Wall clock time and date at job start Wed Apr 1 2020 05:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46494 * 109.46950 * 2 1 4 4 C 1.46501 * 120.00178 * 269.99935 * 3 2 1 5 5 C 1.50706 * 109.46995 * 270.00444 * 4 3 2 6 6 H 1.07990 * 120.00187 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99697 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99787 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46838 * 60.00448 * 9 7 5 11 11 H 1.48503 * 109.46886 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46969 * 300.00053 * 9 7 5 13 13 C 1.34776 * 120.00207 * 90.00541 * 3 2 1 14 14 O 1.21279 * 120.00538 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99661 * 359.97438 * 13 3 2 16 16 N 1.46905 * 109.47062 * 180.02562 * 15 13 3 17 17 C 1.46892 * 111.00024 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47412 * 180.02562 * 17 16 15 19 19 N 1.46500 * 109.47538 * 179.97438 * 18 17 16 20 20 C 1.34773 * 119.99913 * 179.97438 * 19 18 17 21 21 O 1.21281 * 120.00637 * 359.97438 * 20 19 18 22 22 C 1.50698 * 119.99781 * 180.02562 * 20 19 18 23 23 C 1.50707 * 109.47247 * 180.02562 * 22 20 19 24 24 C 1.38238 * 119.99792 * 89.99994 * 23 22 20 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00220 * 359.97124 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38234 * 120.00179 * 269.97930 * 23 22 20 29 29 H 1.09003 * 109.46867 * 300.00024 * 1 2 3 30 30 H 1.08997 * 109.46781 * 59.99937 * 1 2 3 31 31 H 1.08990 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46432 * 240.00134 * 2 1 3 33 33 H 1.08997 * 109.46781 * 120.00063 * 2 1 3 34 34 H 1.09003 * 109.46857 * 29.99994 * 4 3 2 35 35 H 1.08993 * 109.47240 * 150.00541 * 4 3 2 36 36 H 0.97001 * 119.99873 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.47173 * 60.00116 * 15 13 3 38 38 H 1.09000 * 109.47155 * 300.00033 * 15 13 3 39 39 H 1.00898 * 110.99524 * 303.95431 * 16 15 13 40 40 H 1.08997 * 109.47854 * 59.99682 * 17 16 15 41 41 H 1.09004 * 109.46966 * 299.99719 * 17 16 15 42 42 H 1.09000 * 109.47395 * 59.99063 * 18 17 16 43 43 H 1.09004 * 109.46800 * 299.99789 * 18 17 16 44 44 H 0.96998 * 119.99656 * 0.02562 * 19 18 17 45 45 H 1.09005 * 109.47656 * 60.00320 * 22 20 19 46 46 H 1.09000 * 109.47265 * 299.99628 * 22 20 19 47 47 H 1.08005 * 120.00068 * 359.97438 * 24 23 22 48 48 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 49 49 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 51 51 H 1.07999 * 119.99968 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0959 7 6 4.1492 2.3896 -2.8780 8 7 3.3491 3.1258 -3.6181 9 14 5.9136 2.0966 -3.4169 10 1 6.1417 0.6400 -3.5938 11 1 6.1610 2.7966 -4.7030 12 1 6.8407 2.6209 -2.3822 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1598 1.1672 15 6 1.9915 1.3062 2.4723 16 7 2.3093 2.2064 3.5889 17 6 2.0761 1.5461 4.8802 18 6 2.4166 2.5127 6.0162 19 7 2.1834 1.8544 7.3040 20 6 2.4179 2.5190 8.4528 21 8 2.8225 3.6619 8.4205 22 6 2.1786 1.8416 9.7775 23 6 2.5140 2.7938 10.8965 24 6 1.5387 3.6287 11.4092 25 6 1.8462 4.5016 12.4360 26 6 3.1287 4.5394 12.9503 27 6 4.1053 3.7084 12.4340 28 6 3.7967 2.8321 11.4104 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0957 3.1410 -1.1384 36 1 3.6752 3.5163 -4.4440 37 1 2.6214 0.4185 2.5301 38 1 0.9434 1.0124 2.5299 39 1 3.2576 2.5445 3.5221 40 1 2.7071 0.6605 4.9547 41 1 1.0287 1.2533 4.9545 42 1 1.7853 3.3981 5.9415 43 1 3.4639 2.8059 5.9420 44 1 1.8609 0.9399 7.3298 45 1 2.8098 0.9561 9.8521 46 1 1.1313 1.5488 9.8518 47 1 0.5365 3.5988 11.0076 48 1 1.0844 5.1542 12.8363 49 1 3.3688 5.2212 13.7528 50 1 5.1084 3.7410 12.8329 51 1 4.5584 2.1794 11.0103 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130355656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:52 Heat of formation + Delta-G solvation = -47.892837 kcal Electronic energy + Delta-G solvation = -28701.035302 eV Core-core repulsion = 24600.111732 eV Total energy + Delta-G solvation = -4100.923569 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.34102 -39.19983 -38.96860 -36.58055 -35.27375 -34.36048 -33.24539 -32.78305 -31.18992 -30.19254 -29.93250 -28.10828 -27.06538 -25.14795 -23.03765 -22.89706 -22.68789 -22.11414 -21.91979 -20.57007 -18.47266 -17.46919 -17.14293 -16.55135 -16.46021 -16.32034 -16.22979 -15.85687 -15.55495 -15.25461 -15.05120 -14.46319 -14.27265 -14.08899 -13.75222 -13.70558 -13.47299 -13.32612 -13.30124 -13.24523 -12.74981 -12.51235 -12.42896 -12.14400 -11.99073 -11.78039 -11.60721 -11.45746 -11.45354 -11.31926 -11.17444 -10.92808 -10.74837 -10.52821 -10.21077 -10.13236 -9.65228 -9.35297 -9.19715 -9.03864 -8.95190 -8.43654 -8.42984 -7.65823 -6.04001 -4.09027 1.01292 1.12453 2.37333 2.77881 3.31088 3.36133 3.37258 3.44417 3.51568 3.79043 4.23909 4.35608 4.45859 4.46343 4.54409 4.69548 4.75754 4.80121 4.85517 4.89409 5.01857 5.07251 5.19794 5.20391 5.23675 5.30386 5.32336 5.42125 5.47238 5.63122 5.65433 5.69435 5.72837 5.76453 5.80043 5.99577 6.09912 6.14708 6.21393 6.21530 6.25496 6.46209 6.69305 6.75183 7.10211 7.17573 7.29276 7.46478 7.55538 7.92349 7.94935 8.23831 8.43169 8.90309 9.11220 9.56060 11.03930 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018343 B = 0.001471 C = 0.001406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.066728 B =19034.032529 C =19910.947789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.670 5.670 17 C 0.051 3.949 18 C 0.119 3.881 19 N -0.731 5.731 20 C 0.512 3.488 21 O -0.526 6.526 22 C -0.102 4.102 23 C -0.067 4.067 24 C -0.105 4.105 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.120 4.120 28 C -0.105 4.105 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.355 0.645 40 H 0.034 0.966 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.400 0.600 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 -9.195 30.306 32.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.567 4.567 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.303 5.303 17 C -0.079 4.079 18 C -0.004 4.004 19 N -0.385 5.385 20 C 0.298 3.702 21 O -0.401 6.401 22 C -0.142 4.142 23 C -0.068 4.068 24 C -0.123 4.123 25 C -0.138 4.138 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.124 4.124 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.175 0.825 40 H 0.053 0.947 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.233 0.767 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.066 -7.303 30.045 31.509 hybrid contribution 1.523 -1.332 -0.495 2.083 sum -4.543 -8.635 29.550 31.119 Atomic orbital electron populations 1.22228 0.96796 1.01335 1.02424 1.21405 0.93520 0.84311 1.02535 1.48251 1.64022 1.13183 1.07704 1.19251 0.96150 0.93693 0.78062 1.21396 0.96975 1.32051 1.06270 0.92620 1.24934 0.97807 0.94915 0.96400 1.69923 1.35708 1.33290 1.14343 0.86566 0.84849 0.78175 0.77853 1.20310 1.21156 1.20211 1.20139 0.79032 0.87102 0.84857 1.90689 1.45029 1.17694 1.86888 1.21902 1.02365 0.94218 0.90445 1.59976 1.33131 1.37552 0.99648 1.22067 1.01636 0.95048 0.89146 1.21266 1.02226 0.96219 0.80736 1.45912 1.69068 1.17590 1.05881 1.20522 0.77659 0.86800 0.85252 1.90770 1.44217 1.17651 1.87467 1.20681 1.04505 0.98512 0.90509 1.19260 0.94158 0.97420 0.95938 1.20989 0.99090 0.95674 0.96580 1.21116 0.96844 0.98768 0.97027 1.21161 0.93452 0.99142 1.00158 1.21115 0.99317 0.96274 0.97051 1.20985 0.95599 0.99144 0.96630 0.93042 0.91974 0.92238 0.89961 0.91978 0.95056 0.93863 0.92660 0.92823 0.88672 0.82489 0.94740 0.90381 0.90161 0.91306 0.76664 0.87881 0.87843 0.86220 0.86050 0.86158 0.86063 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.11 1.63 5.93 -4.04 -0.02 1.61 16 3 N -0.60 -12.36 2.46 -175.06 -0.43 -12.79 16 4 C 0.25 6.44 5.16 -5.19 -0.03 6.42 16 5 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 C 0.50 10.24 7.71 -10.98 -0.08 10.16 16 14 O -0.53 -13.28 15.78 5.56 0.09 -13.19 16 15 C 0.04 0.61 4.72 -4.97 -0.02 0.58 16 16 N -0.67 -9.09 6.13 -115.06 -0.70 -9.79 16 17 C 0.05 0.47 5.80 -3.83 -0.02 0.45 16 18 C 0.12 1.19 5.93 -4.04 -0.02 1.17 16 19 N -0.73 -5.55 5.56 -60.30 -0.33 -5.89 16 20 C 0.51 4.93 7.82 -10.99 -0.09 4.85 16 21 O -0.53 -7.71 16.03 5.56 0.09 -7.62 16 22 C -0.10 -0.63 5.83 -29.03 -0.17 -0.79 16 23 C -0.07 -0.57 4.37 -104.62 -0.46 -1.03 16 24 C -0.11 -0.89 9.70 -39.58 -0.38 -1.28 16 25 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 26 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 27 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 28 C -0.11 -0.90 9.70 -39.58 -0.38 -1.28 16 29 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.32 8.07 -51.93 -0.42 0.91 16 33 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.05 0.66 7.40 -51.93 -0.38 0.27 16 38 H 0.10 1.15 7.18 -51.93 -0.37 0.78 16 39 H 0.36 5.21 8.43 -39.29 -0.33 4.88 16 40 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.40 1.67 8.47 -40.82 -0.35 1.32 16 45 H 0.10 0.39 8.09 -51.93 -0.42 -0.03 16 46 H 0.10 0.39 8.08 -51.93 -0.42 -0.03 16 47 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 48 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 49 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 50 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 51 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 428.16 15.07 6.45 6.45 Total: -1.00 -37.32 428.16 -10.45 -47.77 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -8.40 Total: 2.67 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -2.92 Total: 1.42 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.73 Total: -54.34 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: 0.18 Total: -20.81 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -37.32 -10.45 -47.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130355656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.125 kcal (2) G-P(sol) polarization free energy of solvation -37.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds