.33 -10.98 -0.08 9.91 16 14 O -0.52 -12.51 13.91 5.56 0.08 -12.43 16 15 C 0.04 0.53 4.00 -4.98 -0.02 0.51 16 16 N -0.52 -7.16 4.37 -235.77 -1.03 -8.19 16 17 C 0.04 0.41 5.62 -3.70 -0.02 0.39 16 18 C 0.11 1.12 6.49 -3.60 -0.02 1.09 16 19 N -0.60 -7.62 3.01 -175.34 -0.53 -8.15 16 20 C 0.63 8.99 7.56 -14.34 -0.11 8.88 16 21 O -0.53 -9.29 16.54 5.26 0.09 -9.21 16 22 C -0.21 -2.48 11.60 -38.85 -0.45 -2.93 16 23 C -0.06 -0.58 13.43 -37.13 -0.50 -1.08 16 24 C -0.07 -0.39 6.21 -93.41 -0.58 -0.97 16 25 C -0.16 -0.65 10.21 -26.70 -0.27 -0.92 16 26 C -0.16 -0.66 10.21 -26.70 -0.27 -0.93 16 27 C 0.12 1.70 6.60 -3.60 -0.02 1.67 16 28 C 0.04 0.55 5.26 -3.70 -0.02 0.53 16 29 H 0.05 0.60 7.22 -51.93 -0.37 0.22 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 33 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 34 H 0.03 0.80 8.07 -51.92 -0.42 0.38 16 35 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.06 0.74 7.38 -51.93 -0.38 0.36 16 38 H 0.10 1.14 7.01 -51.93 -0.36 0.78 16 39 H 0.09 0.70 7.99 -51.93 -0.41 0.29 16 40 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 0.67 6.40 -51.93 -0.33 0.34 16 43 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 47 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.10 1.42 7.06 -51.93 -0.37 1.06 16 49 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.12 2.15 5.77 -51.93 -0.30 1.85 16 LS Contribution 419.64 15.07 6.32 6.32 Total: -1.00 -35.18 419.64 -10.54 -45.72 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -8.29 Total: -1.64 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -2.46 Total: 8.96 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -1.25 Total: -54.51 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.16 Total: -21.64 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -35.18 -10.54 -45.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112824876.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.636 kcal (2) G-P(sol) polarization free energy of solvation -35.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds