Wall clock time and date at job start Wed Apr 1 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46978 * 2 1 4 4 C 1.34774 * 119.99673 * 90.00403 * 3 2 1 5 5 O 1.21280 * 119.99906 * 174.98038 * 4 3 2 6 6 C 1.50701 * 120.00348 * 354.97799 * 4 3 2 7 7 C 1.53002 * 109.47351 * 180.02562 * 6 4 3 8 8 C 1.52993 * 109.47139 * 179.97438 * 7 6 4 9 9 O 1.42904 * 109.46990 * 179.97438 * 8 7 6 10 10 C 1.35918 * 116.99595 * 179.97438 * 9 8 7 11 11 C 1.39137 * 120.46951 * 180.02562 * 10 9 8 12 12 C 1.38531 * 118.37409 * 179.72579 * 11 10 9 13 13 C 1.38249 * 119.22247 * 0.02562 * 12 11 10 14 14 N 1.31848 * 120.88464 * 0.02562 * 13 12 11 15 15 C 1.31835 * 121.78340 * 359.96284 * 14 13 12 16 16 C 1.46497 * 119.99977 * 269.99929 * 3 2 1 17 17 H 1.09002 * 110.64093 * 178.17391 * 16 3 2 18 18 C 1.55156 * 110.72137 * 54.84284 * 16 3 2 19 19 C 1.54917 * 101.57689 * 277.13775 * 18 16 3 20 20 N 1.47429 * 104.83198 * 322.98620 * 19 18 16 21 21 C 1.36935 * 125.65049 * 204.09485 * 20 19 18 22 22 H 1.07993 * 120.00169 * 180.02562 * 21 20 19 23 23 C 1.38817 * 119.99788 * 0.04334 * 21 20 19 24 24 N 1.31620 * 119.99981 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99707 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47416 * 90.00167 * 25 23 21 27 27 H 1.48502 * 109.46990 * 209.99949 * 25 23 21 28 28 H 1.48498 * 109.47227 * 329.99654 * 25 23 21 29 29 C 1.47023 * 108.69993 * 24.13091 * 20 19 18 30 30 H 1.08995 * 109.47273 * 60.00150 * 1 2 3 31 31 H 1.08999 * 109.46845 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46569 * 299.99737 * 1 2 3 33 33 H 1.09003 * 109.47012 * 240.00074 * 2 1 3 34 34 H 1.09000 * 109.47694 * 120.00000 * 2 1 3 35 35 H 1.08993 * 109.47390 * 60.00033 * 6 4 3 36 36 H 1.09004 * 109.46688 * 299.99807 * 6 4 3 37 37 H 1.08993 * 109.47249 * 59.99453 * 7 6 4 38 38 H 1.09008 * 109.46607 * 299.99819 * 7 6 4 39 39 H 1.09001 * 109.47207 * 59.99998 * 8 7 6 40 40 H 1.09000 * 109.47516 * 299.99776 * 8 7 6 41 41 H 1.08000 * 120.81370 * 359.74596 * 11 10 9 42 42 H 1.08005 * 120.38843 * 180.02562 * 12 11 10 43 43 H 1.08002 * 119.56105 * 180.02562 * 13 12 11 44 44 H 1.08000 * 119.65985 * 180.02562 * 15 14 13 45 45 H 1.08999 * 111.00507 * 35.20431 * 18 16 3 46 46 H 1.08993 * 111.00759 * 159.06161 * 18 16 3 47 47 H 1.09003 * 110.36325 * 204.15087 * 19 18 16 48 48 H 1.08992 * 110.46342 * 81.87204 * 19 18 16 49 49 H 0.97001 * 119.99470 * 180.02562 * 24 23 21 50 50 H 1.09000 * 109.88253 * 239.51925 * 29 20 19 51 51 H 1.09008 * 110.00871 * 118.42939 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0165 1.1672 5 8 2.7327 3.1260 1.1693 6 6 1.8856 1.3482 2.4698 7 6 2.2393 2.2768 3.6333 8 6 1.8759 1.5986 4.9557 9 8 2.2068 2.4656 6.0424 10 6 1.9449 2.0110 7.2962 11 6 2.2378 2.7961 8.4069 12 6 1.9476 2.2923 9.6643 13 6 1.3816 1.0357 9.7738 14 7 1.1174 0.3166 8.7007 15 6 1.3779 0.7595 7.4866 16 6 2.2625 2.0718 -1.2687 17 1 2.5901 3.0963 -1.0917 18 6 0.9941 2.0438 -2.1620 19 6 1.1102 0.6475 -2.8230 20 7 2.5532 0.4616 -3.0611 21 6 3.1068 -0.3617 -4.0051 22 1 4.1804 -0.4285 -4.1006 23 6 2.2878 -1.1100 -4.8395 24 7 0.9793 -1.0279 -4.7237 25 14 3.0429 -2.2335 -6.1267 26 1 3.2590 -3.5813 -5.5419 27 1 2.1260 -2.3399 -7.2900 28 1 4.3438 -1.6725 -6.5716 29 6 3.2995 1.3057 -2.1167 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.4436 0.4168 2.5654 36 1 0.8168 1.1350 2.4875 37 1 1.6811 3.2080 3.5376 38 1 3.3081 2.4904 3.6157 39 1 2.4339 0.6671 5.0517 40 1 0.8071 1.3853 4.9730 41 1 2.6802 3.7746 8.2916 42 1 2.1611 2.8743 10.5487 43 1 1.1528 0.6377 10.7513 44 1 1.1469 0.1417 6.6314 45 1 0.0894 2.1162 -1.5583 46 1 1.0263 2.8347 -2.9112 47 1 0.5644 0.6279 -3.7663 48 1 0.7340 -0.1243 -2.1517 49 1 0.4071 -1.5511 -5.3066 50 1 3.9247 2.0111 -2.6641 51 1 3.9201 0.6843 -1.4710 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267794953.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:18 Heat of formation + Delta-G solvation = -2.006642 kcal Electronic energy + Delta-G solvation = -30341.479023 eV Core-core repulsion = 26242.545229 eV Total energy + Delta-G solvation = -4098.933795 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.97275 -40.15886 -38.61260 -37.64954 -34.81569 -34.15613 -32.69078 -32.21974 -30.62267 -30.54359 -29.35280 -27.88418 -26.70292 -24.63553 -24.26808 -23.50797 -22.94087 -22.02147 -20.41123 -20.18382 -18.79725 -18.35737 -17.42211 -17.06374 -16.99683 -16.80423 -16.75324 -15.79306 -15.46775 -14.87161 -14.73906 -14.35386 -14.29974 -14.01686 -13.80386 -13.62034 -13.42351 -13.23585 -13.09312 -12.64634 -12.58108 -12.30372 -12.16034 -11.96156 -11.87984 -11.66905 -11.61811 -11.42755 -11.10450 -11.06745 -10.90294 -10.87325 -10.45837 -10.29572 -10.14935 -10.12808 -9.89297 -9.84602 -9.59067 -9.44595 -8.85350 -8.68573 -8.31463 -6.88377 -5.70942 -3.12476 0.70009 0.88625 2.60183 2.78126 3.28446 3.36144 3.39994 3.42077 3.43422 4.08392 4.24699 4.39148 4.44736 4.50180 4.55540 4.62133 4.73534 4.84977 4.99310 5.03467 5.10229 5.12693 5.17999 5.35719 5.39075 5.44120 5.47507 5.55738 5.60262 5.67616 5.67772 5.72264 5.82424 5.87094 5.97435 6.02519 6.12165 6.14187 6.28295 6.37614 6.43012 6.58672 6.62971 6.71027 6.85298 7.02677 7.44299 7.54803 7.58054 7.71385 7.80341 8.30483 8.37468 9.16779 9.77167 10.41558 11.32442 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024049 B = 0.001772 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.012382 B =15798.070493 C =16246.054786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.094 3.906 3 N -0.589 5.589 4 C 0.514 3.486 5 O -0.551 6.551 6 C -0.137 4.137 7 C -0.102 4.102 8 C 0.056 3.944 9 O -0.306 6.306 10 C 0.084 3.916 11 C -0.112 4.112 12 C -0.132 4.132 13 C 0.055 3.945 14 N -0.451 5.451 15 C 0.015 3.985 16 C 0.126 3.874 17 H 0.098 0.902 18 C -0.158 4.158 19 C 0.139 3.861 20 N -0.602 5.602 21 C -0.222 4.222 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.921 5.921 25 Si 0.914 3.086 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.127 3.873 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.157 0.843 44 H 0.159 0.841 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.032 0.968 49 H 0.252 0.748 50 H 0.031 0.969 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.756 4.695 24.572 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.029 4.029 3 N -0.321 5.321 4 C 0.302 3.698 5 O -0.429 6.429 6 C -0.177 4.177 7 C -0.140 4.140 8 C -0.019 4.019 9 O -0.218 6.218 10 C 0.036 3.964 11 C -0.138 4.138 12 C -0.152 4.152 13 C -0.103 4.103 14 N -0.160 5.160 15 C -0.143 4.143 16 C 0.022 3.978 17 H 0.116 0.884 18 C -0.197 4.197 19 C 0.014 3.986 20 N -0.329 5.329 21 C -0.350 4.350 22 H 0.094 0.906 23 C -0.205 4.205 24 N -0.570 5.570 25 Si 0.744 3.256 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.000 4.000 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.175 0.825 44 H 0.176 0.824 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.122 0.878 48 H 0.049 0.951 49 H 0.062 0.938 50 H 0.049 0.951 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.835 4.489 24.382 24.860 hybrid contribution 0.633 -0.117 -0.818 1.041 sum -1.203 4.372 23.564 23.996 Atomic orbital electron populations 1.22439 0.95945 1.02456 1.02534 1.21841 0.94607 0.82166 1.04263 1.47946 1.64380 1.14313 1.05467 1.20411 0.78159 0.85936 0.85326 1.90674 1.44452 1.20360 1.87433 1.21587 1.03836 0.99997 0.92315 1.21230 1.04199 0.99195 0.89387 1.22967 1.00512 0.93239 0.85175 1.86102 1.79387 1.44559 1.11768 1.20108 0.96241 0.94139 0.85864 1.20997 1.01770 1.00868 0.90188 1.22037 0.98582 0.97092 0.97462 1.22679 0.98206 0.91892 0.97495 1.67531 1.14726 1.35228 0.98497 1.22981 1.01149 0.93979 0.96172 1.22125 0.96993 0.96405 0.82255 0.88366 1.23434 0.95919 1.02087 0.98298 1.22283 0.86074 0.89331 1.00874 1.44537 1.01530 1.49160 1.37695 1.19068 0.91499 1.16055 1.08414 0.90560 1.24762 0.95516 1.00397 0.99857 1.69793 1.01789 1.44261 1.41154 0.86087 0.77935 0.80517 0.81035 1.21687 1.21678 1.20752 1.21627 0.93528 0.93371 0.91433 0.90334 0.91687 0.93551 0.87183 0.91541 0.88640 0.88516 0.89905 0.89875 0.91494 0.91498 0.83932 0.84058 0.82534 0.82391 0.91738 0.91190 0.87837 0.95053 0.93754 0.95074 0.95624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 9.06 37.16 0.34 -1.94 16 2 C 0.09 1.35 4.98 -4.04 -0.02 1.33 16 3 N -0.59 -9.18 2.45 -164.03 -0.40 -9.58 16 4 C 0.51 7.57 7.66 -10.99 -0.08 7.48 16 5 O -0.55 -9.93 15.37 5.56 0.09 -9.85 16 6 C -0.14 -1.37 4.37 -27.88 -0.12 -1.49 16 7 C -0.10 -1.00 4.87 -26.73 -0.13 -1.13 16 8 C 0.06 0.45 4.75 37.15 0.18 0.62 16 9 O -0.31 -3.05 10.15 -19.48 -0.20 -3.24 16 10 C 0.08 0.79 6.71 -39.08 -0.26 0.53 16 11 C -0.11 -0.88 10.13 -39.14 -0.40 -1.28 16 12 C -0.13 -0.85 10.11 -39.47 -0.40 -1.25 16 13 C 0.05 0.42 11.18 -17.54 -0.20 0.22 16 14 N -0.45 -4.50 10.35 -13.13 -0.14 -4.63 16 15 C 0.02 0.14 10.22 -17.38 -0.18 -0.04 16 16 C 0.13 2.26 3.58 -66.10 -0.24 2.02 16 17 H 0.10 1.80 7.01 -51.93 -0.36 1.43 16 18 C -0.16 -2.90 6.09 -24.58 -0.15 -3.05 16 19 C 0.14 3.08 4.64 -2.52 -0.01 3.07 16 20 N -0.60 -14.51 2.97 -170.06 -0.51 -15.02 16 21 C -0.22 -5.93 10.27 -15.06 -0.15 -6.08 16 22 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 23 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 24 N -0.92 -25.51 10.09 55.49 0.56 -24.95 16 25 Si 0.91 21.45 29.55 -169.99 -5.02 16.42 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 C 0.13 2.62 6.25 -3.07 -0.02 2.61 16 30 H 0.08 1.18 4.34 -51.93 -0.23 0.96 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.50 6.94 -51.93 -0.36 0.14 16 33 H 0.11 2.01 5.19 -51.93 -0.27 1.74 16 34 H 0.07 0.76 6.48 -51.93 -0.34 0.43 16 35 H 0.10 0.79 7.25 -51.93 -0.38 0.42 16 36 H 0.10 0.80 6.94 -51.93 -0.36 0.44 16 37 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.08 0.92 8.10 -51.92 -0.42 0.50 16 39 H 0.07 0.45 7.69 -51.93 -0.40 0.05 16 40 H 0.07 0.44 7.67 -51.93 -0.40 0.04 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 43 H 0.16 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.16 1.17 6.32 -52.49 -0.33 0.84 16 45 H 0.06 1.07 6.45 -51.93 -0.33 0.74 16 46 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 47 H 0.10 2.68 5.87 -51.93 -0.30 2.38 16 48 H 0.03 0.69 4.04 -51.93 -0.21 0.48 16 49 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 50 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.03 0.54 8.04 -51.92 -0.42 0.12 16 LS Contribution 393.77 15.07 5.93 5.93 Total: -1.00 -31.84 393.77 -9.24 -41.08 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.61 Total: 2.59 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.94 Total: 1.26 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.48 Total: -54.18 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.11 Total: -13.09 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.84 -9.24 -41.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267794953.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.069 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds