Wall clock time and date at job start Wed Apr 1 2020 05:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46494 * 109.46950 * 2 1 4 4 C 1.46501 * 120.00178 * 269.99935 * 3 2 1 5 5 C 1.50706 * 109.46995 * 270.00444 * 4 3 2 6 6 H 1.07990 * 120.00187 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99697 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99787 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46838 * 60.00448 * 9 7 5 11 11 H 1.48503 * 109.46886 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46969 * 300.00053 * 9 7 5 13 13 C 1.34776 * 120.00207 * 90.00541 * 3 2 1 14 14 O 1.21279 * 120.00538 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99661 * 359.97438 * 13 3 2 16 16 N 1.46905 * 109.47062 * 180.02562 * 15 13 3 17 17 C 1.46892 * 111.00024 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47412 * 180.02562 * 17 16 15 19 19 N 1.46500 * 109.47538 * 179.97438 * 18 17 16 20 20 C 1.34773 * 119.99913 * 179.97438 * 19 18 17 21 21 O 1.21281 * 120.00637 * 359.97438 * 20 19 18 22 22 C 1.50698 * 119.99781 * 180.02562 * 20 19 18 23 23 C 1.50707 * 109.47247 * 180.02562 * 22 20 19 24 24 C 1.38238 * 119.99792 * 89.99994 * 23 22 20 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00220 * 359.97124 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38234 * 120.00179 * 269.97930 * 23 22 20 29 29 H 1.09003 * 109.46867 * 300.00024 * 1 2 3 30 30 H 1.08997 * 109.46781 * 59.99937 * 1 2 3 31 31 H 1.08990 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46432 * 240.00134 * 2 1 3 33 33 H 1.08997 * 109.46781 * 120.00063 * 2 1 3 34 34 H 1.09003 * 109.46857 * 29.99994 * 4 3 2 35 35 H 1.08993 * 109.47240 * 150.00541 * 4 3 2 36 36 H 0.97001 * 119.99873 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.47173 * 60.00116 * 15 13 3 38 38 H 1.09000 * 109.47155 * 300.00033 * 15 13 3 39 39 H 1.00898 * 110.99524 * 303.95431 * 16 15 13 40 40 H 1.08997 * 109.47854 * 59.99682 * 17 16 15 41 41 H 1.09004 * 109.46966 * 299.99719 * 17 16 15 42 42 H 1.09000 * 109.47395 * 59.99063 * 18 17 16 43 43 H 1.09004 * 109.46800 * 299.99789 * 18 17 16 44 44 H 0.96998 * 119.99656 * 0.02562 * 19 18 17 45 45 H 1.09005 * 109.47656 * 60.00320 * 22 20 19 46 46 H 1.09000 * 109.47265 * 299.99628 * 22 20 19 47 47 H 1.08005 * 120.00068 * 359.97438 * 24 23 22 48 48 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 49 49 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 51 51 H 1.07999 * 119.99968 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0959 7 6 4.1492 2.3896 -2.8780 8 7 3.3491 3.1258 -3.6181 9 14 5.9136 2.0966 -3.4169 10 1 6.1417 0.6400 -3.5938 11 1 6.1610 2.7966 -4.7030 12 1 6.8407 2.6209 -2.3822 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1598 1.1672 15 6 1.9915 1.3062 2.4723 16 7 2.3093 2.2064 3.5889 17 6 2.0761 1.5461 4.8802 18 6 2.4166 2.5127 6.0162 19 7 2.1834 1.8544 7.3040 20 6 2.4179 2.5190 8.4528 21 8 2.8225 3.6619 8.4205 22 6 2.1786 1.8416 9.7775 23 6 2.5140 2.7938 10.8965 24 6 1.5387 3.6287 11.4092 25 6 1.8462 4.5016 12.4360 26 6 3.1287 4.5394 12.9503 27 6 4.1053 3.7084 12.4340 28 6 3.7967 2.8321 11.4104 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0957 3.1410 -1.1384 36 1 3.6752 3.5163 -4.4440 37 1 2.6214 0.4185 2.5301 38 1 0.9434 1.0124 2.5299 39 1 3.2576 2.5445 3.5221 40 1 2.7071 0.6605 4.9547 41 1 1.0287 1.2533 4.9545 42 1 1.7853 3.3981 5.9415 43 1 3.4639 2.8059 5.9420 44 1 1.8609 0.9399 7.3298 45 1 2.8098 0.9561 9.8521 46 1 1.1313 1.5488 9.8518 47 1 0.5365 3.5988 11.0076 48 1 1.0844 5.1542 12.8363 49 1 3.3688 5.2212 13.7528 50 1 5.1084 3.7410 12.8329 51 1 4.5584 2.1794 11.0103 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130355656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:51 Heat of formation + Delta-G solvation = -75.112322 kcal Electronic energy + Delta-G solvation = -28702.215627 eV Core-core repulsion = 24600.111732 eV Total energy + Delta-G solvation = -4102.103895 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.04275 -40.70516 -39.63849 -37.57661 -36.84329 -35.33489 -34.84347 -33.81687 -31.75004 -31.65598 -30.91884 -29.34615 -28.24746 -26.46235 -24.63705 -23.86141 -23.46506 -23.20663 -22.59710 -21.25344 -19.96023 -18.62646 -18.26581 -17.79603 -17.68128 -17.42464 -17.18627 -16.86562 -16.64643 -16.29869 -15.93517 -15.86677 -15.32305 -15.02196 -14.92393 -14.62573 -14.55560 -14.38842 -14.25336 -14.12068 -13.88998 -13.51924 -13.44371 -13.35302 -13.22053 -13.07758 -12.92191 -12.63584 -12.63024 -12.46906 -12.38573 -12.13028 -11.98781 -11.85122 -11.84357 -11.72759 -11.03349 -10.64235 -10.56742 -10.12249 -9.78438 -9.61601 -9.44341 -9.38986 -8.21933 -6.37268 0.43099 0.53684 1.35794 1.40501 1.47581 1.66143 1.88311 2.03131 2.32867 2.46602 2.93726 3.07300 3.36709 3.70391 3.73098 3.86645 3.97171 4.09400 4.12419 4.15259 4.18388 4.29218 4.36053 4.40091 4.42335 4.47953 4.53623 4.61921 4.66701 4.69645 4.79981 4.90242 4.93256 4.97390 5.02104 5.07594 5.15217 5.17776 5.23345 5.39543 5.42670 5.57707 5.58612 5.64394 5.67678 5.83409 5.93773 6.07262 6.14703 6.23059 6.58434 6.71156 6.85330 7.29229 7.30093 7.54226 8.84723 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018343 B = 0.001471 C = 0.001406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.066728 B =19034.032529 C =19910.947789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.258 1.258 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.490 3.510 14 O -0.590 6.590 15 C 0.062 3.938 16 N -0.695 5.695 17 C 0.062 3.938 18 C 0.125 3.875 19 N -0.713 5.713 20 C 0.509 3.491 21 O -0.585 6.585 22 C -0.093 4.093 23 C -0.083 4.083 24 C -0.123 4.123 25 C -0.133 4.133 26 C -0.133 4.133 27 C -0.133 4.133 28 C -0.123 4.123 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.020 0.980 35 H -0.008 1.008 36 H 0.267 0.733 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.344 0.656 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.421 0.579 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.130 0.870 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.143 -12.747 32.029 35.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.279 3.721 14 O -0.470 6.470 15 C -0.070 4.070 16 N -0.328 5.328 17 C -0.067 4.067 18 C 0.000 4.000 19 N -0.367 5.367 20 C 0.297 3.703 21 O -0.464 6.464 22 C -0.132 4.132 23 C -0.083 4.083 24 C -0.141 4.141 25 C -0.151 4.151 26 C -0.151 4.151 27 C -0.151 4.151 28 C -0.141 4.141 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.038 0.962 35 H 0.010 0.990 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.143 0.857 39 H 0.163 0.837 40 H 0.079 0.921 41 H 0.118 0.882 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.258 0.742 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.148 0.852 48 H 0.154 0.846 49 H 0.155 0.845 50 H 0.154 0.846 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.295 -10.970 31.790 34.214 hybrid contribution 1.530 -0.199 -1.001 1.840 sum -4.764 -11.169 30.789 33.097 Atomic orbital electron populations 1.22163 0.94641 1.03508 1.01647 1.21766 0.95267 0.81211 1.04028 1.48284 1.64080 1.15169 1.06108 1.18654 0.95199 0.91394 0.80609 1.21708 0.97944 1.32095 1.06520 0.92695 1.25884 1.02418 0.94477 0.96479 1.70056 1.37846 1.34145 1.14788 0.85465 0.78955 0.79069 0.77289 1.18265 1.20467 1.20428 1.21373 0.77381 0.86673 0.86689 1.90654 1.47734 1.20688 1.87949 1.21809 1.04673 0.93924 0.86558 1.59954 1.32647 1.38825 1.01326 1.22064 1.03428 0.94925 0.86306 1.21027 1.00478 0.96064 0.82390 1.45715 1.68126 1.18327 1.04540 1.21191 0.76336 0.86146 0.86655 1.90752 1.47013 1.20358 1.88299 1.20735 1.06904 0.98347 0.87244 1.19590 0.94187 0.97974 0.96566 1.21284 0.99858 0.95997 0.96973 1.21428 0.97491 0.99037 0.97141 1.21464 0.93483 0.99471 1.00707 1.21426 1.00230 0.96292 0.97176 1.21277 0.96139 0.99693 0.97020 0.91941 0.94686 0.88484 0.91170 0.87742 0.96177 0.98954 0.92466 0.89660 0.85664 0.83729 0.92054 0.88193 0.92860 0.93258 0.74164 0.84990 0.84955 0.85175 0.84558 0.84453 0.84593 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 10.24 71.99 0.74 -2.96 16 2 C 0.10 2.82 5.93 86.38 0.51 3.33 16 3 N -0.60 -25.05 2.46 -826.15 -2.03 -27.08 16 4 C 0.26 14.34 5.16 85.63 0.44 14.79 16 5 C -0.54 -31.55 9.39 25.60 0.24 -31.31 16 6 H 0.05 3.11 7.81 -2.92 -0.02 3.09 16 7 C 0.01 0.37 5.46 84.65 0.46 0.83 16 8 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 9 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 10 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.49 19.95 7.71 87.66 0.68 20.63 16 14 O -0.59 -31.07 15.78 -3.02 -0.05 -31.12 16 15 C 0.06 1.56 4.72 85.56 0.40 1.96 16 16 N -0.69 -17.74 6.13 -517.94 -3.17 -20.91 16 17 C 0.06 0.94 5.80 86.30 0.50 1.44 16 18 C 0.13 2.38 5.93 86.38 0.51 2.89 16 19 N -0.71 -9.20 5.56 -463.07 -2.57 -11.77 16 20 C 0.51 9.14 7.82 87.66 0.69 9.83 16 21 O -0.58 -17.44 16.03 -3.03 -0.05 -17.49 16 22 C -0.09 -0.91 5.83 29.10 0.17 -0.74 16 23 C -0.08 -1.32 4.37 -19.86 -0.09 -1.41 16 24 C -0.12 -2.01 9.70 22.27 0.22 -1.80 16 25 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 26 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 27 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 28 C -0.12 -2.02 9.70 22.27 0.22 -1.80 16 29 H 0.06 1.30 7.22 -2.39 -0.02 1.28 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 33 H 0.10 2.09 6.44 -2.39 -0.02 2.08 16 34 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 35 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 36 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.09 1.65 7.40 -2.39 -0.02 1.64 16 38 H 0.13 2.43 7.18 -2.39 -0.02 2.41 16 39 H 0.34 10.06 8.43 -89.70 -0.76 9.30 16 40 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.42 1.85 8.47 -92.71 -0.79 1.06 16 45 H 0.13 0.53 8.09 -2.38 -0.02 0.51 16 46 H 0.13 0.53 8.08 -2.39 -0.02 0.51 16 47 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 48 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 49 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 50 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 51 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -88.94 428.16 0.19 -88.75 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -0.61 Total: 18.95 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 6.36 Total: 10.15 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -7.49 Total: -116.42 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -0.10 Total: -48.61 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -88.94 0.19 -88.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130355656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.637 kcal (2) G-P(sol) polarization free energy of solvation -88.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds