Wall clock time and date at job start Wed Apr 1 2020 05:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47022 * 2 1 4 4 C 1.46903 * 110.99834 * 71.78151 * 3 2 1 5 5 C 1.46897 * 111.00167 * 195.72953 * 3 2 1 6 6 H 1.08997 * 109.47570 * 294.67860 * 5 3 2 7 7 C 1.50696 * 109.47631 * 174.67111 * 5 3 2 8 8 O 1.21287 * 119.99884 * 340.00634 * 7 5 3 9 9 N 1.34774 * 120.00080 * 160.00233 * 7 5 3 10 10 C 1.46504 * 119.99846 * 180.02562 * 9 7 5 11 11 H 1.09008 * 110.63940 * 31.85916 * 10 9 7 12 12 C 1.54326 * 110.72136 * 268.52146 * 10 9 7 13 13 N 1.47019 * 107.27118 * 219.44189 * 12 10 9 14 14 C 1.36936 * 125.64775 * 178.97387 * 13 12 10 15 15 H 1.08006 * 119.99847 * 0.02562 * 14 13 12 16 16 C 1.38807 * 120.00137 * 180.02562 * 14 13 12 17 17 N 1.31618 * 120.00221 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00040 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46996 * 90.00245 * 18 16 14 20 20 H 1.48496 * 109.47016 * 210.00236 * 18 16 14 21 21 H 1.48501 * 109.46991 * 330.00087 * 18 16 14 22 22 C 1.47470 * 108.72369 * 358.97880 * 13 12 10 23 23 C 1.54909 * 104.81124 * 24.06420 * 22 13 12 24 24 H 1.09001 * 111.00283 * 81.13857 * 23 22 13 25 25 O 1.42898 * 111.00562 * 204.94889 * 23 22 13 26 26 C 1.50703 * 109.46903 * 54.67169 * 5 3 2 27 27 C 1.38237 * 119.99829 * 45.83488 * 26 5 3 28 28 C 1.38234 * 119.99896 * 179.76881 * 27 26 5 29 29 C 1.38235 * 120.00289 * 0.48207 * 28 27 26 30 30 C 1.38236 * 119.99402 * 359.78941 * 29 28 27 31 31 C 1.38230 * 120.00315 * 226.10748 * 26 5 3 32 32 H 1.08999 * 109.47468 * 174.73552 * 1 2 3 33 33 H 1.09000 * 109.47383 * 294.73929 * 1 2 3 34 34 H 1.09007 * 109.46873 * 54.74068 * 1 2 3 35 35 H 1.09004 * 109.47201 * 240.00012 * 2 1 3 36 36 H 1.09002 * 109.46897 * 119.99745 * 2 1 3 37 37 H 1.09003 * 109.47255 * 179.97438 * 4 3 2 38 38 H 1.08999 * 109.47113 * 299.99681 * 4 3 2 39 39 H 1.08998 * 109.47178 * 59.99711 * 4 3 2 40 40 H 0.96995 * 120.00547 * 359.97438 * 9 7 5 41 41 H 1.09001 * 109.87743 * 338.86585 * 12 10 9 42 42 H 1.09000 * 109.88102 * 99.87078 * 12 10 9 43 43 H 0.96993 * 120.00528 * 180.02562 * 17 16 14 44 44 H 1.09005 * 110.34522 * 265.24892 * 22 13 12 45 45 H 1.08999 * 110.40424 * 142.91523 * 22 13 12 46 46 H 0.96701 * 114.00260 * 295.42594 * 25 23 22 47 47 H 1.08005 * 120.00014 * 359.97438 * 27 26 5 48 48 H 1.08001 * 119.99878 * 180.25475 * 28 27 26 49 49 H 1.07996 * 120.00451 * 179.77297 * 29 28 27 50 50 H 1.08002 * 119.99720 * 179.97438 * 30 29 28 51 51 H 1.08001 * 120.00011 * 0.02562 * 31 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7909 2.0242 1.3027 5 6 3.4397 1.4414 -0.3718 6 1 4.0357 0.9440 0.3933 7 6 3.8718 2.8803 -0.4885 8 8 3.0427 3.7517 -0.6450 9 7 5.1794 3.1991 -0.4189 10 6 5.5994 4.5981 -0.5319 11 1 4.8402 5.2618 -0.1178 12 6 5.9039 4.9599 -2.0009 13 7 7.0910 5.8273 -1.9997 14 6 7.6977 6.3512 -3.1099 15 1 7.3046 6.1356 -4.0925 16 6 8.8179 7.1593 -2.9725 17 7 9.2973 7.4215 -1.7751 18 14 9.6460 7.8733 -4.4871 19 1 9.0413 9.1914 -4.8068 20 1 11.0971 8.0455 -4.2230 21 1 9.4580 6.9507 -5.6354 22 6 7.5205 6.0400 -0.6050 23 6 6.9647 4.8198 0.1709 24 1 7.6123 3.9515 0.0492 25 8 6.7845 5.1311 1.5539 26 6 3.6405 0.7477 -1.6945 27 6 2.7799 1.0021 -2.7460 28 6 2.9669 0.3695 -3.9608 29 6 4.0086 -0.5250 -4.1211 30 6 4.8658 -0.7836 -3.0679 31 6 4.6819 -0.1471 -1.8547 32 1 -0.3634 -1.0233 -0.0943 33 1 -0.3634 0.4301 0.9333 34 1 -0.3633 0.5933 -0.8392 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 2.1630 3.0484 1.2753 38 1 0.7231 2.0311 1.5215 39 1 2.3171 1.4675 2.0781 40 1 5.8425 2.5024 -0.2934 41 1 6.1075 4.0536 -2.5712 42 1 5.0559 5.4888 -2.4358 43 1 10.0799 7.9865 -1.6790 44 1 7.0947 6.9641 -0.2141 45 1 8.6084 6.0661 -0.5422 46 1 7.6070 5.3257 2.0237 47 1 1.9633 1.6976 -2.6194 48 1 2.2970 0.5713 -4.7835 49 1 4.1526 -1.0220 -5.0691 50 1 5.6794 -1.4827 -3.1930 51 1 5.3514 -0.3494 -1.0318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197723052.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:19 Heat of formation + Delta-G solvation = -11.659725 kcal Electronic energy + Delta-G solvation = -31809.866994 eV Core-core repulsion = 27710.514611 eV Total energy + Delta-G solvation = -4099.352384 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.56342 -38.99970 -37.95800 -36.92639 -35.07163 -34.01923 -32.57381 -31.58529 -30.97664 -30.61953 -28.55613 -27.44863 -26.75923 -25.28196 -24.21772 -22.72570 -22.13255 -21.33453 -20.67489 -20.09889 -19.79233 -17.46185 -17.07731 -17.04256 -16.57346 -16.22436 -15.81683 -15.47177 -14.87720 -14.82081 -14.69136 -14.28787 -14.24319 -13.88697 -13.50712 -13.48020 -13.29935 -13.06811 -12.91172 -12.81011 -12.46046 -12.33735 -12.24355 -11.98916 -11.90868 -11.58295 -11.47984 -11.27598 -11.22083 -11.12990 -10.98811 -10.92753 -10.84076 -10.19189 -9.93971 -9.84768 -9.70622 -9.33015 -8.99886 -8.75573 -8.73544 -8.72225 -8.47669 -6.92287 -5.72611 -3.14816 1.16072 1.33023 2.80733 3.11334 3.37736 3.42847 3.44443 3.60044 3.97383 4.40189 4.49620 4.60993 4.71418 4.82903 4.87876 4.90689 4.97685 5.05100 5.12747 5.28195 5.30411 5.36092 5.39188 5.41740 5.43902 5.53288 5.63077 5.63998 5.66328 5.77938 5.81856 5.86656 5.92139 5.97637 6.07712 6.09623 6.19094 6.32962 6.43810 6.44518 6.50114 6.68059 6.76427 6.87571 6.91097 6.96307 7.30459 7.52178 7.68173 7.75592 8.08544 8.24683 8.45028 9.13599 9.74107 10.36566 11.31734 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012526 B = 0.003091 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.872391 B = 9056.951638 C =10437.902868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.514 5.514 4 C 0.020 3.980 5 C 0.111 3.889 6 H 0.065 0.935 7 C 0.523 3.477 8 O -0.516 6.516 9 N -0.713 5.713 10 C 0.144 3.856 11 H 0.101 0.899 12 C 0.131 3.869 13 N -0.600 5.600 14 C -0.221 4.221 15 H 0.080 0.920 16 C -0.011 4.011 17 N -0.925 5.925 18 Si 0.917 3.083 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.130 3.870 23 C 0.067 3.933 24 H 0.061 0.939 25 O -0.566 6.566 26 C -0.083 4.083 27 C -0.081 4.081 28 C -0.123 4.123 29 C -0.115 4.115 30 C -0.121 4.121 31 C -0.111 4.111 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.032 0.968 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.022 0.978 40 H 0.396 0.604 41 H 0.030 0.970 42 H 0.033 0.967 43 H 0.253 0.747 44 H 0.025 0.975 45 H 0.113 0.887 46 H 0.377 0.623 47 H 0.133 0.867 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.148 -19.356 4.587 22.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 N -0.239 5.239 4 C -0.128 4.128 5 C -0.001 4.001 6 H 0.083 0.917 7 C 0.307 3.693 8 O -0.391 6.391 9 N -0.364 5.364 10 C 0.039 3.961 11 H 0.119 0.881 12 C 0.004 3.996 13 N -0.327 5.327 14 C -0.349 4.349 15 H 0.098 0.902 16 C -0.206 4.206 17 N -0.574 5.574 18 Si 0.748 3.252 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.004 3.996 23 C 0.006 3.994 24 H 0.078 0.922 25 O -0.371 6.371 26 C -0.084 4.084 27 C -0.099 4.099 28 C -0.141 4.141 29 C -0.133 4.133 30 C -0.140 4.140 31 C -0.130 4.130 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.041 0.959 40 H 0.229 0.771 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.130 0.870 46 H 0.224 0.776 47 H 0.151 0.849 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.492 -18.409 3.922 22.591 hybrid contribution 1.869 -0.263 0.023 1.888 sum -10.623 -18.672 3.946 21.842 Atomic orbital electron populations 1.21744 0.94572 1.01389 1.02527 1.22181 0.96396 0.88311 1.01084 1.61733 1.14276 1.17246 1.30641 1.22521 1.02129 1.00476 0.87676 1.20455 0.90889 0.93576 0.95190 0.91693 1.20095 0.82597 0.89889 0.76726 1.90706 1.51481 1.49484 1.47405 1.45948 1.07206 1.09359 1.73860 1.21997 0.96229 0.81502 0.96343 0.88074 1.21607 0.90920 0.94424 0.92645 1.44291 1.29010 1.56768 1.02662 1.19109 1.06926 1.23471 0.85417 0.90225 1.24791 0.98594 1.00130 0.97105 1.69729 1.25715 1.41945 1.19974 0.86026 0.78554 0.79070 0.81591 1.21515 1.21614 1.20620 1.22564 1.02714 0.91534 0.82805 1.23648 0.95068 0.99478 0.81166 0.92165 1.86406 1.36172 1.92530 1.22007 1.19337 0.96842 0.97888 0.94298 1.21130 0.98723 0.98231 0.91807 1.21202 0.98341 0.97151 0.97416 1.21198 0.95231 0.98130 0.98770 1.21061 0.99512 1.00277 0.93101 1.21008 0.97319 0.96642 0.98031 0.92435 0.92834 0.91599 0.90252 0.94944 0.90060 0.90834 0.95947 0.77055 0.95191 0.94943 0.93616 0.95679 0.86976 0.77591 0.84880 0.85967 0.86150 0.85971 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.85 37.16 0.37 -0.84 16 2 C 0.05 0.46 5.37 -3.82 -0.02 0.44 16 3 N -0.51 -6.09 3.81 -237.69 -0.90 -7.00 16 4 C 0.02 0.23 9.03 60.07 0.54 0.77 16 5 C 0.11 1.35 2.08 -70.02 -0.15 1.21 16 6 H 0.07 0.69 7.94 -51.93 -0.41 0.27 16 7 C 0.52 8.24 6.12 -10.99 -0.07 8.17 16 8 O -0.52 -10.01 14.79 5.55 0.08 -9.92 16 9 N -0.71 -11.09 5.10 -52.03 -0.27 -11.35 16 10 C 0.14 2.76 3.06 -66.09 -0.20 2.56 16 11 H 0.10 2.16 7.55 -51.92 -0.39 1.77 16 12 C 0.13 2.90 6.99 -3.06 -0.02 2.88 16 13 N -0.60 -15.40 3.40 -170.04 -0.58 -15.98 16 14 C -0.22 -6.16 10.27 -15.06 -0.15 -6.31 16 15 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 16 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 17 N -0.92 -26.36 10.09 55.49 0.56 -25.80 16 18 Si 0.92 21.92 29.55 -169.99 -5.02 16.90 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.13 3.09 5.62 -2.50 -0.01 3.07 16 23 C 0.07 1.26 4.05 -24.58 -0.10 1.16 16 24 H 0.06 1.05 8.01 -51.93 -0.42 0.64 16 25 O -0.57 -9.69 13.47 -35.23 -0.47 -10.17 16 26 C -0.08 -0.97 3.30 -104.62 -0.35 -1.32 16 27 C -0.08 -0.99 8.50 -39.58 -0.34 -1.33 16 28 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 29 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 30 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 31 C -0.11 -1.14 9.67 -39.59 -0.38 -1.52 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.43 6.98 -51.93 -0.36 0.07 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.78 5.98 -51.93 -0.31 0.47 16 36 H 0.03 0.29 8.03 -51.93 -0.42 -0.13 16 37 H 0.08 1.15 6.13 -51.93 -0.32 0.83 16 38 H 0.07 0.75 6.81 -51.93 -0.35 0.40 16 39 H 0.02 0.23 8.11 -51.93 -0.42 -0.19 16 40 H 0.40 5.15 8.56 -40.82 -0.35 4.80 16 41 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.11 2.91 5.88 -51.93 -0.31 2.61 16 46 H 0.38 4.93 9.12 45.56 0.42 5.35 16 47 H 0.13 1.80 7.90 -52.48 -0.41 1.38 16 48 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 49 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 50 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 51 H 0.12 0.99 7.99 -52.49 -0.42 0.57 16 LS Contribution 406.97 15.07 6.13 6.13 Total: -1.00 -32.73 406.97 -10.04 -42.77 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -7.40 Total: 10.74 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -2.17 Total: 3.68 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -1.19 Total: -60.13 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.39 Total: -20.09 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.73 -10.04 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197723052.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.114 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds