Wall clock time and date at job start Wed Apr 1 2020 05:42:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 N 1.46899 * 109.46792 * 2 1
4 4 C 1.46900 * 111.00208 * 59.18303 * 3 2 1
5 5 C 1.52997 * 109.47176 * 66.04525 * 4 3 2
6 6 N 1.46501 * 109.47346 * 180.02562 * 5 4 3
7 7 C 1.34771 * 120.00167 * 179.97438 * 6 5 4
8 8 O 1.21282 * 120.00035 * 359.97438 * 7 6 5
9 9 C 1.50701 * 119.99840 * 179.97438 * 7 6 5
10 10 C 1.50700 * 109.46844 * 180.02562 * 9 7 6
11 11 C 1.38239 * 120.00180 * 90.00070 * 10 9 7
12 12 C 1.38233 * 119.99916 * 179.72240 * 11 10 9
13 13 C 1.38227 * 120.00378 * 0.25877 * 12 11 10
14 14 C 1.50698 * 120.00528 * 180.02562 * 13 12 11
15 15 C 1.38235 * 119.99942 * 0.02562 * 13 12 11
16 16 C 1.38235 * 120.00139 * 359.96031 * 15 13 12
17 17 C 1.46902 * 110.99962 * 295.22545 * 3 2 1
18 18 C 1.50696 * 109.47182 * 288.24047 * 17 3 2
19 19 O 1.21294 * 120.00147 * 354.30130 * 18 17 3
20 20 N 1.34782 * 120.00030 * 174.30143 * 18 17 3
21 21 C 1.37099 * 120.00298 * 180.02562 * 20 18 17
22 22 H 1.08002 * 119.99302 * 359.97438 * 21 20 18
23 23 C 1.38945 * 120.00033 * 179.97438 * 21 20 18
24 24 N 1.31408 * 119.99858 * 359.97438 * 23 21 20
25 25 Si 1.86806 * 119.99951 * 179.97438 * 23 21 20
26 26 H 1.48498 * 109.47036 * 89.99779 * 25 23 21
27 27 H 1.48497 * 109.46886 * 210.00030 * 25 23 21
28 28 H 1.48501 * 109.46980 * 330.00039 * 25 23 21
29 29 H 1.09002 * 109.46724 * 299.99000 * 1 2 3
30 30 H 1.09001 * 109.46601 * 59.99144 * 1 2 3
31 31 H 1.08997 * 109.46877 * 179.97438 * 1 2 3
32 32 H 1.08993 * 109.47295 * 240.00026 * 2 1 3
33 33 H 1.08999 * 109.47078 * 119.99591 * 2 1 3
34 34 H 1.08998 * 109.47140 * 306.04418 * 4 3 2
35 35 H 1.09007 * 109.46758 * 186.04281 * 4 3 2
36 36 H 1.08998 * 109.47173 * 59.99914 * 5 4 3
37 37 H 1.09001 * 109.47012 * 300.00254 * 5 4 3
38 38 H 0.97004 * 119.99696 * 359.97438 * 6 5 4
39 39 H 1.08998 * 109.47198 * 60.00033 * 9 7 6
40 40 H 1.08998 * 109.47009 * 299.99843 * 9 7 6
41 41 H 1.07997 * 119.99652 * 0.02562 * 11 10 9
42 42 H 1.07998 * 119.99661 * 180.27885 * 12 11 10
43 43 H 1.09003 * 109.47339 * 89.99149 * 14 13 12
44 44 H 1.08998 * 109.47210 * 210.00370 * 14 13 12
45 45 H 1.09002 * 109.46515 * 329.99855 * 14 13 12
46 46 H 1.08005 * 120.00527 * 179.97438 * 15 13 12
47 47 H 1.08001 * 120.00397 * 180.02562 * 16 15 13
48 48 H 1.08997 * 109.46865 * 48.24633 * 17 3 2
49 49 H 1.09004 * 109.46995 * 168.24403 * 17 3 2
50 50 H 0.96997 * 119.99921 * 0.02562 * 20 18 17
51 51 H 0.97005 * 119.99725 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.5327 2.1155 1.1778
5 6 2.1475 1.5122 2.4423
6 7 1.6614 2.2404 3.6169
7 6 2.0717 1.8817 4.8495
8 8 2.8430 0.9558 4.9864
9 6 1.5721 2.6311 6.0577
10 6 2.1775 2.0367 7.3032
11 6 3.3786 2.5210 7.7869
12 6 3.9310 1.9796 8.9325
13 6 3.2852 0.9504 9.5916
14 6 3.8871 0.3606 10.8410
15 6 2.0871 0.4622 9.1048
16 6 1.5344 1.0037 7.9592
17 6 1.6441 2.0761 -1.2407
18 6 2.4641 1.5368 -2.3842
19 8 3.3517 0.7383 -2.1703
20 7 2.2113 1.9419 -3.6446
21 6 2.9570 1.4509 -4.6850
22 1 3.7473 0.7398 -4.4945
23 6 2.6960 1.8681 -5.9844
24 7 1.7341 2.7328 -6.2161
25 14 3.7126 1.1996 -7.4019
26 1 3.0726 -0.0307 -7.9330
27 1 3.7927 2.2199 -8.4779
28 1 5.0805 0.8781 -6.9217
29 1 -0.3633 0.5137 0.8901
30 1 -0.3632 0.5140 -0.8899
31 1 -0.3633 -1.0277 -0.0005
32 1 1.8934 -0.5138 -0.8899
33 1 1.8934 -0.5138 0.8900
34 1 0.4467 2.0388 1.2295
35 1 1.8196 3.1642 1.0990
36 1 3.2335 1.5889 2.3905
37 1 1.8607 0.4636 2.5209
38 1 1.0442 2.9807 3.5075
39 1 0.4860 2.5548 6.1092
40 1 1.8594 3.6796 5.9793
41 1 3.8829 3.3255 7.2723
42 1 4.8671 2.3610 9.3129
43 1 3.5213 0.9041 11.7121
44 1 3.6023 -0.6885 10.9211
45 1 4.9732 0.4396 10.7931
46 1 1.5826 -0.3422 9.6194
47 1 0.5981 0.6225 7.5790
48 1 0.5858 1.9107 -1.4426
49 1 1.8305 3.1446 -1.1321
50 1 1.5018 2.5808 -3.8156
51 1 1.5522 3.0244 -7.1232
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001267245683.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:42:00
Heat of formation + Delta-G solvation = -48.354706 kcal
Electronic energy + Delta-G solvation = -29077.544866 eV
Core-core repulsion = 24976.601268 eV
Total energy + Delta-G solvation = -4100.943597 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-40.30956 -39.26070 -38.76154 -37.10019 -34.79532 -34.06691 -33.81706 -31.23808
-31.16709 -30.77300 -30.12615 -29.06961 -26.40921 -25.44767 -24.28697 -23.46313
-22.98749 -21.40026 -20.66691 -20.15862 -18.93201 -17.79752 -17.23006 -16.73620
-16.32045 -16.03846 -15.96333 -15.76160 -15.38972 -15.13753 -14.75597 -14.52689
-14.24454 -14.03870 -13.74754 -13.67633 -13.44166 -13.38338 -13.07152 -13.05211
-12.98462 -12.67329 -12.16359 -12.13867 -12.12319 -11.87403 -11.66288 -11.49666
-11.39989 -11.38626 -11.20624 -11.12361 -10.93423 -10.46075 -10.38001 -10.20225
-10.07126 -9.46452 -9.18401 -9.13435 -8.75300 -8.46335 -7.95016 -7.86189
-6.40202 -3.80727 1.04524 1.19164 2.48732 2.90795 3.18913 3.27464
3.33734 3.54506 3.93553 4.05895 4.27702 4.32303 4.48993 4.63474
4.69346 4.75515 4.79971 4.86917 5.00870 5.08904 5.09483 5.15058
5.22724 5.24220 5.26037 5.32053 5.39320 5.42243 5.45519 5.49218
5.60414 5.66623 5.81719 5.82287 5.83848 5.86985 5.94978 6.06489
6.14869 6.23239 6.28625 6.32085 6.32608 6.34772 6.51942 6.76409
7.20456 7.30437 7.34077 7.56850 8.07089 8.08460 8.64265 9.20501
9.56798 10.09236 10.77674
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.028806 B = 0.001461 C = 0.001446
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 971.780982 B =19165.289508 C =19358.134974
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.047 3.953
3 N -0.507 5.507
4 C 0.040 3.960
5 C 0.122 3.878
6 N -0.731 5.731
7 C 0.512 3.488
8 O -0.528 6.528
9 C -0.102 4.102
10 C -0.072 4.072
11 C -0.100 4.100
12 C -0.120 4.120
13 C -0.088 4.088
14 C -0.114 4.114
15 C -0.121 4.121
16 C -0.101 4.101
17 C 0.043 3.957
18 C 0.445 3.555
19 O -0.574 6.574
20 N -0.567 5.567
21 C -0.298 4.298
22 H 0.103 0.897
23 C 0.022 3.978
24 N -0.903 5.903
25 Si 0.929 3.071
26 H -0.279 1.279
27 H -0.284 1.284
28 H -0.270 1.270
29 H 0.052 0.948
30 H 0.058 0.942
31 H 0.060 0.940
32 H 0.094 0.906
33 H 0.072 0.928
34 H 0.042 0.958
35 H 0.078 0.922
36 H 0.078 0.922
37 H 0.069 0.931
38 H 0.399 0.601
39 H 0.102 0.898
40 H 0.103 0.897
41 H 0.120 0.880
42 H 0.121 0.879
43 H 0.069 0.931
44 H 0.065 0.935
45 H 0.066 0.934
46 H 0.120 0.880
47 H 0.119 0.881
48 H 0.054 0.946
49 H 0.087 0.913
50 H 0.391 0.609
51 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.985 2.751 29.534 30.260
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.253 4.253
2 C -0.081 4.081
3 N -0.231 5.231
4 C -0.089 4.089
5 C -0.001 4.001
6 N -0.384 5.384
7 C 0.297 3.703
8 O -0.403 6.403
9 C -0.142 4.142
10 C -0.072 4.072
11 C -0.118 4.118
12 C -0.138 4.138
13 C -0.088 4.088
14 C -0.171 4.171
15 C -0.139 4.139
16 C -0.119 4.119
17 C -0.088 4.088
18 C 0.230 3.770
19 O -0.457 6.457
20 N -0.204 5.204
21 C -0.427 4.427
22 H 0.121 0.879
23 C -0.179 4.179
24 N -0.545 5.545
25 Si 0.756 3.244
26 H -0.205 1.205
27 H -0.210 1.210
28 H -0.194 1.194
29 H 0.071 0.929
30 H 0.077 0.923
31 H 0.079 0.921
32 H 0.112 0.888
33 H 0.091 0.909
34 H 0.060 0.940
35 H 0.096 0.904
36 H 0.097 0.903
37 H 0.087 0.913
38 H 0.232 0.768
39 H 0.120 0.880
40 H 0.121 0.879
41 H 0.138 0.862
42 H 0.139 0.861
43 H 0.087 0.913
44 H 0.084 0.916
45 H 0.085 0.915
46 H 0.138 0.862
47 H 0.137 0.863
48 H 0.071 0.929
49 H 0.105 0.895
50 H 0.224 0.776
51 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -4.336 1.589 29.598 29.956
hybrid contribution -1.269 0.587 -1.171 1.824
sum -5.605 2.176 28.427 29.056
Atomic orbital electron populations
1.22461 0.98962 1.02305 1.01545 1.22269 0.91867 0.89888 1.04055
1.61663 1.59176 1.02052 1.00160 1.22286 0.97606 0.98583 0.90385
1.21319 1.00185 0.95955 0.82672 1.45962 1.49474 1.36736 1.06217
1.20506 0.81314 0.84423 0.84026 1.90760 1.34305 1.29191 1.86046
1.20673 1.02133 1.00650 0.90716 1.19242 0.95614 0.97098 0.95253
1.20964 0.94760 1.00034 0.96065 1.20977 0.99984 0.96933 0.95916
1.19920 0.95234 0.96464 0.97224 1.20792 1.00811 1.00711 0.94788
1.20972 0.95789 1.00329 0.96769 1.20949 0.99980 0.95608 0.95341
1.21920 0.98009 0.98807 0.90101 1.19737 0.87451 0.86329 0.83506
1.90526 1.34254 1.37042 1.83923 1.41866 1.32965 1.40691 1.04874
1.19698 1.14446 1.23693 0.84879 0.87943 1.25234 0.97235 0.96727
0.98722 1.69611 1.30716 1.32078 1.22093 0.85875 0.80072 0.78272
0.80183 1.20465 1.20961 1.19416 0.92896 0.92260 0.92120 0.88805
0.90914 0.93964 0.90388 0.90336 0.91270 0.76772 0.87987 0.87912
0.86192 0.86121 0.91268 0.91569 0.91550 0.86158 0.86273 0.92852
0.89481 0.77592 0.91950
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.47 9.27 37.16 0.34 -2.13 16
2 C 0.05 0.73 5.52 -3.82 -0.02 0.71 16
3 N -0.51 -8.07 4.31 -236.07 -1.02 -9.08 16
4 C 0.04 0.46 4.81 -3.83 -0.02 0.44 16
5 C 0.12 1.44 5.60 -4.04 -0.02 1.42 16
6 N -0.73 -6.59 5.56 -60.30 -0.33 -6.92 16
7 C 0.51 5.48 7.82 -10.99 -0.09 5.40 16
8 O -0.53 -8.24 16.03 5.56 0.09 -8.15 16
9 C -0.10 -0.72 5.83 -29.03 -0.17 -0.89 16
10 C -0.07 -0.67 4.37 -104.62 -0.46 -1.12 16
11 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16
12 C -0.12 -1.06 9.70 -39.59 -0.38 -1.45 16
13 C -0.09 -0.76 5.88 -104.63 -0.62 -1.38 16
14 C -0.11 -0.69 10.01 36.00 0.36 -0.33 16
15 C -0.12 -1.06 9.70 -39.58 -0.38 -1.44 16
16 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16
17 C 0.04 0.74 5.34 -4.98 -0.03 0.71 16
18 C 0.44 10.38 7.36 -10.99 -0.08 10.29 16
19 O -0.57 -15.52 14.70 5.55 0.08 -15.44 16
20 N -0.57 -14.23 5.29 -10.96 -0.06 -14.28 16
21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16
22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16
23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16
24 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16
25 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16
26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
28 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16
29 H 0.05 0.58 6.26 -51.93 -0.33 0.26 16
30 H 0.06 0.80 6.29 -51.93 -0.33 0.48 16
31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
32 H 0.09 1.79 6.54 -51.93 -0.34 1.45 16
33 H 0.07 1.06 6.51 -51.93 -0.34 0.72 16
34 H 0.04 0.43 5.98 -51.93 -0.31 0.12 16
35 H 0.08 0.82 7.86 -51.92 -0.41 0.41 16
36 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16
37 H 0.07 0.90 6.57 -51.93 -0.34 0.56 16
38 H 0.40 2.26 8.47 -40.82 -0.35 1.92 16
39 H 0.10 0.48 8.09 -51.93 -0.42 0.06 16
40 H 0.10 0.50 8.08 -51.93 -0.42 0.08 16
41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16
42 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16
43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
44 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16
45 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16
46 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16
47 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16
48 H 0.05 0.83 5.97 -51.93 -0.31 0.52 16
49 H 0.09 1.34 7.81 -51.93 -0.41 0.93 16
50 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16
51 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16
LS Contribution 416.24 15.07 6.27 6.27
Total: -1.00 -34.94 416.24 -9.76 -44.70
By element:
Atomic # 1 Polarization: 18.82 SS G_CDS: -7.92 Total: 10.89 kcal
Atomic # 6 Polarization: 2.26 SS G_CDS: -2.57 Total: -0.31 kcal
Atomic # 7 Polarization: -53.34 SS G_CDS: -0.69 Total: -54.03 kcal
Atomic # 8 Polarization: -23.76 SS G_CDS: 0.17 Total: -23.59 kcal
Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal
Total LS contribution 6.27 Total: 6.27 kcal
Total: -34.94 -9.76 -44.70 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267245683.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.654 kcal
(2) G-P(sol) polarization free energy of solvation -34.942 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.596 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.701 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.355 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds