Wall clock time and date at job start Wed Apr 1 2020 05:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46994 * 2 1 4 4 C 1.46501 * 119.99982 * 270.00165 * 3 2 1 5 5 C 1.50698 * 109.47103 * 270.00254 * 4 3 2 6 6 H 1.08000 * 120.00336 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99988 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99936 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 119.99951 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47191 * 89.99962 * 9 7 5 11 11 H 1.48504 * 109.47269 * 209.99815 * 9 7 5 12 12 H 1.48501 * 109.47482 * 329.99962 * 9 7 5 13 13 C 1.34774 * 119.99700 * 90.00320 * 3 2 1 14 14 O 1.21279 * 119.99558 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00330 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47140 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99859 * 180.02562 * 16 15 13 18 18 C 1.53007 * 109.47115 * 180.02562 * 17 16 15 19 19 N 1.46499 * 109.46858 * 179.97438 * 18 17 16 20 20 C 1.34776 * 119.99497 * 179.97438 * 19 18 17 21 21 O 1.21558 * 120.00375 * 0.02562 * 20 19 18 22 22 C 1.47846 * 120.00039 * 180.02562 * 20 19 18 23 23 C 1.39596 * 120.14303 * 0.20859 * 22 20 19 24 24 C 1.37935 * 119.85560 * 180.25487 * 23 22 20 25 25 C 1.38387 * 120.14051 * 359.51427 * 24 23 22 26 26 C 1.38336 * 120.29582 * 0.27962 * 25 24 23 27 27 C 1.50691 * 119.92818 * 179.97438 * 26 25 24 28 28 C 1.37977 * 120.14092 * 359.95557 * 26 25 24 29 29 H 1.09007 * 109.46759 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47100 * 299.99764 * 1 2 3 31 31 H 1.08993 * 109.47593 * 59.99978 * 1 2 3 32 32 H 1.09004 * 109.47100 * 240.00235 * 2 1 3 33 33 H 1.08996 * 109.47340 * 120.00472 * 2 1 3 34 34 H 1.09003 * 109.47188 * 30.00239 * 4 3 2 35 35 H 1.09001 * 109.47165 * 149.99638 * 4 3 2 36 36 H 0.96997 * 120.00200 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.46580 * 59.99913 * 15 13 3 38 38 H 1.08997 * 109.47115 * 300.00597 * 15 13 3 39 39 H 1.00901 * 111.00387 * 303.95723 * 16 15 13 40 40 H 1.08995 * 109.47389 * 59.99921 * 17 16 15 41 41 H 1.09008 * 109.46943 * 299.99702 * 17 16 15 42 42 H 1.08996 * 109.47003 * 59.99167 * 18 17 16 43 43 H 1.09000 * 109.46744 * 299.99738 * 18 17 16 44 44 H 0.96996 * 120.00628 * 359.97438 * 19 18 17 45 45 H 1.08004 * 120.07609 * 0.04651 * 23 22 20 46 46 H 1.08002 * 119.93294 * 179.79870 * 24 23 22 47 47 H 1.08006 * 119.84850 * 180.25881 * 25 24 23 48 48 H 1.09003 * 109.47337 * 90.00241 * 27 26 25 49 49 H 1.09001 * 109.47499 * 209.99775 * 27 26 25 50 50 H 1.08997 * 109.47573 * 329.99831 * 27 26 25 51 51 H 1.08004 * 120.07573 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1493 2.3906 -2.8776 8 7 3.3492 3.1267 -3.6176 9 14 5.9136 2.0976 -3.4165 10 1 5.9774 0.8769 -4.2598 11 1 6.3926 3.2653 -4.1990 12 1 6.7736 1.9177 -2.2193 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3103 2.2060 3.5889 17 6 2.0770 1.5457 4.8801 18 6 2.4188 2.5120 6.0162 19 7 2.1855 1.8536 7.3040 20 6 2.4210 2.5179 8.4528 21 8 2.8265 3.6634 8.4204 22 6 2.1862 1.8534 9.7524 23 6 1.7248 0.5365 9.7932 24 6 1.5027 -0.0759 11.0090 25 6 1.7459 0.6089 12.1867 26 6 2.2073 1.9126 12.1534 27 6 2.4688 2.6507 13.4409 28 6 2.4289 2.5384 10.9438 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5816 1.6878 -2.0284 35 1 2.0954 3.1411 -1.1384 36 1 3.6752 3.5172 -4.4435 37 1 2.6212 0.4186 2.5301 38 1 0.9433 1.0124 2.5299 39 1 3.2588 2.5435 3.5218 40 1 2.7074 0.6596 4.9543 41 1 1.0294 1.2537 4.9549 42 1 1.7881 3.3978 5.9418 43 1 3.4662 2.8044 5.9416 44 1 1.8617 0.9397 7.3299 45 1 1.5388 -0.0005 8.8748 46 1 1.1426 -1.0936 11.0420 47 1 1.5743 0.1233 13.1361 48 1 3.5007 2.4858 13.7511 49 1 2.3012 3.7170 13.2890 50 1 1.7939 2.2833 14.2139 51 1 2.7888 3.5564 10.9191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122991625.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:41 Heat of formation + Delta-G solvation = -75.188439 kcal Electronic energy + Delta-G solvation = -28790.852310 eV Core-core repulsion = 24688.745114 eV Total energy + Delta-G solvation = -4102.107195 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.30656 -40.71307 -39.51429 -37.61221 -36.85516 -35.52631 -34.86822 -33.79984 -32.21102 -31.63074 -30.70050 -29.11717 -27.80912 -26.79981 -24.95551 -24.45914 -23.71046 -23.11485 -22.75070 -21.23334 -19.97593 -18.76495 -18.59430 -17.86027 -17.51998 -17.37138 -17.12404 -16.86906 -16.43979 -16.32659 -15.87092 -15.63827 -15.47388 -14.94585 -14.80615 -14.67606 -14.62256 -14.48141 -14.44703 -14.12330 -13.91343 -13.51753 -13.46213 -13.21985 -13.07593 -13.06276 -12.89494 -12.68889 -12.65354 -12.54594 -12.47978 -12.41515 -12.14178 -12.00325 -11.84498 -11.71173 -11.15740 -10.64294 -10.56880 -10.32004 -9.90500 -9.67580 -9.45154 -9.39285 -8.22179 -6.37381 -0.16069 0.38362 1.35533 1.39050 1.48950 1.79504 1.88335 1.89238 2.30918 2.45095 2.85596 3.07138 3.29239 3.65453 3.72785 3.80372 3.89029 3.96482 4.08090 4.13673 4.17351 4.34968 4.37049 4.39205 4.39985 4.46337 4.51680 4.67887 4.70301 4.81173 4.86569 4.88590 4.90934 4.96028 4.98229 5.02186 5.07546 5.22465 5.24024 5.27084 5.33034 5.42601 5.42925 5.58203 5.58722 5.82355 5.92829 5.95523 6.07248 6.21960 6.43871 6.71298 6.85284 7.11007 7.29223 7.54202 8.84732 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.001508 C = 0.001452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.737133 B =18567.906386 C =19274.146355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.490 3.510 14 O -0.590 6.590 15 C 0.062 3.938 16 N -0.693 5.693 17 C 0.061 3.939 18 C 0.124 3.876 19 N -0.706 5.706 20 C 0.552 3.448 21 O -0.586 6.586 22 C -0.151 4.151 23 C -0.090 4.090 24 C -0.121 4.121 25 C -0.095 4.095 26 C -0.102 4.102 27 C -0.116 4.116 28 C -0.085 4.085 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.020 0.980 35 H -0.007 1.007 36 H 0.266 0.734 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.345 0.655 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.418 0.582 45 H 0.153 0.847 46 H 0.162 0.838 47 H 0.154 0.846 48 H 0.078 0.922 49 H 0.064 0.936 50 H 0.086 0.914 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.277 -16.054 32.979 37.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.198 1.198 13 C 0.279 3.721 14 O -0.470 6.470 15 C -0.070 4.070 16 N -0.326 5.326 17 C -0.067 4.067 18 C 0.000 4.000 19 N -0.359 5.359 20 C 0.341 3.659 21 O -0.468 6.468 22 C -0.154 4.154 23 C -0.108 4.108 24 C -0.139 4.139 25 C -0.113 4.113 26 C -0.102 4.102 27 C -0.172 4.172 28 C -0.105 4.105 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.038 0.962 35 H 0.011 0.989 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.144 0.856 39 H 0.164 0.836 40 H 0.081 0.919 41 H 0.119 0.881 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.256 0.744 45 H 0.171 0.829 46 H 0.179 0.821 47 H 0.172 0.828 48 H 0.097 0.903 49 H 0.083 0.917 50 H 0.105 0.895 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.426 -14.272 32.720 36.462 hybrid contribution 1.577 -0.070 -1.101 1.924 sum -5.849 -14.342 31.619 35.209 Atomic orbital electron populations 1.22163 0.94642 1.03508 1.01649 1.21768 0.95263 0.81212 1.04038 1.48283 1.64080 1.15173 1.06102 1.18657 0.95202 0.91410 0.80605 1.21734 0.97931 1.31978 1.06528 0.92730 1.25880 1.02418 0.94457 0.96497 1.70059 1.37829 1.34201 1.14777 0.85401 0.78936 0.78171 0.78187 1.18674 1.20827 1.19782 1.21358 0.77390 0.86680 0.86675 1.90654 1.47742 1.20645 1.87944 1.21812 1.04711 0.93933 0.86536 1.59937 1.32676 1.38830 1.01182 1.22060 1.03526 0.94871 0.86291 1.21123 1.00958 0.96245 0.81707 1.45586 1.67443 1.18212 1.04633 1.18752 0.76688 0.85389 0.85097 1.90774 1.47903 1.19783 1.88292 1.19878 1.06931 0.96547 0.92028 1.21596 0.96526 0.92341 1.00357 1.21525 0.99403 1.01570 0.91372 1.21684 0.96123 0.93277 1.00176 1.20182 0.99333 0.95602 0.95111 1.20863 1.03144 0.99831 0.93401 1.21224 0.97629 0.99909 0.91691 0.88482 0.91956 0.94672 0.91149 0.87746 0.96169 0.98930 0.92465 0.89626 0.85615 0.83628 0.91947 0.88094 0.92319 0.92704 0.74371 0.82928 0.82089 0.82836 0.90303 0.91746 0.89505 0.86678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 10.24 71.98 0.74 -2.98 16 2 C 0.10 2.83 5.93 86.38 0.51 3.34 16 3 N -0.60 -25.12 2.46 -826.15 -2.03 -27.15 16 4 C 0.26 14.36 5.16 85.63 0.44 14.80 16 5 C -0.54 -31.56 9.39 25.60 0.24 -31.32 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.37 5.46 84.66 0.46 0.83 16 8 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 9 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 10 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 C 0.49 20.03 7.71 87.66 0.68 20.70 16 14 O -0.59 -31.10 15.78 -3.03 -0.05 -31.15 16 15 C 0.06 1.56 4.72 85.56 0.40 1.97 16 16 N -0.69 -17.91 6.13 -517.93 -3.17 -21.08 16 17 C 0.06 0.98 5.80 86.31 0.50 1.48 16 18 C 0.12 2.53 5.93 86.38 0.51 3.04 16 19 N -0.71 -11.59 5.51 -465.96 -2.57 -14.16 16 20 C 0.55 12.75 7.77 86.79 0.67 13.43 16 21 O -0.59 -19.34 16.35 -3.90 -0.06 -19.41 16 22 C -0.15 -2.68 5.87 -20.09 -0.12 -2.80 16 23 C -0.09 -0.90 9.54 22.53 0.21 -0.69 16 24 C -0.12 -0.87 10.03 22.23 0.22 -0.65 16 25 C -0.09 -0.79 9.69 22.33 0.22 -0.58 16 26 C -0.10 -1.29 5.87 -19.91 -0.12 -1.41 16 27 C -0.12 -0.97 10.01 71.23 0.71 -0.26 16 28 C -0.09 -1.57 9.24 22.53 0.21 -1.37 16 29 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.06 1.30 7.22 -2.38 -0.02 1.29 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 2.17 8.07 -2.38 -0.02 2.15 16 33 H 0.10 2.10 6.44 -2.39 -0.02 2.09 16 34 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 35 H -0.01 -0.48 7.42 -2.39 -0.02 -0.49 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.09 1.68 7.40 -2.39 -0.02 1.66 16 38 H 0.13 2.46 7.18 -2.39 -0.02 2.45 16 39 H 0.35 10.14 8.43 -89.69 -0.76 9.38 16 40 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.42 3.45 6.51 -92.71 -0.60 2.85 16 45 H 0.15 0.56 6.41 -2.91 -0.02 0.54 16 46 H 0.16 0.15 8.06 -2.91 -0.02 0.13 16 47 H 0.15 0.42 8.06 -2.91 -0.02 0.40 16 48 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 49 H 0.06 0.60 8.08 -2.39 -0.02 0.58 16 50 H 0.09 0.40 8.08 -2.39 -0.02 0.38 16 51 H 0.12 2.48 7.65 -2.91 -0.02 2.45 16 Total: -1.00 -87.92 424.94 0.52 -87.41 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -0.42 Total: 17.40 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 6.50 Total: 17.55 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -7.48 Total: -119.14 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.11 Total: -50.56 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -87.92 0.52 -87.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122991625.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.220 kcal (2) G-P(sol) polarization free energy of solvation -87.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds