Wall clock time and date at job start Wed Apr 1 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46900 * 109.47173 * 2 1 4 4 C 1.46906 * 110.99888 * 290.68879 * 3 2 1 5 5 C 1.50700 * 109.47093 * 85.85391 * 4 3 2 6 6 O 1.21285 * 120.00173 * 7.56858 * 5 4 3 7 7 N 1.34783 * 119.99495 * 187.56026 * 5 4 3 8 8 C 1.37089 * 119.99311 * 179.97438 * 7 5 4 9 9 H 1.08003 * 120.00752 * 0.02562 * 8 7 5 10 10 C 1.38954 * 119.99715 * 179.97438 * 8 7 5 11 11 N 1.31412 * 119.99890 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99983 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47412 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46822 * 120.00535 * 12 10 8 15 15 H 1.48500 * 109.47398 * 240.00243 * 12 10 8 16 16 C 1.46896 * 110.99727 * 166.73318 * 3 2 1 17 17 H 1.09004 * 109.47060 * 171.18913 * 16 3 2 18 18 C 1.52998 * 109.47142 * 51.19585 * 16 3 2 19 19 C 1.52998 * 109.47212 * 291.18948 * 16 3 2 20 20 N 1.46498 * 109.47208 * 304.99574 * 19 16 3 21 21 C 1.34775 * 119.99779 * 179.97438 * 20 19 16 22 22 O 1.21274 * 120.00554 * 0.02562 * 21 20 19 23 23 C 1.50700 * 119.99760 * 180.02562 * 21 20 19 24 24 C 1.50705 * 109.47214 * 180.02562 * 23 21 20 25 25 C 1.38236 * 119.99895 * 269.72627 * 24 23 21 26 26 C 1.38237 * 119.99972 * 179.76236 * 25 24 23 27 27 C 1.38237 * 119.99510 * 0.51124 * 26 25 24 28 28 C 1.38231 * 120.00523 * 359.74459 * 27 26 25 29 29 C 1.38232 * 119.99920 * 89.99630 * 24 23 21 30 30 H 1.09000 * 109.46902 * 68.48350 * 1 2 3 31 31 H 1.09003 * 109.47340 * 188.48289 * 1 2 3 32 32 H 1.08997 * 109.46858 * 308.48788 * 1 2 3 33 33 H 1.08999 * 109.46601 * 120.00123 * 2 1 3 34 34 H 1.09001 * 109.46877 * 240.00136 * 2 1 3 35 35 H 1.08997 * 109.46482 * 205.85951 * 4 3 2 36 36 H 1.09003 * 109.46760 * 325.85191 * 4 3 2 37 37 H 0.96994 * 120.00148 * 0.02562 * 7 5 4 38 38 H 0.97003 * 120.00178 * 179.97438 * 11 10 8 39 39 H 1.09005 * 109.47136 * 179.97438 * 18 16 3 40 40 H 1.09002 * 109.46788 * 299.99116 * 18 16 3 41 41 H 1.08996 * 109.47824 * 59.99844 * 18 16 3 42 42 H 1.09003 * 109.46820 * 64.99727 * 19 16 3 43 43 H 1.08998 * 109.47147 * 184.99273 * 19 16 3 44 44 H 0.97001 * 120.00197 * 0.02562 * 20 19 16 45 45 H 1.09003 * 109.47311 * 299.99878 * 23 21 20 46 46 H 1.08998 * 109.47375 * 59.99865 * 23 21 20 47 47 H 1.08004 * 119.99795 * 359.97438 * 25 24 23 48 48 H 1.07997 * 119.99566 * 180.22925 * 26 25 24 49 49 H 1.07997 * 119.99179 * 179.72357 * 27 26 25 50 50 H 1.07997 * 119.99980 * 179.97438 * 28 27 26 51 51 H 1.07996 * 120.00171 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7384 2.0428 -1.2830 5 6 0.3481 2.6236 -1.2556 6 8 -0.2889 2.6234 -0.2235 7 7 -0.1873 3.1434 -2.3780 8 6 -1.4523 3.6712 -2.3530 9 1 -2.0197 3.6710 -1.4340 10 6 -2.0042 4.2076 -3.5100 11 7 -1.3137 4.2084 -4.6281 12 14 -3.7280 4.9262 -3.4763 13 1 -4.2886 4.8041 -2.1066 14 1 -3.6746 6.3590 -3.8630 15 1 -4.5912 4.1873 -4.4325 16 6 3.4537 1.4363 0.3147 17 1 3.8245 2.4489 0.1558 18 6 4.2106 0.4674 -0.5958 19 6 3.6697 1.0375 1.7759 20 7 2.8510 1.8903 2.6411 21 6 2.8795 1.7193 3.9776 22 8 3.5832 0.8597 4.4642 23 6 2.0369 2.5962 4.8676 24 6 2.2498 2.2034 6.3069 25 6 1.4426 1.2433 6.8880 26 6 1.6410 0.8795 8.2067 27 6 2.6398 1.4834 8.9475 28 6 3.4435 2.4473 8.3680 29 6 3.2485 2.8072 7.0476 30 1 -0.3633 0.3769 -0.9561 31 1 -0.3634 -1.0164 0.1516 32 1 -0.3633 0.6396 0.8044 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 2.4624 2.8406 -1.4486 36 1 1.8115 1.3129 -2.0893 37 1 0.3220 3.1433 -3.2034 38 1 -1.6990 4.5825 -5.4359 39 1 5.2748 0.5058 -0.3626 40 1 3.8399 -0.5453 -0.4369 41 1 4.0568 0.7515 -1.6368 42 1 3.3811 -0.0045 1.9146 43 1 4.7214 1.1606 2.0345 44 1 2.2879 2.5776 2.2520 45 1 2.3253 3.6382 4.7293 46 1 0.9853 2.4729 4.6087 47 1 0.6591 0.7750 6.3106 48 1 1.0128 0.1268 8.6596 49 1 2.7919 1.2023 9.9791 50 1 4.2235 2.9193 8.9469 51 1 3.8760 3.5607 6.5950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154059221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:04 Heat of formation + Delta-G solvation = -44.586979 kcal Electronic energy + Delta-G solvation = -30544.610969 eV Core-core repulsion = 26443.830752 eV Total energy + Delta-G solvation = -4100.780216 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.10479 -39.29430 -38.55580 -37.31055 -34.42233 -33.78715 -32.97537 -31.72123 -31.25019 -30.97736 -29.83077 -28.13921 -26.60011 -25.70688 -24.20742 -22.67468 -22.63182 -21.78706 -20.17804 -19.76439 -18.97128 -17.85547 -17.13903 -16.80898 -16.38661 -16.09020 -15.74921 -15.52195 -15.22112 -14.91122 -14.79715 -14.46555 -14.22661 -13.81261 -13.62689 -13.50169 -13.23307 -13.07752 -12.99881 -12.79795 -12.53134 -12.43285 -12.32449 -12.00231 -11.94333 -11.81059 -11.52720 -11.31983 -11.22728 -11.11835 -11.08970 -10.85685 -10.72571 -10.40897 -10.34867 -10.21034 -9.85049 -9.44460 -8.99202 -8.90924 -8.79911 -8.46365 -7.93375 -7.91068 -6.41327 -3.81642 1.24569 1.33344 2.74433 3.15468 3.25751 3.26456 3.32645 3.76120 3.88334 3.94678 4.22716 4.56953 4.68819 4.72990 4.87779 4.89710 5.00062 5.08309 5.13001 5.18324 5.19214 5.24005 5.30578 5.39305 5.45938 5.47483 5.53857 5.55340 5.60470 5.70625 5.75807 5.84197 5.85392 5.91301 5.94891 5.96841 6.07128 6.24233 6.29563 6.35157 6.41071 6.51195 6.54810 6.56037 6.91040 6.97590 7.21033 7.34715 7.55379 7.68931 8.07501 8.35439 8.63844 9.19920 9.56812 10.09219 10.76656 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.002302 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.556319 B =12158.298371 C =13613.350430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.057 3.943 3 N -0.507 5.507 4 C 0.044 3.956 5 C 0.447 3.553 6 O -0.568 6.568 7 N -0.570 5.570 8 C -0.294 4.294 9 H 0.103 0.897 10 C 0.020 3.980 11 N -0.904 5.904 12 Si 0.927 3.073 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.283 1.283 16 C 0.065 3.935 17 H 0.089 0.911 18 C -0.183 4.183 19 C 0.134 3.866 20 N -0.713 5.713 21 C 0.514 3.486 22 O -0.546 6.546 23 C -0.106 4.106 24 C -0.059 4.059 25 C -0.105 4.105 26 C -0.120 4.120 27 C -0.125 4.125 28 C -0.121 4.121 29 C -0.107 4.107 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.390 0.610 38 H 0.270 0.730 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.414 0.586 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.187 -4.995 15.650 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 N -0.231 5.231 4 C -0.087 4.087 5 C 0.232 3.768 6 O -0.451 6.451 7 N -0.208 5.208 8 C -0.424 4.424 9 H 0.121 0.879 10 C -0.181 4.181 11 N -0.545 5.545 12 Si 0.754 3.246 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.209 1.209 16 C -0.044 4.044 17 H 0.107 0.893 18 C -0.243 4.243 19 C 0.009 3.991 20 N -0.365 5.365 21 C 0.300 3.700 22 O -0.424 6.424 23 C -0.146 4.146 24 C -0.060 4.060 25 C -0.123 4.123 26 C -0.138 4.138 27 C -0.143 4.143 28 C -0.139 4.139 29 C -0.125 4.125 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.223 0.777 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.251 0.749 45 H 0.120 0.880 46 H 0.125 0.875 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.939 -5.283 16.871 20.789 hybrid contribution -0.331 0.236 -1.676 1.725 sum 10.608 -5.046 15.195 19.206 Atomic orbital electron populations 1.21846 0.93796 0.99824 1.04330 1.22139 0.97130 0.88088 0.99642 1.61747 1.12592 1.16925 1.31802 1.21950 0.97980 0.98625 0.90184 1.19712 0.87884 0.84262 0.84898 1.90497 1.62668 1.60695 1.31269 1.41893 1.15758 1.53222 1.09909 1.19702 0.91052 1.34347 0.97265 0.87936 1.25238 0.99947 0.98010 0.94915 1.69617 1.38028 1.46502 1.00391 0.85839 0.81877 0.78394 0.78462 1.19273 1.20849 1.20872 1.22078 0.88496 1.00102 0.93737 0.89331 1.22427 1.00955 1.00513 1.00382 1.21324 0.94741 0.94893 0.88131 1.45862 1.46737 1.38347 1.05562 1.20444 0.82502 0.84419 0.82600 1.90696 1.41893 1.34880 1.74940 1.20695 1.01998 1.00573 0.91308 1.19321 0.95998 0.96716 0.93946 1.21030 0.99415 0.96692 0.95176 1.21097 0.98365 0.99920 0.94432 1.21109 0.96191 0.97208 0.99783 1.21075 0.99562 0.98092 0.95204 1.20979 0.97185 1.00029 0.94290 0.92489 0.94284 0.90166 0.91435 0.95262 0.89897 0.92986 0.77716 0.92039 0.91944 0.91894 0.91872 0.91700 0.91478 0.74916 0.87964 0.87520 0.86135 0.86193 0.86366 0.86260 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.42 37.16 0.31 -2.04 16 2 C 0.06 0.81 4.36 -3.82 -0.02 0.79 16 3 N -0.51 -7.16 3.40 -228.08 -0.78 -7.93 16 4 C 0.04 0.70 4.70 -4.97 -0.02 0.68 16 5 C 0.45 9.62 6.11 -10.98 -0.07 9.56 16 6 O -0.57 -13.74 13.25 5.55 0.07 -13.66 16 7 N -0.57 -13.67 5.29 -10.96 -0.06 -13.73 16 8 C -0.29 -7.86 9.68 -14.94 -0.14 -8.01 16 9 H 0.10 2.88 7.16 -52.48 -0.38 2.51 16 10 C 0.02 0.52 5.50 -17.47 -0.10 0.43 16 11 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 12 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 13 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 C 0.07 0.72 2.41 -67.72 -0.16 0.56 16 17 H 0.09 0.95 7.71 -51.93 -0.40 0.55 16 18 C -0.18 -1.76 8.46 37.16 0.31 -1.45 16 19 C 0.13 1.55 4.95 -4.04 -0.02 1.53 16 20 N -0.71 -8.69 5.39 -60.30 -0.32 -9.02 16 21 C 0.51 6.78 7.82 -10.99 -0.09 6.69 16 22 O -0.55 -9.07 16.03 5.56 0.09 -8.99 16 23 C -0.11 -1.13 5.83 -29.03 -0.17 -1.30 16 24 C -0.06 -0.69 4.37 -104.62 -0.46 -1.15 16 25 C -0.11 -1.20 9.70 -39.58 -0.38 -1.58 16 26 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 27 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 28 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 29 C -0.11 -1.16 9.70 -39.58 -0.38 -1.55 16 30 H 0.06 1.11 6.33 -51.93 -0.33 0.78 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.53 6.98 -51.93 -0.36 1.17 16 33 H 0.07 0.89 6.24 -51.93 -0.32 0.57 16 34 H 0.03 0.39 6.74 -51.93 -0.35 0.04 16 35 H 0.08 1.19 7.52 -51.93 -0.39 0.80 16 36 H 0.05 0.79 7.57 -51.93 -0.39 0.40 16 37 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 38 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.62 6.61 -51.93 -0.34 0.27 16 41 H 0.06 0.62 7.56 -51.93 -0.39 0.23 16 42 H 0.06 0.82 6.62 -51.93 -0.34 0.47 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.41 5.10 8.14 -40.82 -0.33 4.77 16 45 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 46 H 0.11 1.05 8.08 -51.93 -0.42 0.63 16 47 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 48 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 49 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 50 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 51 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 411.70 15.07 6.20 6.20 Total: -1.00 -31.64 411.70 -9.68 -41.33 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -8.02 Total: 15.22 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.58 Total: -1.67 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.43 Total: -54.07 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: 0.16 Total: -22.65 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.64 -9.68 -41.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154059221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.260 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds