Wall clock time and date at job start Wed Apr 1 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46900 * 109.47173 * 2 1 4 4 C 1.46906 * 110.99888 * 290.68879 * 3 2 1 5 5 C 1.50700 * 109.47093 * 85.85391 * 4 3 2 6 6 O 1.21285 * 120.00173 * 7.56858 * 5 4 3 7 7 N 1.34783 * 119.99495 * 187.56026 * 5 4 3 8 8 C 1.37089 * 119.99311 * 179.97438 * 7 5 4 9 9 H 1.08003 * 120.00752 * 0.02562 * 8 7 5 10 10 C 1.38954 * 119.99715 * 179.97438 * 8 7 5 11 11 N 1.31412 * 119.99890 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99983 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47412 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46822 * 120.00535 * 12 10 8 15 15 H 1.48500 * 109.47398 * 240.00243 * 12 10 8 16 16 C 1.46896 * 110.99727 * 166.73318 * 3 2 1 17 17 H 1.09004 * 109.47060 * 171.18913 * 16 3 2 18 18 C 1.52998 * 109.47142 * 51.19585 * 16 3 2 19 19 C 1.52998 * 109.47212 * 291.18948 * 16 3 2 20 20 N 1.46498 * 109.47208 * 304.99574 * 19 16 3 21 21 C 1.34775 * 119.99779 * 179.97438 * 20 19 16 22 22 O 1.21274 * 120.00554 * 0.02562 * 21 20 19 23 23 C 1.50700 * 119.99760 * 180.02562 * 21 20 19 24 24 C 1.50705 * 109.47214 * 180.02562 * 23 21 20 25 25 C 1.38236 * 119.99895 * 269.72627 * 24 23 21 26 26 C 1.38237 * 119.99972 * 179.76236 * 25 24 23 27 27 C 1.38237 * 119.99510 * 0.51124 * 26 25 24 28 28 C 1.38231 * 120.00523 * 359.74459 * 27 26 25 29 29 C 1.38232 * 119.99920 * 89.99630 * 24 23 21 30 30 H 1.09000 * 109.46902 * 68.48350 * 1 2 3 31 31 H 1.09003 * 109.47340 * 188.48289 * 1 2 3 32 32 H 1.08997 * 109.46858 * 308.48788 * 1 2 3 33 33 H 1.08999 * 109.46601 * 120.00123 * 2 1 3 34 34 H 1.09001 * 109.46877 * 240.00136 * 2 1 3 35 35 H 1.08997 * 109.46482 * 205.85951 * 4 3 2 36 36 H 1.09003 * 109.46760 * 325.85191 * 4 3 2 37 37 H 0.96994 * 120.00148 * 0.02562 * 7 5 4 38 38 H 0.97003 * 120.00178 * 179.97438 * 11 10 8 39 39 H 1.09005 * 109.47136 * 179.97438 * 18 16 3 40 40 H 1.09002 * 109.46788 * 299.99116 * 18 16 3 41 41 H 1.08996 * 109.47824 * 59.99844 * 18 16 3 42 42 H 1.09003 * 109.46820 * 64.99727 * 19 16 3 43 43 H 1.08998 * 109.47147 * 184.99273 * 19 16 3 44 44 H 0.97001 * 120.00197 * 0.02562 * 20 19 16 45 45 H 1.09003 * 109.47311 * 299.99878 * 23 21 20 46 46 H 1.08998 * 109.47375 * 59.99865 * 23 21 20 47 47 H 1.08004 * 119.99795 * 359.97438 * 25 24 23 48 48 H 1.07997 * 119.99566 * 180.22925 * 26 25 24 49 49 H 1.07997 * 119.99179 * 179.72357 * 27 26 25 50 50 H 1.07997 * 119.99980 * 179.97438 * 28 27 26 51 51 H 1.07996 * 120.00171 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7384 2.0428 -1.2830 5 6 0.3481 2.6236 -1.2556 6 8 -0.2889 2.6234 -0.2235 7 7 -0.1873 3.1434 -2.3780 8 6 -1.4523 3.6712 -2.3530 9 1 -2.0197 3.6710 -1.4340 10 6 -2.0042 4.2076 -3.5100 11 7 -1.3137 4.2084 -4.6281 12 14 -3.7280 4.9262 -3.4763 13 1 -4.2886 4.8041 -2.1066 14 1 -3.6746 6.3590 -3.8630 15 1 -4.5912 4.1873 -4.4325 16 6 3.4537 1.4363 0.3147 17 1 3.8245 2.4489 0.1558 18 6 4.2106 0.4674 -0.5958 19 6 3.6697 1.0375 1.7759 20 7 2.8510 1.8903 2.6411 21 6 2.8795 1.7193 3.9776 22 8 3.5832 0.8597 4.4642 23 6 2.0369 2.5962 4.8676 24 6 2.2498 2.2034 6.3069 25 6 1.4426 1.2433 6.8880 26 6 1.6410 0.8795 8.2067 27 6 2.6398 1.4834 8.9475 28 6 3.4435 2.4473 8.3680 29 6 3.2485 2.8072 7.0476 30 1 -0.3633 0.3769 -0.9561 31 1 -0.3634 -1.0164 0.1516 32 1 -0.3633 0.6396 0.8044 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 2.4624 2.8406 -1.4486 36 1 1.8115 1.3129 -2.0893 37 1 0.3220 3.1433 -3.2034 38 1 -1.6990 4.5825 -5.4359 39 1 5.2748 0.5058 -0.3626 40 1 3.8399 -0.5453 -0.4369 41 1 4.0568 0.7515 -1.6368 42 1 3.3811 -0.0045 1.9146 43 1 4.7214 1.1606 2.0345 44 1 2.2879 2.5776 2.2520 45 1 2.3253 3.6382 4.7293 46 1 0.9853 2.4729 4.6087 47 1 0.6591 0.7750 6.3106 48 1 1.0128 0.1268 8.6596 49 1 2.7919 1.2023 9.9791 50 1 4.2235 2.9193 8.9469 51 1 3.8760 3.5607 6.5950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154059221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:03 Heat of formation + Delta-G solvation = -65.087522 kcal Electronic energy + Delta-G solvation = -30545.499939 eV Core-core repulsion = 26443.830752 eV Total energy + Delta-G solvation = -4101.669187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.10929 -40.50482 -39.61086 -38.72558 -35.89684 -35.31953 -33.83296 -33.17276 -32.76245 -31.74373 -31.13589 -28.98937 -27.99766 -26.72884 -25.87927 -23.78057 -23.44804 -22.63469 -21.30806 -21.00791 -20.37821 -19.73944 -18.15740 -17.69521 -17.60699 -17.20465 -17.02740 -16.52452 -16.46175 -16.31067 -15.83813 -15.80359 -15.44378 -15.30863 -14.80576 -14.53008 -14.25496 -14.17828 -13.98060 -13.76350 -13.66646 -13.54315 -13.46934 -13.32392 -13.17207 -12.98501 -12.86825 -12.81961 -12.47208 -12.33142 -12.10934 -12.04367 -11.97067 -11.84707 -11.82770 -11.62079 -11.30667 -10.92530 -10.13392 -9.94091 -9.87224 -9.77696 -9.60024 -9.15100 -8.39394 -5.85740 0.45268 0.54421 1.38751 1.43653 1.56691 1.71845 2.20225 2.29752 2.34883 2.74594 2.98896 3.28635 3.55910 3.74094 3.76399 3.96591 4.01666 4.11904 4.16491 4.18874 4.30079 4.30366 4.36125 4.40124 4.49772 4.53964 4.62228 4.64402 4.65897 4.68043 4.68852 4.75401 4.80153 4.84387 4.94691 5.04714 5.15046 5.17936 5.18788 5.29044 5.47754 5.54201 5.58222 5.60114 5.64378 5.70787 5.95999 6.15527 6.17495 6.23448 6.67276 6.71714 7.24074 7.33752 7.70387 8.27314 8.78485 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.002302 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.556319 B =12158.298371 C =13613.350430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.064 3.936 3 N -0.520 5.520 4 C 0.057 3.943 5 C 0.450 3.550 6 O -0.597 6.597 7 N -0.585 5.585 8 C -0.318 4.318 9 H 0.079 0.921 10 C -0.018 4.018 11 N -0.925 5.925 12 Si 0.986 3.014 13 H -0.273 1.273 14 H -0.274 1.274 15 H -0.276 1.276 16 C 0.072 3.928 17 H 0.099 0.901 18 C -0.179 4.179 19 C 0.135 3.865 20 N -0.709 5.709 21 C 0.514 3.486 22 O -0.583 6.583 23 C -0.102 4.102 24 C -0.078 4.078 25 C -0.127 4.127 26 C -0.130 4.130 27 C -0.130 4.130 28 C -0.128 4.128 29 C -0.122 4.122 30 H 0.024 0.976 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.392 0.608 38 H 0.274 0.726 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.414 0.586 45 H 0.122 0.878 46 H 0.111 0.889 47 H 0.120 0.880 48 H 0.138 0.862 49 H 0.143 0.857 50 H 0.142 0.858 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.498 -5.037 16.050 20.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.064 4.064 3 N -0.244 5.244 4 C -0.074 4.074 5 C 0.237 3.763 6 O -0.481 6.481 7 N -0.224 5.224 8 C -0.448 4.448 9 H 0.097 0.903 10 C -0.217 4.217 11 N -0.567 5.567 12 Si 0.811 3.189 13 H -0.198 1.198 14 H -0.200 1.200 15 H -0.201 1.201 16 C -0.036 4.036 17 H 0.117 0.883 18 C -0.238 4.238 19 C 0.011 3.989 20 N -0.360 5.360 21 C 0.301 3.699 22 O -0.464 6.464 23 C -0.141 4.141 24 C -0.078 4.078 25 C -0.145 4.145 26 C -0.148 4.148 27 C -0.148 4.148 28 C -0.146 4.146 29 C -0.140 4.140 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.225 0.775 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.251 0.749 45 H 0.140 0.860 46 H 0.129 0.871 47 H 0.138 0.862 48 H 0.155 0.845 49 H 0.161 0.839 50 H 0.160 0.840 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.268 -5.323 17.259 21.833 hybrid contribution -0.703 0.196 -1.696 1.846 sum 11.564 -5.127 15.563 20.055 Atomic orbital electron populations 1.21723 0.96066 0.99984 1.01222 1.22073 0.94975 0.88437 1.00897 1.61606 1.14984 1.16930 1.30862 1.21771 0.94420 0.99603 0.91597 1.20737 0.89621 0.82362 0.83594 1.90485 1.64134 1.61206 1.32241 1.41970 1.15276 1.54340 1.10803 1.19615 0.92522 1.35834 0.96779 0.90315 1.25937 1.03208 0.98118 0.94436 1.69680 1.39284 1.47059 1.00726 0.84956 0.77823 0.77993 0.78111 1.19765 1.19956 1.20148 1.22093 0.86583 1.01316 0.93616 0.88288 1.22383 1.01794 0.99766 0.99859 1.21361 0.95040 0.94240 0.88264 1.45903 1.46463 1.38153 1.05480 1.20819 0.82079 0.84052 0.82919 1.90672 1.43620 1.36534 1.75541 1.20708 1.01707 1.01116 0.90589 1.19513 0.96624 0.97270 0.94412 1.21231 0.99947 0.97287 0.96060 1.21401 0.98872 1.00328 0.94173 1.21469 0.95633 0.96774 1.00955 1.21430 1.00012 0.98033 0.95103 1.21241 0.97297 1.00503 0.94966 0.95667 0.92511 0.93020 0.90305 0.93684 0.87523 0.91556 0.77467 0.91711 0.90155 0.91980 0.91687 0.92644 0.90626 0.74894 0.85964 0.87121 0.86176 0.84457 0.83917 0.84014 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 8.42 71.98 0.61 -3.83 16 2 C 0.06 1.70 4.36 86.31 0.38 2.07 16 3 N -0.52 -13.85 3.40 -875.50 -2.98 -16.83 16 4 C 0.06 1.74 4.70 85.56 0.40 2.14 16 5 C 0.45 19.45 6.11 87.66 0.54 19.98 16 6 O -0.60 -29.48 13.25 -3.05 -0.04 -29.52 16 7 N -0.59 -28.47 5.29 -306.98 -1.62 -30.09 16 8 C -0.32 -17.38 9.68 84.04 0.81 -16.57 16 9 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 10 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 11 N -0.93 -49.41 13.05 21.66 0.28 -49.13 16 12 Si 0.99 42.59 29.55 68.60 2.03 44.62 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 14 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 15 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 16 C 0.07 1.43 2.41 44.91 0.11 1.54 16 17 H 0.10 1.81 7.71 -2.38 -0.02 1.79 16 18 C -0.18 -2.86 8.46 71.98 0.61 -2.25 16 19 C 0.14 2.90 4.95 86.38 0.43 3.33 16 20 N -0.71 -16.64 5.39 -463.08 -2.50 -19.13 16 21 C 0.51 13.36 7.82 87.66 0.69 14.05 16 22 O -0.58 -19.32 16.03 -3.01 -0.05 -19.37 16 23 C -0.10 -2.14 5.83 29.10 0.17 -1.97 16 24 C -0.08 -1.80 4.37 -19.86 -0.09 -1.89 16 25 C -0.13 -2.93 9.70 22.27 0.22 -2.71 16 26 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 27 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 28 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 29 C -0.12 -2.58 9.70 22.27 0.22 -2.36 16 30 H 0.02 0.97 6.33 -2.39 -0.02 0.96 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 2.01 6.98 -2.39 -0.02 2.00 16 33 H 0.08 1.96 6.24 -2.39 -0.01 1.94 16 34 H 0.05 1.08 6.74 -2.39 -0.02 1.07 16 35 H 0.11 2.77 7.52 -2.39 -0.02 2.76 16 36 H 0.07 1.87 7.57 -2.39 -0.02 1.85 16 37 H 0.39 18.42 7.90 -92.71 -0.73 17.69 16 38 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 39 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.06 1.02 6.61 -2.39 -0.02 1.01 16 41 H 0.06 1.05 7.56 -2.39 -0.02 1.03 16 42 H 0.06 1.32 6.62 -2.39 -0.02 1.30 16 43 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 44 H 0.41 9.84 8.14 -92.71 -0.75 9.09 16 45 H 0.12 2.01 8.08 -2.39 -0.02 1.99 16 46 H 0.11 2.20 8.08 -2.39 -0.02 2.18 16 47 H 0.12 2.61 8.06 -2.91 -0.02 2.58 16 48 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 49 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 50 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 51 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -69.63 411.70 0.80 -68.83 By element: Atomic # 1 Polarization: 46.76 SS G_CDS: -0.54 Total: 46.22 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 6.22 Total: 4.40 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -6.81 Total: -115.18 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -0.09 Total: -48.89 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -69.63 0.80 -68.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154059221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.738 kcal (2) G-P(sol) polarization free energy of solvation -69.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds