Wall clock time and date at job start Wed Apr 1 2020 05:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47063 * 2 1 4 4 C 1.46899 * 111.00064 * 163.00242 * 3 2 1 5 5 C 1.46904 * 110.99521 * 286.95454 * 3 2 1 6 6 H 1.08991 * 109.47437 * 316.69397 * 5 3 2 7 7 C 1.50701 * 109.46966 * 76.69611 * 5 3 2 8 8 O 1.21285 * 120.00119 * 30.58454 * 7 5 3 9 9 N 1.34775 * 119.99992 * 210.57846 * 7 5 3 10 10 C 1.46500 * 120.00309 * 179.97438 * 9 7 5 11 11 H 1.09002 * 110.88334 * 31.12306 * 10 9 7 12 12 C 1.54906 * 111.00410 * 267.20184 * 10 9 7 13 13 N 1.47428 * 104.83465 * 204.91257 * 12 10 9 14 14 C 1.36934 * 125.65252 * 204.10574 * 13 12 10 15 15 H 1.07995 * 119.99719 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99831 * 180.02562 * 14 13 12 17 17 N 1.31624 * 120.00227 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99768 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47148 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47366 * 119.99760 * 18 16 14 21 21 H 1.48505 * 109.46765 * 239.99645 * 18 16 14 22 22 C 1.47023 * 108.69766 * 24.12880 * 13 12 10 23 23 C 1.54327 * 107.27474 * 358.93931 * 22 13 12 24 24 H 1.09002 * 110.87179 * 96.23855 * 23 22 13 25 25 O 1.42895 * 110.72326 * 219.44226 * 23 22 13 26 26 C 1.50703 * 109.46888 * 196.69059 * 5 3 2 27 27 C 1.38233 * 119.99916 * 313.42511 * 26 5 3 28 28 C 1.38239 * 119.99841 * 179.80745 * 27 26 5 29 29 C 1.38235 * 119.99913 * 0.41890 * 28 27 26 30 30 C 1.38237 * 120.00100 * 359.80810 * 29 28 27 31 31 C 1.38235 * 119.99777 * 133.69060 * 26 5 3 32 32 H 1.08997 * 109.47382 * 70.66548 * 1 2 3 33 33 H 1.09010 * 109.47223 * 190.66741 * 1 2 3 34 34 H 1.09002 * 109.47208 * 310.66423 * 1 2 3 35 35 H 1.08999 * 109.47312 * 119.99718 * 2 1 3 36 36 H 1.09005 * 109.47105 * 239.99831 * 2 1 3 37 37 H 1.09003 * 109.47016 * 65.61525 * 4 3 2 38 38 H 1.09000 * 109.46978 * 185.61449 * 4 3 2 39 39 H 1.08997 * 109.47020 * 305.61589 * 4 3 2 40 40 H 0.96997 * 120.00003 * 0.02562 * 9 7 5 41 41 H 1.09003 * 110.37088 * 323.75060 * 12 10 9 42 42 H 1.09005 * 110.37111 * 86.07797 * 12 10 9 43 43 H 0.96992 * 119.99566 * 180.02562 * 17 16 14 44 44 H 1.09003 * 109.88448 * 239.52299 * 22 13 12 45 45 H 1.09003 * 110.01358 * 118.42977 * 22 13 12 46 46 H 0.96694 * 113.99987 * 293.52778 * 25 23 22 47 47 H 1.07999 * 120.00224 * 359.97438 * 27 26 5 48 48 H 1.07996 * 120.00616 * 180.20505 * 28 27 26 49 49 H 1.08001 * 120.00276 * 179.78940 * 29 28 27 50 50 H 1.08001 * 120.00197 * 179.97438 * 30 29 28 51 51 H 1.07993 * 120.00099 * 359.97438 * 31 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4316 1.4442 0.4009 5 6 1.8180 2.0146 -1.3119 6 1 2.0974 1.3134 -2.0982 7 6 0.3681 2.3943 -1.4693 8 8 -0.2891 2.6955 -0.4955 9 7 -0.1982 2.3993 -2.6923 10 6 -1.6078 2.7678 -2.8453 11 1 -1.9045 3.4925 -2.0871 12 6 -2.5172 1.5145 -2.8026 13 7 -3.7298 1.9025 -3.5461 14 6 -4.9702 1.3415 -3.3985 15 1 -5.1204 0.5428 -2.6873 16 6 -6.0344 1.7994 -4.1631 17 7 -5.8514 2.7732 -5.0296 18 14 -7.7267 1.0346 -3.9613 19 1 -7.6678 -0.0327 -2.9305 20 1 -8.6946 2.0786 -3.5388 21 1 -8.1628 0.4495 -5.2547 22 6 -3.3864 2.9911 -4.4726 23 6 -1.8896 3.3087 -4.2720 24 1 -1.2796 2.7871 -5.0095 25 8 -1.6589 4.7176 -4.3333 26 6 2.6747 3.2503 -1.4130 27 6 2.7040 4.1581 -0.3710 28 6 3.4929 5.2897 -0.4621 29 6 4.2457 5.5176 -1.5988 30 6 4.2128 4.6121 -2.6428 31 6 3.4269 3.4786 -2.5501 32 1 -0.3634 0.3402 -0.9697 33 1 -0.3634 -1.0100 0.1902 34 1 -0.3634 0.6697 0.7795 35 1 1.8933 -0.5138 0.8900 36 1 1.8933 -0.5139 -0.8900 37 1 4.0439 0.9457 -0.3506 38 1 3.7409 2.4857 0.4891 39 1 3.5577 0.9451 1.3617 40 1 0.3272 2.1581 -3.4711 41 1 -2.0262 0.6726 -3.2907 42 1 -2.7684 1.2629 -1.7722 43 1 -6.5951 3.0933 -5.5635 44 1 -3.9859 3.8731 -4.2469 45 1 -3.5638 2.6758 -5.5009 46 1 -1.8209 5.1051 -5.2042 47 1 2.1126 3.9821 0.5154 48 1 3.5184 5.9973 0.3533 49 1 4.8595 6.4033 -1.6715 50 1 4.8007 4.7904 -3.5311 51 1 3.4010 2.7713 -3.3657 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197723047.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:15 Heat of formation + Delta-G solvation = -7.453239 kcal Electronic energy + Delta-G solvation = -32079.426417 eV Core-core repulsion = 27980.256440 eV Total energy + Delta-G solvation = -4099.169977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.66255 -39.04506 -37.95614 -36.82239 -35.03897 -33.96079 -32.59158 -31.64650 -31.14604 -30.17652 -28.71798 -27.81657 -26.74880 -24.68342 -24.20423 -22.84380 -22.05117 -21.64676 -20.53443 -20.23691 -19.80092 -17.50375 -17.15500 -17.00132 -16.57467 -16.06875 -15.97732 -15.44523 -14.81074 -14.77206 -14.49630 -14.22974 -14.16800 -13.88722 -13.67030 -13.41762 -13.23512 -13.11791 -12.91087 -12.68435 -12.59098 -12.41489 -12.20029 -12.02445 -11.66998 -11.64099 -11.41973 -11.24645 -11.19363 -11.11433 -10.88660 -10.82729 -10.74727 -10.12465 -9.89147 -9.83724 -9.79111 -9.32855 -9.04993 -8.78734 -8.74623 -8.59538 -8.47232 -6.90569 -5.75720 -3.10165 1.09838 1.25594 2.85534 3.14902 3.39140 3.45033 3.47401 3.55461 3.97205 4.43809 4.47330 4.64901 4.66804 4.82668 4.86065 4.92266 4.96953 5.04787 5.12681 5.22991 5.27869 5.33788 5.42499 5.45202 5.46536 5.51149 5.60268 5.68766 5.74568 5.75333 5.84218 5.88233 5.90510 6.05113 6.10558 6.15731 6.26003 6.36850 6.37753 6.46691 6.58446 6.62810 6.75400 6.81962 6.91003 6.95473 7.33662 7.48037 7.72437 7.79119 8.14173 8.18141 8.52658 9.15732 9.75898 10.39008 11.36042 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015068 B = 0.002986 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.740852 B = 9375.711230 C =10719.018884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 N -0.517 5.517 4 C 0.020 3.980 5 C 0.111 3.889 6 H 0.065 0.935 7 C 0.526 3.474 8 O -0.510 6.510 9 N -0.718 5.718 10 C 0.142 3.858 11 H 0.104 0.896 12 C 0.132 3.868 13 N -0.600 5.600 14 C -0.227 4.227 15 H 0.081 0.919 16 C -0.008 4.008 17 N -0.923 5.923 18 Si 0.914 3.086 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.154 3.846 23 C 0.068 3.932 24 H 0.055 0.945 25 O -0.562 6.562 26 C -0.085 4.085 27 C -0.083 4.083 28 C -0.125 4.125 29 C -0.115 4.115 30 C -0.123 4.123 31 C -0.109 4.109 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.033 0.967 37 H 0.024 0.976 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.393 0.607 41 H 0.022 0.978 42 H 0.050 0.950 43 H 0.252 0.748 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.375 0.625 47 H 0.135 0.865 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.122 0.878 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.667 0.130 4.596 24.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.075 4.075 3 N -0.241 5.241 4 C -0.128 4.128 5 C -0.001 4.001 6 H 0.083 0.917 7 C 0.311 3.689 8 O -0.383 6.383 9 N -0.369 5.369 10 C 0.036 3.964 11 H 0.122 0.878 12 C 0.004 3.996 13 N -0.327 5.327 14 C -0.355 4.355 15 H 0.099 0.901 16 C -0.204 4.204 17 N -0.571 5.571 18 Si 0.745 3.255 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.218 1.218 22 C 0.028 3.972 23 C 0.008 3.992 24 H 0.073 0.927 25 O -0.367 6.367 26 C -0.085 4.085 27 C -0.101 4.101 28 C -0.143 4.143 29 C -0.133 4.133 30 C -0.141 4.141 31 C -0.127 4.127 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.043 0.957 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.226 0.774 41 H 0.039 0.961 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.222 0.778 47 H 0.153 0.847 48 H 0.141 0.859 49 H 0.139 0.861 50 H 0.140 0.860 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 22.827 0.535 6.227 23.667 hybrid contribution -0.345 -0.878 -1.740 1.979 sum 22.482 -0.343 4.488 22.928 Atomic orbital electron populations 1.21966 0.93842 1.01627 1.03509 1.22209 0.97136 0.87443 1.00701 1.61749 1.18818 1.17809 1.25771 1.22573 0.87107 1.03118 0.99982 1.20528 0.92956 0.94342 0.92249 0.91698 1.19978 0.87910 0.77748 0.83308 1.90707 1.63336 1.46312 1.37976 1.45926 1.12268 1.70146 1.08569 1.22215 0.79181 0.97735 0.97234 0.87762 1.21837 0.87813 0.93390 0.96562 1.44246 1.04625 1.40325 1.43538 1.19132 0.83871 1.14081 1.18439 0.90106 1.24815 0.98222 0.98645 0.98723 1.69936 1.30384 1.29538 1.27243 0.86002 0.83953 0.78295 0.77273 1.20410 1.21655 1.21751 1.21810 0.87671 0.92956 0.94738 1.23461 0.99048 0.81217 0.95450 0.92685 1.86481 1.91531 1.21741 1.36923 1.19398 0.97969 0.95775 0.95386 1.21157 0.97301 0.92788 0.98890 1.21198 0.97306 0.97503 0.98316 1.21193 0.99215 0.99107 0.93825 1.21061 0.99586 0.94542 0.98893 1.21004 0.96712 0.98053 0.96972 0.92689 0.92698 0.90426 0.90517 0.94859 0.95729 0.90276 0.91160 0.77357 0.96065 0.93203 0.93729 0.92132 0.93402 0.77810 0.84688 0.85902 0.86139 0.85982 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.51 37.16 0.32 -1.71 16 2 C 0.05 0.58 5.70 -3.82 -0.02 0.55 16 3 N -0.52 -6.07 4.03 -237.69 -0.96 -7.03 16 4 C 0.02 0.19 8.76 60.06 0.53 0.71 16 5 C 0.11 1.34 2.18 -70.01 -0.15 1.19 16 6 H 0.07 0.68 7.55 -51.93 -0.39 0.28 16 7 C 0.53 8.16 4.26 -10.99 -0.05 8.11 16 8 O -0.51 -9.80 14.44 5.55 0.08 -9.72 16 9 N -0.72 -10.87 5.20 -51.73 -0.27 -11.14 16 10 C 0.14 2.70 3.15 -65.79 -0.21 2.49 16 11 H 0.10 2.33 7.54 -51.93 -0.39 1.93 16 12 C 0.13 2.80 6.93 -2.53 -0.02 2.79 16 13 N -0.60 -15.37 3.39 -170.07 -0.58 -15.95 16 14 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 15 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 16 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 17 N -0.92 -26.83 10.31 55.49 0.57 -26.26 16 18 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 22 C 0.15 3.67 5.15 -3.06 -0.02 3.65 16 23 C 0.07 1.28 3.98 -24.90 -0.10 1.18 16 24 H 0.06 0.90 8.00 -51.93 -0.42 0.49 16 25 O -0.56 -9.97 13.39 -35.23 -0.47 -10.45 16 26 C -0.08 -0.97 3.62 -104.62 -0.38 -1.35 16 27 C -0.08 -0.98 7.07 -39.58 -0.28 -1.26 16 28 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 29 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 30 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 31 C -0.11 -1.07 9.67 -39.58 -0.38 -1.45 16 32 H 0.05 0.83 5.97 -51.93 -0.31 0.52 16 33 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.08 1.21 7.41 -51.93 -0.38 0.83 16 35 H 0.08 0.73 7.85 -51.93 -0.41 0.32 16 36 H 0.03 0.33 7.78 -51.93 -0.40 -0.07 16 37 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.08 0.76 5.15 -51.93 -0.27 0.49 16 39 H 0.07 0.58 7.96 -51.93 -0.41 0.16 16 40 H 0.39 4.85 8.57 -40.82 -0.35 4.50 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.06 1.64 7.30 -51.93 -0.38 1.26 16 45 H 0.05 1.23 7.50 -51.93 -0.39 0.84 16 46 H 0.38 5.08 9.12 45.56 0.42 5.49 16 47 H 0.14 1.76 7.92 -52.49 -0.42 1.35 16 48 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 49 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 50 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 51 H 0.12 0.95 7.99 -52.49 -0.42 0.53 16 LS Contribution 403.02 15.07 6.07 6.07 Total: -1.00 -33.57 403.02 -10.21 -43.78 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -7.43 Total: 10.10 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -2.20 Total: 3.46 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -1.23 Total: -60.38 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.39 Total: -20.17 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.57 -10.21 -43.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197723047.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.326 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds