Wall clock time and date at job start Wed Apr 1 2020 05:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47063 * 2 1 4 4 C 1.46899 * 111.00064 * 163.00242 * 3 2 1 5 5 C 1.46904 * 110.99521 * 286.95454 * 3 2 1 6 6 H 1.08991 * 109.47437 * 316.69397 * 5 3 2 7 7 C 1.50701 * 109.46966 * 76.69611 * 5 3 2 8 8 O 1.21285 * 120.00119 * 30.58454 * 7 5 3 9 9 N 1.34775 * 119.99992 * 210.57846 * 7 5 3 10 10 C 1.46500 * 120.00309 * 179.97438 * 9 7 5 11 11 H 1.09002 * 110.88334 * 31.12306 * 10 9 7 12 12 C 1.54906 * 111.00410 * 267.20184 * 10 9 7 13 13 N 1.47428 * 104.83465 * 204.91257 * 12 10 9 14 14 C 1.36934 * 125.65252 * 204.10574 * 13 12 10 15 15 H 1.07995 * 119.99719 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99831 * 180.02562 * 14 13 12 17 17 N 1.31624 * 120.00227 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99768 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47148 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47366 * 119.99760 * 18 16 14 21 21 H 1.48505 * 109.46765 * 239.99645 * 18 16 14 22 22 C 1.47023 * 108.69766 * 24.12880 * 13 12 10 23 23 C 1.54327 * 107.27474 * 358.93931 * 22 13 12 24 24 H 1.09002 * 110.87179 * 96.23855 * 23 22 13 25 25 O 1.42895 * 110.72326 * 219.44226 * 23 22 13 26 26 C 1.50703 * 109.46888 * 196.69059 * 5 3 2 27 27 C 1.38233 * 119.99916 * 313.42511 * 26 5 3 28 28 C 1.38239 * 119.99841 * 179.80745 * 27 26 5 29 29 C 1.38235 * 119.99913 * 0.41890 * 28 27 26 30 30 C 1.38237 * 120.00100 * 359.80810 * 29 28 27 31 31 C 1.38235 * 119.99777 * 133.69060 * 26 5 3 32 32 H 1.08997 * 109.47382 * 70.66548 * 1 2 3 33 33 H 1.09010 * 109.47223 * 190.66741 * 1 2 3 34 34 H 1.09002 * 109.47208 * 310.66423 * 1 2 3 35 35 H 1.08999 * 109.47312 * 119.99718 * 2 1 3 36 36 H 1.09005 * 109.47105 * 239.99831 * 2 1 3 37 37 H 1.09003 * 109.47016 * 65.61525 * 4 3 2 38 38 H 1.09000 * 109.46978 * 185.61449 * 4 3 2 39 39 H 1.08997 * 109.47020 * 305.61589 * 4 3 2 40 40 H 0.96997 * 120.00003 * 0.02562 * 9 7 5 41 41 H 1.09003 * 110.37088 * 323.75060 * 12 10 9 42 42 H 1.09005 * 110.37111 * 86.07797 * 12 10 9 43 43 H 0.96992 * 119.99566 * 180.02562 * 17 16 14 44 44 H 1.09003 * 109.88448 * 239.52299 * 22 13 12 45 45 H 1.09003 * 110.01358 * 118.42977 * 22 13 12 46 46 H 0.96694 * 113.99987 * 293.52778 * 25 23 22 47 47 H 1.07999 * 120.00224 * 359.97438 * 27 26 5 48 48 H 1.07996 * 120.00616 * 180.20505 * 28 27 26 49 49 H 1.08001 * 120.00276 * 179.78940 * 29 28 27 50 50 H 1.08001 * 120.00197 * 179.97438 * 30 29 28 51 51 H 1.07993 * 120.00099 * 359.97438 * 31 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4316 1.4442 0.4009 5 6 1.8180 2.0146 -1.3119 6 1 2.0974 1.3134 -2.0982 7 6 0.3681 2.3943 -1.4693 8 8 -0.2891 2.6955 -0.4955 9 7 -0.1982 2.3993 -2.6923 10 6 -1.6078 2.7678 -2.8453 11 1 -1.9045 3.4925 -2.0871 12 6 -2.5172 1.5145 -2.8026 13 7 -3.7298 1.9025 -3.5461 14 6 -4.9702 1.3415 -3.3985 15 1 -5.1204 0.5428 -2.6873 16 6 -6.0344 1.7994 -4.1631 17 7 -5.8514 2.7732 -5.0296 18 14 -7.7267 1.0346 -3.9613 19 1 -7.6678 -0.0327 -2.9305 20 1 -8.6946 2.0786 -3.5388 21 1 -8.1628 0.4495 -5.2547 22 6 -3.3864 2.9911 -4.4726 23 6 -1.8896 3.3087 -4.2720 24 1 -1.2796 2.7871 -5.0095 25 8 -1.6589 4.7176 -4.3333 26 6 2.6747 3.2503 -1.4130 27 6 2.7040 4.1581 -0.3710 28 6 3.4929 5.2897 -0.4621 29 6 4.2457 5.5176 -1.5988 30 6 4.2128 4.6121 -2.6428 31 6 3.4269 3.4786 -2.5501 32 1 -0.3634 0.3402 -0.9697 33 1 -0.3634 -1.0100 0.1902 34 1 -0.3634 0.6697 0.7795 35 1 1.8933 -0.5138 0.8900 36 1 1.8933 -0.5139 -0.8900 37 1 4.0439 0.9457 -0.3506 38 1 3.7409 2.4857 0.4891 39 1 3.5577 0.9451 1.3617 40 1 0.3272 2.1581 -3.4711 41 1 -2.0262 0.6726 -3.2907 42 1 -2.7684 1.2629 -1.7722 43 1 -6.5951 3.0933 -5.5635 44 1 -3.9859 3.8731 -4.2469 45 1 -3.5638 2.6758 -5.5009 46 1 -1.8209 5.1051 -5.2042 47 1 2.1126 3.9821 0.5154 48 1 3.5184 5.9973 0.3533 49 1 4.8595 6.4033 -1.6715 50 1 4.8007 4.7904 -3.5311 51 1 3.4010 2.7713 -3.3657 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197723047.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:14 Heat of formation + Delta-G solvation = -32.937011 kcal Electronic energy + Delta-G solvation = -32080.531476 eV Core-core repulsion = 27980.256440 eV Total energy + Delta-G solvation = -4100.275036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.70528 -40.24360 -39.26451 -37.85265 -36.69000 -35.50521 -33.77599 -33.23821 -31.91033 -31.08013 -30.31252 -29.20823 -28.21882 -26.33203 -25.33213 -23.59370 -23.03602 -22.70227 -22.28110 -21.78128 -20.90716 -19.12653 -18.52454 -18.10227 -17.89965 -17.42179 -16.83901 -16.78484 -16.26190 -15.93214 -15.65909 -15.57848 -15.28850 -15.12652 -14.87792 -14.48766 -14.47439 -14.21935 -14.15564 -14.05942 -13.77753 -13.68774 -13.49493 -13.18038 -13.17795 -12.94713 -12.80298 -12.76070 -12.51399 -12.42199 -12.06291 -12.02324 -11.91034 -11.89218 -11.70839 -11.54913 -11.11843 -10.81185 -10.78467 -10.10995 -9.78726 -9.58919 -9.30156 -8.97853 -7.89689 -5.26938 0.33923 0.51979 1.44666 1.46339 1.56470 1.67464 1.96621 2.46409 2.77572 3.06545 3.12407 3.31479 3.53998 3.60430 3.78773 3.88745 3.92833 4.04447 4.05091 4.18249 4.20291 4.22818 4.27958 4.32664 4.43912 4.50835 4.55352 4.60716 4.63617 4.67867 4.73159 4.80736 4.88699 4.98058 5.03905 5.05454 5.06686 5.18309 5.35838 5.37717 5.42725 5.50147 5.55789 5.60371 5.64578 5.65165 5.93741 6.07748 6.11792 6.12491 6.60505 6.85745 7.03780 7.32810 7.68200 8.30733 9.20159 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015068 B = 0.002986 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.740852 B = 9375.711230 C =10719.018884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 N -0.539 5.539 4 C 0.025 3.975 5 C 0.121 3.879 6 H 0.090 0.910 7 C 0.525 3.475 8 O -0.554 6.554 9 N -0.705 5.705 10 C 0.158 3.842 11 H 0.066 0.934 12 C 0.136 3.864 13 N -0.621 5.621 14 C -0.246 4.246 15 H 0.081 0.919 16 C -0.061 4.061 17 N -0.948 5.948 18 Si 0.980 3.020 19 H -0.268 1.268 20 H -0.293 1.293 21 H -0.286 1.286 22 C 0.162 3.838 23 C 0.091 3.909 24 H 0.094 0.906 25 O -0.569 6.569 26 C -0.098 4.098 27 C -0.102 4.102 28 C -0.135 4.135 29 C -0.116 4.116 30 C -0.124 4.124 31 C -0.110 4.110 32 H 0.034 0.966 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.412 0.588 41 H 0.042 0.958 42 H 0.031 0.969 43 H 0.249 0.751 44 H 0.019 0.981 45 H 0.027 0.973 46 H 0.395 0.605 47 H 0.110 0.890 48 H 0.133 0.867 49 H 0.144 0.856 50 H 0.149 0.851 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.519 -0.664 3.447 26.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.071 4.071 3 N -0.264 5.264 4 C -0.122 4.122 5 C 0.010 3.990 6 H 0.108 0.892 7 C 0.312 3.688 8 O -0.430 6.430 9 N -0.358 5.358 10 C 0.051 3.949 11 H 0.084 0.916 12 C 0.009 3.991 13 N -0.349 5.349 14 C -0.375 4.375 15 H 0.099 0.901 16 C -0.255 4.255 17 N -0.596 5.596 18 Si 0.808 3.192 19 H -0.192 1.192 20 H -0.220 1.220 21 H -0.213 1.213 22 C 0.036 3.964 23 C 0.031 3.969 24 H 0.112 0.888 25 O -0.377 6.377 26 C -0.099 4.099 27 C -0.120 4.120 28 C -0.153 4.153 29 C -0.134 4.134 30 C -0.141 4.141 31 C -0.129 4.129 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.249 0.751 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.037 0.963 45 H 0.045 0.955 46 H 0.245 0.755 47 H 0.128 0.872 48 H 0.151 0.849 49 H 0.162 0.838 50 H 0.167 0.833 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 25.739 -0.268 5.063 26.233 hybrid contribution -1.207 -0.568 -1.327 1.882 sum 24.532 -0.836 3.736 24.829 Atomic orbital electron populations 1.21887 0.96102 1.01363 1.01084 1.22201 0.95038 0.87514 1.02389 1.61640 1.20525 1.18242 1.25981 1.22552 0.85710 1.03120 1.00810 1.20431 0.89977 0.95346 0.93280 0.89249 1.20739 0.89325 0.76352 0.82422 1.90695 1.64781 1.48123 1.39440 1.45704 1.10568 1.69930 1.09609 1.21643 0.81102 0.95664 0.96446 0.91559 1.21888 0.87055 0.95008 0.95163 1.44518 1.05248 1.40722 1.44435 1.19469 0.85343 1.14288 1.18409 0.90125 1.25647 1.01749 0.99349 0.98708 1.70137 1.31030 1.30589 1.27855 0.84992 0.79255 0.77530 0.77433 1.19198 1.21978 1.21312 1.21607 0.90826 0.90777 0.93145 1.23170 0.95730 0.82217 0.95826 0.88825 1.86449 1.91132 1.21154 1.38947 1.19405 0.98810 0.95522 0.96138 1.21067 0.98166 0.94145 0.98630 1.21391 0.97292 0.97205 0.99399 1.21529 0.98739 0.99927 0.93221 1.21440 0.99169 0.93891 0.99632 1.21292 0.96067 0.98783 0.96734 0.94738 0.91438 0.93547 0.88832 0.93035 0.94348 0.90856 0.90182 0.75140 0.94011 0.95027 0.94162 0.96298 0.95517 0.75490 0.87200 0.84896 0.83781 0.83332 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 8.51 71.98 0.61 -3.32 16 2 C 0.06 1.13 5.70 86.30 0.49 1.62 16 3 N -0.54 -12.08 4.03 -905.92 -3.65 -15.73 16 4 C 0.03 0.42 8.76 127.69 1.12 1.54 16 5 C 0.12 2.74 2.18 43.42 0.09 2.83 16 6 H 0.09 1.56 7.55 -2.39 -0.02 1.54 16 7 C 0.53 16.17 4.26 87.66 0.37 16.55 16 8 O -0.55 -22.26 14.44 -3.05 -0.04 -22.30 16 9 N -0.71 -20.58 5.20 -435.97 -2.27 -22.85 16 10 C 0.16 6.07 3.15 46.38 0.15 6.21 16 11 H 0.07 3.09 7.54 -2.39 -0.02 3.07 16 12 C 0.14 5.87 6.93 86.85 0.60 6.48 16 13 N -0.62 -32.71 3.39 -691.97 -2.35 -35.05 16 14 C -0.25 -14.14 10.28 84.03 0.86 -13.27 16 15 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 16 C -0.06 -3.51 5.49 84.86 0.47 -3.05 16 17 N -0.95 -56.57 10.31 21.65 0.22 -56.35 16 18 Si 0.98 46.24 29.55 68.60 2.03 48.26 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 22 C 0.16 7.94 5.15 86.73 0.45 8.38 16 23 C 0.09 3.31 3.98 31.78 0.13 3.44 16 24 H 0.09 2.77 8.00 -2.39 -0.02 2.75 16 25 O -0.57 -19.59 13.39 -148.98 -1.99 -21.58 16 26 C -0.10 -2.07 3.62 -19.87 -0.07 -2.15 16 27 C -0.10 -2.37 7.07 22.27 0.16 -2.21 16 28 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 29 C -0.12 -1.79 10.05 22.27 0.22 -1.57 16 30 C -0.12 -1.78 10.05 22.27 0.22 -1.56 16 31 C -0.11 -1.80 9.67 22.27 0.22 -1.59 16 32 H 0.03 1.04 5.97 -2.39 -0.01 1.03 16 33 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.05 1.52 7.41 -2.39 -0.02 1.50 16 35 H 0.09 1.57 7.85 -2.39 -0.02 1.55 16 36 H 0.05 0.87 7.78 -2.38 -0.02 0.85 16 37 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 1.34 5.15 -2.39 -0.01 1.33 16 39 H 0.08 1.17 7.96 -2.39 -0.02 1.15 16 40 H 0.41 8.95 8.57 -92.71 -0.79 8.16 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 44 H 0.02 1.07 7.30 -2.39 -0.02 1.05 16 45 H 0.03 1.40 7.50 -2.39 -0.02 1.38 16 46 H 0.40 10.07 9.12 -74.06 -0.68 9.40 16 47 H 0.11 3.05 7.92 -2.91 -0.02 3.03 16 48 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 49 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 50 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 51 H 0.14 1.61 7.99 -2.91 -0.02 1.59 16 Total: -1.00 -76.88 403.02 -2.27 -79.15 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: -0.53 Total: 30.46 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 6.31 Total: 15.99 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -8.04 Total: -129.98 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -2.04 Total: -43.88 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -76.88 -2.27 -79.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197723047.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.210 kcal (2) G-P(sol) polarization free energy of solvation -76.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds