Wall clock time and date at job start Wed Apr 1 2020 05:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47022 * 2 1 4 4 C 1.46903 * 110.99834 * 71.78151 * 3 2 1 5 5 C 1.46897 * 111.00167 * 195.72953 * 3 2 1 6 6 H 1.08997 * 109.47570 * 294.67860 * 5 3 2 7 7 C 1.50696 * 109.47631 * 174.67111 * 5 3 2 8 8 O 1.21287 * 119.99884 * 340.00634 * 7 5 3 9 9 N 1.34774 * 120.00080 * 160.00233 * 7 5 3 10 10 C 1.46504 * 119.99846 * 180.02562 * 9 7 5 11 11 H 1.09008 * 110.63940 * 31.85916 * 10 9 7 12 12 C 1.54326 * 110.72136 * 268.52146 * 10 9 7 13 13 N 1.47019 * 107.27118 * 219.44189 * 12 10 9 14 14 C 1.36936 * 125.64775 * 178.97387 * 13 12 10 15 15 H 1.08006 * 119.99847 * 0.02562 * 14 13 12 16 16 C 1.38807 * 120.00137 * 180.02562 * 14 13 12 17 17 N 1.31618 * 120.00221 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00040 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46996 * 90.00245 * 18 16 14 20 20 H 1.48496 * 109.47016 * 210.00236 * 18 16 14 21 21 H 1.48501 * 109.46991 * 330.00087 * 18 16 14 22 22 C 1.47470 * 108.72369 * 358.97880 * 13 12 10 23 23 C 1.54909 * 104.81124 * 24.06420 * 22 13 12 24 24 H 1.09001 * 111.00283 * 81.13857 * 23 22 13 25 25 O 1.42898 * 111.00562 * 204.94889 * 23 22 13 26 26 C 1.50703 * 109.46903 * 54.67169 * 5 3 2 27 27 C 1.38237 * 119.99829 * 45.83488 * 26 5 3 28 28 C 1.38234 * 119.99896 * 179.76881 * 27 26 5 29 29 C 1.38235 * 120.00289 * 0.48207 * 28 27 26 30 30 C 1.38236 * 119.99402 * 359.78941 * 29 28 27 31 31 C 1.38230 * 120.00315 * 226.10748 * 26 5 3 32 32 H 1.08999 * 109.47468 * 174.73552 * 1 2 3 33 33 H 1.09000 * 109.47383 * 294.73929 * 1 2 3 34 34 H 1.09007 * 109.46873 * 54.74068 * 1 2 3 35 35 H 1.09004 * 109.47201 * 240.00012 * 2 1 3 36 36 H 1.09002 * 109.46897 * 119.99745 * 2 1 3 37 37 H 1.09003 * 109.47255 * 179.97438 * 4 3 2 38 38 H 1.08999 * 109.47113 * 299.99681 * 4 3 2 39 39 H 1.08998 * 109.47178 * 59.99711 * 4 3 2 40 40 H 0.96995 * 120.00547 * 359.97438 * 9 7 5 41 41 H 1.09001 * 109.87743 * 338.86585 * 12 10 9 42 42 H 1.09000 * 109.88102 * 99.87078 * 12 10 9 43 43 H 0.96993 * 120.00528 * 180.02562 * 17 16 14 44 44 H 1.09005 * 110.34522 * 265.24892 * 22 13 12 45 45 H 1.08999 * 110.40424 * 142.91523 * 22 13 12 46 46 H 0.96701 * 114.00260 * 295.42594 * 25 23 22 47 47 H 1.08005 * 120.00014 * 359.97438 * 27 26 5 48 48 H 1.08001 * 119.99878 * 180.25475 * 28 27 26 49 49 H 1.07996 * 120.00451 * 179.77297 * 29 28 27 50 50 H 1.08002 * 119.99720 * 179.97438 * 30 29 28 51 51 H 1.08001 * 120.00011 * 0.02562 * 31 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7909 2.0242 1.3027 5 6 3.4397 1.4414 -0.3718 6 1 4.0357 0.9440 0.3933 7 6 3.8718 2.8803 -0.4885 8 8 3.0427 3.7517 -0.6450 9 7 5.1794 3.1991 -0.4189 10 6 5.5994 4.5981 -0.5319 11 1 4.8402 5.2618 -0.1178 12 6 5.9039 4.9599 -2.0009 13 7 7.0910 5.8273 -1.9997 14 6 7.6977 6.3512 -3.1099 15 1 7.3046 6.1356 -4.0925 16 6 8.8179 7.1593 -2.9725 17 7 9.2973 7.4215 -1.7751 18 14 9.6460 7.8733 -4.4871 19 1 9.0413 9.1914 -4.8068 20 1 11.0971 8.0455 -4.2230 21 1 9.4580 6.9507 -5.6354 22 6 7.5205 6.0400 -0.6050 23 6 6.9647 4.8198 0.1709 24 1 7.6123 3.9515 0.0492 25 8 6.7845 5.1311 1.5539 26 6 3.6405 0.7477 -1.6945 27 6 2.7799 1.0021 -2.7460 28 6 2.9669 0.3695 -3.9608 29 6 4.0086 -0.5250 -4.1211 30 6 4.8658 -0.7836 -3.0679 31 6 4.6819 -0.1471 -1.8547 32 1 -0.3634 -1.0233 -0.0943 33 1 -0.3634 0.4301 0.9333 34 1 -0.3633 0.5933 -0.8392 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 2.1630 3.0484 1.2753 38 1 0.7231 2.0311 1.5215 39 1 2.3171 1.4675 2.0781 40 1 5.8425 2.5024 -0.2934 41 1 6.1075 4.0536 -2.5712 42 1 5.0559 5.4888 -2.4358 43 1 10.0799 7.9865 -1.6790 44 1 7.0947 6.9641 -0.2141 45 1 8.6084 6.0661 -0.5422 46 1 7.6070 5.3257 2.0237 47 1 1.9633 1.6976 -2.6194 48 1 2.2970 0.5713 -4.7835 49 1 4.1526 -1.0220 -5.0691 50 1 5.6794 -1.4827 -3.1930 51 1 5.3514 -0.3494 -1.0318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197723052.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:18 Heat of formation + Delta-G solvation = -35.580564 kcal Electronic energy + Delta-G solvation = -31810.904280 eV Core-core repulsion = 27710.514611 eV Total energy + Delta-G solvation = -4100.389669 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.66336 -40.21951 -39.27874 -37.95195 -36.70036 -35.57627 -33.83343 -33.11821 -31.76120 -31.39884 -30.30116 -28.96478 -27.97068 -26.62082 -25.73038 -23.53166 -23.01201 -22.58410 -22.25003 -21.63249 -20.95157 -19.12209 -18.55564 -18.15211 -17.80324 -17.45809 -17.02854 -16.63008 -16.35907 -15.79069 -15.76192 -15.57613 -15.46997 -15.26523 -15.01855 -14.75679 -14.27676 -14.21884 -14.08000 -13.97007 -13.79492 -13.61138 -13.30052 -13.22675 -13.15334 -13.02239 -12.84551 -12.74356 -12.70333 -12.44951 -12.06454 -12.02269 -11.94795 -11.89920 -11.70102 -11.44939 -11.19850 -10.86793 -10.77912 -10.17786 -9.79474 -9.62034 -9.33412 -8.99133 -7.83234 -5.29648 0.34575 0.53188 1.46584 1.48606 1.57096 1.58322 1.90999 2.45805 2.76518 3.04333 3.06307 3.28409 3.58617 3.60828 3.70962 3.86421 3.93383 4.04205 4.08912 4.18326 4.18783 4.22964 4.32554 4.33073 4.40338 4.51367 4.55579 4.57424 4.63272 4.67690 4.74011 4.81265 4.89907 4.94925 5.01769 5.04472 5.10867 5.19038 5.35799 5.36696 5.42023 5.43566 5.55935 5.62413 5.65282 5.65765 5.91193 6.08261 6.11703 6.19404 6.52266 6.84494 7.03497 7.21590 7.67150 8.29550 9.18522 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012526 B = 0.003091 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.872391 B = 9056.951638 C =10437.902868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 N -0.532 5.532 4 C 0.024 3.976 5 C 0.121 3.879 6 H 0.090 0.910 7 C 0.521 3.479 8 O -0.558 6.558 9 N -0.702 5.702 10 C 0.159 3.841 11 H 0.076 0.924 12 C 0.135 3.865 13 N -0.617 5.617 14 C -0.245 4.245 15 H 0.079 0.921 16 C -0.059 4.059 17 N -0.946 5.946 18 Si 0.983 3.017 19 H -0.289 1.289 20 H -0.287 1.287 21 H -0.269 1.269 22 C 0.134 3.866 23 C 0.093 3.907 24 H 0.087 0.913 25 O -0.568 6.568 26 C -0.093 4.093 27 C -0.100 4.100 28 C -0.134 4.134 29 C -0.118 4.118 30 C -0.123 4.123 31 C -0.112 4.112 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.039 0.961 40 H 0.413 0.587 41 H 0.037 0.963 42 H 0.010 0.990 43 H 0.251 0.749 44 H -0.009 1.009 45 H 0.092 0.908 46 H 0.397 0.603 47 H 0.109 0.891 48 H 0.132 0.868 49 H 0.142 0.858 50 H 0.148 0.852 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.282 -22.250 4.676 24.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 N -0.258 5.258 4 C -0.124 4.124 5 C 0.010 3.990 6 H 0.108 0.892 7 C 0.307 3.693 8 O -0.435 6.435 9 N -0.354 5.354 10 C 0.053 3.947 11 H 0.094 0.906 12 C 0.008 3.992 13 N -0.345 5.345 14 C -0.373 4.373 15 H 0.097 0.903 16 C -0.252 4.252 17 N -0.595 5.595 18 Si 0.810 3.190 19 H -0.217 1.217 20 H -0.213 1.213 21 H -0.194 1.194 22 C 0.008 3.992 23 C 0.032 3.968 24 H 0.105 0.895 25 O -0.375 6.375 26 C -0.094 4.094 27 C -0.118 4.118 28 C -0.152 4.152 29 C -0.136 4.136 30 C -0.141 4.141 31 C -0.130 4.130 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.249 0.751 41 H 0.055 0.945 42 H 0.028 0.972 43 H 0.061 0.939 44 H 0.009 0.991 45 H 0.110 0.890 46 H 0.247 0.753 47 H 0.128 0.872 48 H 0.149 0.851 49 H 0.160 0.840 50 H 0.165 0.835 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.622 -21.350 4.034 24.641 hybrid contribution 1.548 0.658 -0.020 1.682 sum -10.074 -20.692 4.015 23.362 Atomic orbital electron populations 1.21725 0.93916 1.02244 1.02008 1.22194 0.96873 0.86895 1.01523 1.61692 1.14287 1.18889 1.30898 1.22438 1.02839 0.98921 0.88181 1.20370 0.91542 0.90693 0.96419 0.89212 1.20836 0.81924 0.91286 0.75206 1.90689 1.52571 1.51186 1.49093 1.45744 1.07867 1.08076 1.73685 1.21495 0.95773 0.83295 0.94139 0.90618 1.21620 0.89005 0.93742 0.94845 1.44537 1.29954 1.57088 1.02933 1.19425 1.07485 1.24209 0.86230 0.90331 1.25616 0.99136 1.00490 0.99993 1.69944 1.25791 1.42110 1.21616 0.85021 0.77255 0.78093 0.78585 1.21656 1.21325 1.19398 1.22396 1.01379 0.92613 0.82829 1.23247 0.94436 0.97730 0.81366 0.89531 1.86381 1.37895 1.92447 1.20796 1.19342 0.97627 0.98774 0.93685 1.21061 0.98881 0.98809 0.93078 1.21385 0.99158 0.97438 0.97188 1.21520 0.94576 0.97534 0.99958 1.21432 0.99840 1.00190 0.92647 1.21300 0.96812 0.95796 0.99120 0.90662 0.92562 0.93103 0.90498 0.93566 0.93171 0.89905 0.94269 0.75075 0.94457 0.97192 0.93921 0.99114 0.88983 0.75262 0.87236 0.85055 0.83981 0.83452 0.83665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.85 71.98 0.71 -1.48 16 2 C 0.05 0.90 5.37 86.30 0.46 1.37 16 3 N -0.53 -12.23 3.81 -905.91 -3.45 -15.68 16 4 C 0.02 0.54 9.03 127.69 1.15 1.69 16 5 C 0.12 2.80 2.08 43.42 0.09 2.89 16 6 H 0.09 1.62 7.94 -2.39 -0.02 1.60 16 7 C 0.52 16.33 6.12 87.66 0.54 16.86 16 8 O -0.56 -22.45 14.79 -3.05 -0.05 -22.50 16 9 N -0.70 -21.11 5.10 -436.91 -2.23 -23.34 16 10 C 0.16 6.13 3.06 46.18 0.14 6.27 16 11 H 0.08 3.34 7.55 -2.38 -0.02 3.33 16 12 C 0.13 6.09 6.99 86.73 0.61 6.70 16 13 N -0.62 -32.44 3.40 -691.87 -2.35 -34.79 16 14 C -0.24 -13.87 10.27 84.03 0.86 -13.01 16 15 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 16 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 17 N -0.95 -54.71 10.09 21.65 0.22 -54.49 16 18 Si 0.98 45.18 29.55 68.60 2.03 47.20 16 19 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 20 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 22 C 0.13 6.50 5.62 86.85 0.49 6.99 16 23 C 0.09 3.41 4.05 31.98 0.13 3.54 16 24 H 0.09 2.80 8.01 -2.39 -0.02 2.78 16 25 O -0.57 -18.65 13.47 -148.98 -2.01 -20.65 16 26 C -0.09 -2.05 3.30 -19.87 -0.07 -2.12 16 27 C -0.10 -2.45 8.50 22.27 0.19 -2.26 16 28 C -0.13 -2.78 10.05 22.27 0.22 -2.55 16 29 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 30 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 31 C -0.11 -1.95 9.67 22.27 0.22 -1.73 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.83 6.98 -2.39 -0.02 0.81 16 34 H 0.05 0.93 8.14 -2.38 -0.02 0.92 16 35 H 0.08 1.39 5.98 -2.39 -0.01 1.38 16 36 H 0.05 0.69 8.03 -2.39 -0.02 0.67 16 37 H 0.05 1.45 6.13 -2.39 -0.01 1.43 16 38 H 0.08 1.65 6.81 -2.39 -0.02 1.63 16 39 H 0.04 0.73 8.11 -2.39 -0.02 0.71 16 40 H 0.41 9.67 8.56 -92.71 -0.79 8.87 16 41 H 0.04 1.63 8.03 -2.39 -0.02 1.61 16 42 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16 43 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 44 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 45 H 0.09 4.87 5.88 -2.39 -0.01 4.86 16 46 H 0.40 9.65 9.12 -74.06 -0.68 8.97 16 47 H 0.11 3.14 7.90 -2.91 -0.02 3.11 16 48 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 49 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 50 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 51 H 0.15 1.76 7.99 -2.91 -0.02 1.73 16 Total: -1.00 -73.32 406.97 -1.70 -75.02 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: -0.53 Total: 32.51 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 6.66 Total: 16.71 kcal Atomic # 7 Polarization: -120.49 SS G_CDS: -7.81 Total: -128.30 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -2.05 Total: -43.15 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -73.32 -1.70 -75.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197723052.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.444 kcal (2) G-P(sol) polarization free energy of solvation -73.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds