Wall clock time and date at job start Wed Apr 1 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46899 * 109.46792 * 2 1 4 4 C 1.46900 * 111.00208 * 59.18303 * 3 2 1 5 5 C 1.52997 * 109.47176 * 66.04525 * 4 3 2 6 6 N 1.46501 * 109.47346 * 180.02562 * 5 4 3 7 7 C 1.34771 * 120.00167 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00035 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99840 * 179.97438 * 7 6 5 10 10 C 1.50700 * 109.46844 * 180.02562 * 9 7 6 11 11 C 1.38239 * 120.00180 * 90.00070 * 10 9 7 12 12 C 1.38233 * 119.99916 * 179.72240 * 11 10 9 13 13 C 1.38227 * 120.00378 * 0.25877 * 12 11 10 14 14 C 1.50698 * 120.00528 * 180.02562 * 13 12 11 15 15 C 1.38235 * 119.99942 * 0.02562 * 13 12 11 16 16 C 1.38235 * 120.00139 * 359.96031 * 15 13 12 17 17 C 1.46902 * 110.99962 * 295.22545 * 3 2 1 18 18 C 1.50696 * 109.47182 * 288.24047 * 17 3 2 19 19 O 1.21294 * 120.00147 * 354.30130 * 18 17 3 20 20 N 1.34782 * 120.00030 * 174.30143 * 18 17 3 21 21 C 1.37099 * 120.00298 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99302 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00033 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99858 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99951 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47036 * 89.99779 * 25 23 21 27 27 H 1.48497 * 109.46886 * 210.00030 * 25 23 21 28 28 H 1.48501 * 109.46980 * 330.00039 * 25 23 21 29 29 H 1.09002 * 109.46724 * 299.99000 * 1 2 3 30 30 H 1.09001 * 109.46601 * 59.99144 * 1 2 3 31 31 H 1.08997 * 109.46877 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47295 * 240.00026 * 2 1 3 33 33 H 1.08999 * 109.47078 * 119.99591 * 2 1 3 34 34 H 1.08998 * 109.47140 * 306.04418 * 4 3 2 35 35 H 1.09007 * 109.46758 * 186.04281 * 4 3 2 36 36 H 1.08998 * 109.47173 * 59.99914 * 5 4 3 37 37 H 1.09001 * 109.47012 * 300.00254 * 5 4 3 38 38 H 0.97004 * 119.99696 * 359.97438 * 6 5 4 39 39 H 1.08998 * 109.47198 * 60.00033 * 9 7 6 40 40 H 1.08998 * 109.47009 * 299.99843 * 9 7 6 41 41 H 1.07997 * 119.99652 * 0.02562 * 11 10 9 42 42 H 1.07998 * 119.99661 * 180.27885 * 12 11 10 43 43 H 1.09003 * 109.47339 * 89.99149 * 14 13 12 44 44 H 1.08998 * 109.47210 * 210.00370 * 14 13 12 45 45 H 1.09002 * 109.46515 * 329.99855 * 14 13 12 46 46 H 1.08005 * 120.00527 * 179.97438 * 15 13 12 47 47 H 1.08001 * 120.00397 * 180.02562 * 16 15 13 48 48 H 1.08997 * 109.46865 * 48.24633 * 17 3 2 49 49 H 1.09004 * 109.46995 * 168.24403 * 17 3 2 50 50 H 0.96997 * 119.99921 * 0.02562 * 20 18 17 51 51 H 0.97005 * 119.99725 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5327 2.1155 1.1778 5 6 2.1475 1.5122 2.4423 6 7 1.6614 2.2404 3.6169 7 6 2.0717 1.8817 4.8495 8 8 2.8430 0.9558 4.9864 9 6 1.5721 2.6311 6.0577 10 6 2.1775 2.0367 7.3032 11 6 3.3786 2.5210 7.7869 12 6 3.9310 1.9796 8.9325 13 6 3.2852 0.9504 9.5916 14 6 3.8871 0.3606 10.8410 15 6 2.0871 0.4622 9.1048 16 6 1.5344 1.0037 7.9592 17 6 1.6441 2.0761 -1.2407 18 6 2.4641 1.5368 -2.3842 19 8 3.3517 0.7383 -2.1703 20 7 2.2113 1.9419 -3.6446 21 6 2.9570 1.4509 -4.6850 22 1 3.7473 0.7398 -4.4945 23 6 2.6960 1.8681 -5.9844 24 7 1.7341 2.7328 -6.2161 25 14 3.7126 1.1996 -7.4019 26 1 3.0726 -0.0307 -7.9330 27 1 3.7927 2.2199 -8.4779 28 1 5.0805 0.8781 -6.9217 29 1 -0.3633 0.5137 0.8901 30 1 -0.3632 0.5140 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.4467 2.0388 1.2295 35 1 1.8196 3.1642 1.0990 36 1 3.2335 1.5889 2.3905 37 1 1.8607 0.4636 2.5209 38 1 1.0442 2.9807 3.5075 39 1 0.4860 2.5548 6.1092 40 1 1.8594 3.6796 5.9793 41 1 3.8829 3.3255 7.2723 42 1 4.8671 2.3610 9.3129 43 1 3.5213 0.9041 11.7121 44 1 3.6023 -0.6885 10.9211 45 1 4.9732 0.4396 10.7931 46 1 1.5826 -0.3422 9.6194 47 1 0.5981 0.6225 7.5790 48 1 0.5858 1.9107 -1.4426 49 1 1.8305 3.1446 -1.1321 50 1 1.5018 2.5808 -3.8156 51 1 1.5522 3.0244 -7.1232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267245683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:00 Heat of formation + Delta-G solvation = -48.354706 kcal Electronic energy + Delta-G solvation = -29077.544866 eV Core-core repulsion = 24976.601268 eV Total energy + Delta-G solvation = -4100.943597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.30956 -39.26070 -38.76154 -37.10019 -34.79532 -34.06691 -33.81706 -31.23808 -31.16709 -30.77300 -30.12615 -29.06961 -26.40921 -25.44767 -24.28697 -23.46313 -22.98749 -21.40026 -20.66691 -20.15862 -18.93201 -17.79752 -17.23006 -16.73620 -16.32045 -16.03846 -15.96333 -15.76160 -15.38972 -15.13753 -14.75597 -14.52689 -14.24454 -14.03870 -13.74754 -13.67633 -13.44166 -13.38338 -13.07152 -13.05211 -12.98462 -12.67329 -12.16359 -12.13867 -12.12319 -11.87403 -11.66288 -11.49666 -11.39989 -11.38626 -11.20624 -11.12361 -10.93423 -10.46075 -10.38001 -10.20225 -10.07126 -9.46452 -9.18401 -9.13435 -8.75300 -8.46335 -7.95016 -7.86189 -6.40202 -3.80727 1.04524 1.19164 2.48732 2.90795 3.18913 3.27464 3.33734 3.54506 3.93553 4.05895 4.27702 4.32303 4.48993 4.63474 4.69346 4.75515 4.79971 4.86917 5.00870 5.08904 5.09483 5.15058 5.22724 5.24220 5.26037 5.32053 5.39320 5.42243 5.45519 5.49218 5.60414 5.66623 5.81719 5.82287 5.83848 5.86985 5.94978 6.06489 6.14869 6.23239 6.28625 6.32085 6.32608 6.34772 6.51942 6.76409 7.20456 7.30437 7.34077 7.56850 8.07089 8.08460 8.64265 9.20501 9.56798 10.09236 10.77674 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028806 B = 0.001461 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.780982 B =19165.289508 C =19358.134974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 N -0.507 5.507 4 C 0.040 3.960 5 C 0.122 3.878 6 N -0.731 5.731 7 C 0.512 3.488 8 O -0.528 6.528 9 C -0.102 4.102 10 C -0.072 4.072 11 C -0.100 4.100 12 C -0.120 4.120 13 C -0.088 4.088 14 C -0.114 4.114 15 C -0.121 4.121 16 C -0.101 4.101 17 C 0.043 3.957 18 C 0.445 3.555 19 O -0.574 6.574 20 N -0.567 5.567 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.399 0.601 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.054 0.946 49 H 0.087 0.913 50 H 0.391 0.609 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.985 2.751 29.534 30.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.081 4.081 3 N -0.231 5.231 4 C -0.089 4.089 5 C -0.001 4.001 6 N -0.384 5.384 7 C 0.297 3.703 8 O -0.403 6.403 9 C -0.142 4.142 10 C -0.072 4.072 11 C -0.118 4.118 12 C -0.138 4.138 13 C -0.088 4.088 14 C -0.171 4.171 15 C -0.139 4.139 16 C -0.119 4.119 17 C -0.088 4.088 18 C 0.230 3.770 19 O -0.457 6.457 20 N -0.204 5.204 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.232 0.768 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.071 0.929 49 H 0.105 0.895 50 H 0.224 0.776 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.336 1.589 29.598 29.956 hybrid contribution -1.269 0.587 -1.171 1.824 sum -5.605 2.176 28.427 29.056 Atomic orbital electron populations 1.22461 0.98962 1.02305 1.01545 1.22269 0.91867 0.89888 1.04055 1.61663 1.59176 1.02052 1.00160 1.22286 0.97606 0.98583 0.90385 1.21319 1.00185 0.95955 0.82672 1.45962 1.49474 1.36736 1.06217 1.20506 0.81314 0.84423 0.84026 1.90760 1.34305 1.29191 1.86046 1.20673 1.02133 1.00650 0.90716 1.19242 0.95614 0.97098 0.95253 1.20964 0.94760 1.00034 0.96065 1.20977 0.99984 0.96933 0.95916 1.19920 0.95234 0.96464 0.97224 1.20792 1.00811 1.00711 0.94788 1.20972 0.95789 1.00329 0.96769 1.20949 0.99980 0.95608 0.95341 1.21920 0.98009 0.98807 0.90101 1.19737 0.87451 0.86329 0.83506 1.90526 1.34254 1.37042 1.83923 1.41866 1.32965 1.40691 1.04874 1.19698 1.14446 1.23693 0.84879 0.87943 1.25234 0.97235 0.96727 0.98722 1.69611 1.30716 1.32078 1.22093 0.85875 0.80072 0.78272 0.80183 1.20465 1.20961 1.19416 0.92896 0.92260 0.92120 0.88805 0.90914 0.93964 0.90388 0.90336 0.91270 0.76772 0.87987 0.87912 0.86192 0.86121 0.91268 0.91569 0.91550 0.86158 0.86273 0.92852 0.89481 0.77592 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 9.27 37.16 0.34 -2.13 16 2 C 0.05 0.73 5.52 -3.82 -0.02 0.71 16 3 N -0.51 -8.07 4.31 -236.07 -1.02 -9.08 16 4 C 0.04 0.46 4.81 -3.83 -0.02 0.44 16 5 C 0.12 1.44 5.60 -4.04 -0.02 1.42 16 6 N -0.73 -6.59 5.56 -60.30 -0.33 -6.92 16 7 C 0.51 5.48 7.82 -10.99 -0.09 5.40 16 8 O -0.53 -8.24 16.03 5.56 0.09 -8.15 16 9 C -0.10 -0.72 5.83 -29.03 -0.17 -0.89 16 10 C -0.07 -0.67 4.37 -104.62 -0.46 -1.12 16 11 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16 12 C -0.12 -1.06 9.70 -39.59 -0.38 -1.45 16 13 C -0.09 -0.76 5.88 -104.63 -0.62 -1.38 16 14 C -0.11 -0.69 10.01 36.00 0.36 -0.33 16 15 C -0.12 -1.06 9.70 -39.58 -0.38 -1.44 16 16 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 17 C 0.04 0.74 5.34 -4.98 -0.03 0.71 16 18 C 0.44 10.38 7.36 -10.99 -0.08 10.29 16 19 O -0.57 -15.52 14.70 5.55 0.08 -15.44 16 20 N -0.57 -14.23 5.29 -10.96 -0.06 -14.28 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 25 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 29 H 0.05 0.58 6.26 -51.93 -0.33 0.26 16 30 H 0.06 0.80 6.29 -51.93 -0.33 0.48 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.79 6.54 -51.93 -0.34 1.45 16 33 H 0.07 1.06 6.51 -51.93 -0.34 0.72 16 34 H 0.04 0.43 5.98 -51.93 -0.31 0.12 16 35 H 0.08 0.82 7.86 -51.92 -0.41 0.41 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.07 0.90 6.57 -51.93 -0.34 0.56 16 38 H 0.40 2.26 8.47 -40.82 -0.35 1.92 16 39 H 0.10 0.48 8.09 -51.93 -0.42 0.06 16 40 H 0.10 0.50 8.08 -51.93 -0.42 0.08 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 45 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 46 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 47 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 48 H 0.05 0.83 5.97 -51.93 -0.31 0.52 16 49 H 0.09 1.34 7.81 -51.93 -0.41 0.93 16 50 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 51 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 416.24 15.07 6.27 6.27 Total: -1.00 -34.94 416.24 -9.76 -44.70 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -7.92 Total: 10.89 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.57 Total: -0.31 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.69 Total: -54.03 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.17 Total: -23.59 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.94 -9.76 -44.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267245683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.654 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds