Wall clock time and date at job start Wed Apr 1 2020 05:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47082 * 2 1 4 4 C 1.46496 * 120.00149 * 269.99668 * 3 2 1 5 5 C 1.50696 * 109.47390 * 270.00211 * 4 3 2 6 6 H 1.08004 * 120.00043 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00190 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99855 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00190 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47143 * 89.99743 * 9 7 5 11 11 H 1.48493 * 109.46882 * 210.00032 * 9 7 5 12 12 H 1.48506 * 109.46861 * 329.99964 * 9 7 5 13 13 C 1.34782 * 119.99993 * 90.00169 * 3 2 1 14 14 O 1.21281 * 119.99870 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00122 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.46835 * 180.02562 * 15 13 3 17 17 C 1.46906 * 110.99801 * 170.00134 * 16 15 13 18 18 C 1.53235 * 109.34079 * 187.25100 * 17 16 15 19 19 N 1.47081 * 108.52054 * 306.16959 * 18 17 16 20 20 C 1.34776 * 120.88011 * 231.20569 * 19 18 17 21 21 O 1.21615 * 119.99753 * 179.97438 * 20 19 18 22 22 C 1.43197 * 120.00040 * 359.97438 * 20 19 18 23 23 C 9.75242 * 99.49448 * 75.97802 * 2 1 3 24 24 C 9.44016 * 111.94525 * 250.17688 * 13 1 2 25 25 C 1.52995 * 117.49958 * 94.11143 * 24 23 22 26 26 C 1.52995 * 117.50012 * 25.44905 * 24 23 22 27 27 C 1.47082 * 118.23500 * 51.18575 * 19 18 17 28 28 C 1.46896 * 110.99912 * 294.29778 * 16 15 13 29 29 H 1.08998 * 109.47267 * 300.00172 * 1 2 3 30 30 H 1.08998 * 109.47227 * 59.99851 * 1 2 3 31 31 H 1.08998 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47267 * 239.99828 * 2 1 3 33 33 H 1.09006 * 109.47038 * 119.99545 * 2 1 3 34 34 H 1.09010 * 109.47010 * 30.00218 * 4 3 2 35 35 H 1.09000 * 109.47548 * 149.99972 * 4 3 2 36 36 H 0.96997 * 119.99710 * 179.97438 * 8 7 5 37 37 H 1.08993 * 109.46926 * 59.99987 * 15 13 3 38 38 H 1.09004 * 109.47047 * 300.00203 * 15 13 3 39 39 H 1.08997 * 109.48796 * 307.21122 * 17 16 15 40 40 H 1.08997 * 109.49279 * 67.28994 * 17 16 15 41 41 H 1.09002 * 109.62473 * 65.87852 * 18 17 16 42 42 H 1.09000 * 109.62576 * 186.45954 * 18 17 16 43 43 H 1.09002 * 115.54220 * 239.78403 * 24 23 22 44 44 H 1.08993 * 117.49955 * 0.02562 * 25 24 23 45 45 H 1.09005 * 117.49694 * 145.01997 * 25 24 23 46 46 H 1.09001 * 117.49533 * 214.98006 * 26 24 23 47 47 H 1.08994 * 117.50235 * 359.97438 * 26 24 23 48 48 H 1.09001 * 109.62379 * 189.10499 * 27 19 18 49 49 H 1.08998 * 109.62760 * 68.52569 * 27 19 18 50 50 H 1.09001 * 109.49756 * 292.70738 * 28 16 15 51 51 H 1.08996 * 109.49111 * 52.79307 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1491 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 5.9760 0.8744 -4.2601 11 1 6.3923 3.2626 -4.2008 12 1 6.7735 1.9158 -2.2205 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9913 1.3064 2.4724 16 7 2.3091 2.2066 3.5888 17 6 1.8559 1.6408 4.8666 18 6 2.0401 2.6815 5.9762 19 7 3.4377 3.1397 5.9597 20 6 4.1778 3.1431 7.0860 21 8 5.3321 3.5249 7.0539 22 6 3.6052 2.6973 8.3204 23 6 3.1387 2.3306 9.3322 24 6 2.5505 1.8720 10.6013 25 6 1.4076 0.8578 10.5245 26 6 1.1182 2.3093 10.9149 27 6 4.0061 3.5935 4.6813 28 6 3.7445 2.5169 3.6227 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6750 3.5154 -4.4444 37 1 2.6211 0.4187 2.5303 38 1 0.9432 1.0126 2.5299 39 1 0.8024 1.3715 4.7918 40 1 2.4432 0.7527 5.0998 41 1 1.3754 3.5271 5.7991 42 1 1.8140 2.2305 6.9424 43 1 3.2448 1.7858 11.4371 44 1 1.0916 0.5297 9.5343 45 1 1.3498 0.1043 11.3101 46 1 0.8702 2.5102 11.9571 47 1 0.6116 2.9369 10.1817 48 1 5.0798 3.7454 4.7915 49 1 3.5304 4.5267 4.3798 50 1 4.3055 1.6165 3.8733 51 1 4.0606 2.8828 2.6459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112824876.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:01 Heat of formation + Delta-G solvation = 7.775541 kcal Electronic energy + Delta-G solvation = -30357.085082 eV Core-core repulsion = 26258.575475 eV Total energy + Delta-G solvation = -4098.509607 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.51600 -40.70218 -38.88822 -38.48590 -36.90228 -35.74512 -34.87852 -33.93366 -32.19670 -31.62972 -30.62056 -28.91389 -26.92859 -25.71365 -24.68848 -24.56318 -23.85090 -23.25607 -22.98507 -21.15198 -19.88406 -19.24222 -18.61254 -17.89639 -17.82444 -17.35526 -17.23655 -16.73719 -16.51802 -16.32911 -15.91820 -15.71236 -15.58729 -15.38803 -15.14688 -14.65085 -14.63078 -14.33149 -14.01448 -13.71042 -13.51785 -13.34653 -13.20455 -13.11603 -13.04297 -12.88701 -12.67264 -12.55672 -12.52201 -12.41828 -12.37588 -12.30252 -12.18562 -12.11354 -11.81112 -11.69838 -11.51820 -11.04977 -10.75974 -10.64066 -10.54764 -9.97553 -9.38526 -9.31846 -8.22086 -6.36481 0.33229 1.10965 1.34539 1.37738 1.47535 1.75462 1.90138 2.18135 2.23687 2.39906 2.81132 2.91925 3.07129 3.10031 3.66452 3.70268 3.82869 3.87259 3.97180 4.01885 4.06431 4.12179 4.14217 4.28316 4.36716 4.37701 4.41101 4.49267 4.52787 4.64044 4.69115 4.74691 4.79537 4.81697 4.95320 4.96751 4.99846 5.03292 5.08781 5.11863 5.23604 5.25045 5.25625 5.42934 5.59684 5.74285 5.89745 6.00349 6.08152 6.09049 6.14099 6.72093 6.79340 6.87022 7.29944 7.57193 8.84440 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015897 B = 0.002190 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.880233 B =12782.363612 C =14013.691614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.964 3.036 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.275 1.275 13 C 0.495 3.505 14 O -0.577 6.577 15 C 0.053 3.947 16 N -0.535 5.535 17 C 0.044 3.956 18 C 0.113 3.887 19 N -0.597 5.597 20 C 0.630 3.370 21 O -0.576 6.576 22 C -0.262 4.262 23 C -0.017 4.017 24 C -0.094 4.094 25 C -0.146 4.146 26 C -0.149 4.149 27 C 0.128 3.872 28 C 0.048 3.952 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.020 0.980 35 H -0.004 1.004 36 H 0.266 0.734 37 H 0.078 0.922 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.151 0.849 44 H 0.102 0.898 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.078 0.922 50 H 0.035 0.965 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.916 -10.799 28.669 32.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.789 3.211 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.200 1.200 13 C 0.283 3.717 14 O -0.457 6.457 15 C -0.077 4.077 16 N -0.260 5.260 17 C -0.083 4.083 18 C -0.009 4.009 19 N -0.329 5.329 20 C 0.420 3.580 21 O -0.457 6.457 22 C -0.265 4.265 23 C -0.019 4.019 24 C -0.111 4.111 25 C -0.182 4.182 26 C -0.186 4.186 27 C 0.006 3.994 28 C -0.081 4.081 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.038 0.962 35 H 0.014 0.986 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.154 0.846 39 H 0.143 0.857 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.126 0.874 43 H 0.168 0.832 44 H 0.120 0.880 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.117 0.883 48 H 0.103 0.897 49 H 0.096 0.904 50 H 0.053 0.947 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.397 -9.478 28.353 31.652 hybrid contribution 1.778 -0.151 -1.158 2.127 sum -8.619 -9.630 27.195 30.110 Atomic orbital electron populations 1.22148 0.94390 1.03463 1.01814 1.21738 0.95447 0.81370 1.03727 1.48289 1.64260 1.15060 1.06173 1.18640 0.94997 0.91517 0.80522 1.21694 0.97961 1.31745 1.06323 0.93058 1.25836 1.02168 0.94617 0.96586 1.70049 1.37642 1.34271 1.14758 0.85464 0.79290 0.78169 0.78170 1.18806 1.20756 1.19966 1.21185 0.77476 0.86746 0.86277 1.90619 1.47093 1.20331 1.87676 1.22004 1.04852 0.93597 0.87228 1.61508 1.16223 1.44983 1.03269 1.22631 1.03281 0.95348 0.87075 1.22097 0.80015 0.98699 1.00064 1.48125 1.14147 1.63194 1.07387 1.15026 0.84126 0.77256 0.81553 1.90817 1.18656 1.50130 1.86143 1.20179 1.02894 1.07327 0.96109 1.22027 0.95236 0.91376 0.93278 1.19306 0.93092 1.08241 0.90505 1.23272 0.96967 0.93137 1.04866 1.23259 0.92664 0.98006 1.04649 1.21602 0.99713 0.97408 0.80720 1.22423 0.88477 0.97472 0.99739 0.91694 0.94525 0.88673 0.91335 0.88269 0.96204 0.98608 0.92489 0.90431 0.84634 0.85745 0.93601 0.89399 0.87354 0.83173 0.87996 0.85277 0.85340 0.88318 0.89746 0.90422 0.94703 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 10.24 71.98 0.74 -2.86 16 2 C 0.10 2.84 5.93 86.38 0.51 3.35 16 3 N -0.61 -24.84 2.46 -826.15 -2.03 -26.87 16 4 C 0.26 14.24 5.16 85.63 0.44 14.68 16 5 C -0.54 -31.12 9.39 25.60 0.24 -30.88 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 9 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 10 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 13 C 0.49 19.73 7.33 87.66 0.64 20.38 16 14 O -0.58 -29.15 13.91 -3.03 -0.04 -29.19 16 15 C 0.05 1.38 4.00 85.56 0.34 1.72 16 16 N -0.53 -13.98 4.37 -899.85 -3.93 -17.91 16 17 C 0.04 0.74 5.62 86.38 0.49 1.22 16 18 C 0.11 1.97 6.49 86.35 0.56 2.53 16 19 N -0.60 -15.24 3.01 -826.89 -2.49 -17.73 16 20 C 0.63 18.48 7.56 85.49 0.65 19.12 16 21 O -0.58 -21.64 16.54 -4.08 -0.07 -21.71 16 22 C -0.26 -6.14 11.60 30.03 0.35 -5.79 16 23 C -0.02 -0.29 13.43 31.14 0.42 0.13 16 24 C -0.09 -0.81 6.21 -12.60 -0.08 -0.89 16 25 C -0.15 -0.59 10.21 30.62 0.31 -0.28 16 26 C -0.15 -0.68 10.21 30.62 0.31 -0.37 16 27 C 0.13 3.79 6.60 86.35 0.57 4.36 16 28 C 0.05 1.47 5.26 86.38 0.45 1.92 16 29 H 0.06 1.28 7.22 -2.39 -0.02 1.27 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 33 H 0.10 2.10 6.44 -2.38 -0.02 2.08 16 34 H 0.02 1.09 8.07 -2.38 -0.02 1.07 16 35 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.08 1.73 7.38 -2.39 -0.02 1.72 16 38 H 0.14 2.50 7.01 -2.39 -0.02 2.49 16 39 H 0.12 1.28 7.99 -2.39 -0.02 1.26 16 40 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 42 H 0.11 1.40 6.40 -2.39 -0.02 1.39 16 43 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.13 0.04 8.14 -2.38 -0.02 0.02 16 46 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 47 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16 48 H 0.08 2.70 7.06 -2.39 -0.02 2.68 16 49 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 50 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.08 3.06 5.77 -2.39 -0.01 3.05 16 Total: -1.00 -84.34 419.64 2.08 -82.25 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.93 Total: 10.65 kcal Atomic # 6 Polarization: 21.80 SS G_CDS: 7.41 Total: 29.21 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -8.17 Total: -118.82 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -0.11 Total: -50.90 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -84.34 2.08 -82.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112824876.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.030 kcal (2) G-P(sol) polarization free energy of solvation -84.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds