Wall clock time and date at job start Wed Apr 1 2020 06:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46978 * 2 1 4 4 C 1.34774 * 119.99673 * 90.00403 * 3 2 1 5 5 O 1.21280 * 119.99906 * 174.98038 * 4 3 2 6 6 C 1.50701 * 120.00348 * 354.97799 * 4 3 2 7 7 C 1.53002 * 109.47351 * 180.02562 * 6 4 3 8 8 C 1.52993 * 109.47139 * 179.97438 * 7 6 4 9 9 O 1.42904 * 109.46990 * 179.97438 * 8 7 6 10 10 C 1.35918 * 116.99595 * 179.97438 * 9 8 7 11 11 C 1.39137 * 120.46951 * 180.02562 * 10 9 8 12 12 C 1.38531 * 118.37409 * 179.72579 * 11 10 9 13 13 C 1.38249 * 119.22247 * 0.02562 * 12 11 10 14 14 N 1.31848 * 120.88464 * 0.02562 * 13 12 11 15 15 C 1.31835 * 121.78340 * 359.96284 * 14 13 12 16 16 C 1.46497 * 119.99977 * 269.99929 * 3 2 1 17 17 H 1.09002 * 110.64093 * 178.17391 * 16 3 2 18 18 C 1.55156 * 110.72137 * 54.84284 * 16 3 2 19 19 C 1.54917 * 101.57689 * 277.13775 * 18 16 3 20 20 N 1.47429 * 104.83198 * 322.98620 * 19 18 16 21 21 C 1.36935 * 125.65049 * 204.09485 * 20 19 18 22 22 H 1.07993 * 120.00169 * 180.02562 * 21 20 19 23 23 C 1.38817 * 119.99788 * 0.04334 * 21 20 19 24 24 N 1.31620 * 119.99981 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99707 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47416 * 90.00167 * 25 23 21 27 27 H 1.48502 * 109.46990 * 209.99949 * 25 23 21 28 28 H 1.48498 * 109.47227 * 329.99654 * 25 23 21 29 29 C 1.47023 * 108.69993 * 24.13091 * 20 19 18 30 30 H 1.08995 * 109.47273 * 60.00150 * 1 2 3 31 31 H 1.08999 * 109.46845 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46569 * 299.99737 * 1 2 3 33 33 H 1.09003 * 109.47012 * 240.00074 * 2 1 3 34 34 H 1.09000 * 109.47694 * 120.00000 * 2 1 3 35 35 H 1.08993 * 109.47390 * 60.00033 * 6 4 3 36 36 H 1.09004 * 109.46688 * 299.99807 * 6 4 3 37 37 H 1.08993 * 109.47249 * 59.99453 * 7 6 4 38 38 H 1.09008 * 109.46607 * 299.99819 * 7 6 4 39 39 H 1.09001 * 109.47207 * 59.99998 * 8 7 6 40 40 H 1.09000 * 109.47516 * 299.99776 * 8 7 6 41 41 H 1.08000 * 120.81370 * 359.74596 * 11 10 9 42 42 H 1.08005 * 120.38843 * 180.02562 * 12 11 10 43 43 H 1.08002 * 119.56105 * 180.02562 * 13 12 11 44 44 H 1.08000 * 119.65985 * 180.02562 * 15 14 13 45 45 H 1.08999 * 111.00507 * 35.20431 * 18 16 3 46 46 H 1.08993 * 111.00759 * 159.06161 * 18 16 3 47 47 H 1.09003 * 110.36325 * 204.15087 * 19 18 16 48 48 H 1.08992 * 110.46342 * 81.87204 * 19 18 16 49 49 H 0.97001 * 119.99470 * 180.02562 * 24 23 21 50 50 H 1.09000 * 109.88253 * 239.51925 * 29 20 19 51 51 H 1.09008 * 110.00871 * 118.42939 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0165 1.1672 5 8 2.7327 3.1260 1.1693 6 6 1.8856 1.3482 2.4698 7 6 2.2393 2.2768 3.6333 8 6 1.8759 1.5986 4.9557 9 8 2.2068 2.4656 6.0424 10 6 1.9449 2.0110 7.2962 11 6 2.2378 2.7961 8.4069 12 6 1.9476 2.2923 9.6643 13 6 1.3816 1.0357 9.7738 14 7 1.1174 0.3166 8.7007 15 6 1.3779 0.7595 7.4866 16 6 2.2625 2.0718 -1.2687 17 1 2.5901 3.0963 -1.0917 18 6 0.9941 2.0438 -2.1620 19 6 1.1102 0.6475 -2.8230 20 7 2.5532 0.4616 -3.0611 21 6 3.1068 -0.3617 -4.0051 22 1 4.1804 -0.4285 -4.1006 23 6 2.2878 -1.1100 -4.8395 24 7 0.9793 -1.0279 -4.7237 25 14 3.0429 -2.2335 -6.1267 26 1 3.2590 -3.5813 -5.5419 27 1 2.1260 -2.3399 -7.2900 28 1 4.3438 -1.6725 -6.5716 29 6 3.2995 1.3057 -2.1167 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.4436 0.4168 2.5654 36 1 0.8168 1.1350 2.4875 37 1 1.6811 3.2080 3.5376 38 1 3.3081 2.4904 3.6157 39 1 2.4339 0.6671 5.0517 40 1 0.8071 1.3853 4.9730 41 1 2.6802 3.7746 8.2916 42 1 2.1611 2.8743 10.5487 43 1 1.1528 0.6377 10.7513 44 1 1.1469 0.1417 6.6314 45 1 0.0894 2.1162 -1.5583 46 1 1.0263 2.8347 -2.9112 47 1 0.5644 0.6279 -3.7663 48 1 0.7340 -0.1243 -2.1517 49 1 0.4071 -1.5511 -5.3066 50 1 3.9247 2.0111 -2.6641 51 1 3.9201 0.6843 -1.4710 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267794953.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:17 Heat of formation + Delta-G solvation = -20.632897 kcal Electronic energy + Delta-G solvation = -30342.286718 eV Core-core repulsion = 26242.545229 eV Total energy + Delta-G solvation = -4099.741490 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.60018 -41.39213 -39.36640 -38.99597 -36.28270 -35.04823 -34.02028 -33.21361 -31.83531 -31.28733 -31.02244 -29.00280 -28.01204 -26.42567 -24.98183 -24.26590 -23.93519 -22.85551 -22.02735 -21.58711 -19.86434 -19.18432 -18.92425 -18.47835 -17.69781 -17.49102 -17.47464 -17.03503 -16.70429 -16.43969 -15.66507 -15.60034 -15.33999 -15.17294 -14.88340 -14.58571 -14.30419 -14.29530 -14.00783 -13.96053 -13.68403 -13.45530 -13.38481 -13.23312 -12.98572 -12.93832 -12.86948 -12.72078 -12.59517 -12.33238 -12.16224 -12.02811 -11.98306 -11.79778 -11.71226 -11.55546 -11.38912 -10.75592 -10.67468 -10.63403 -10.43239 -9.63608 -9.45264 -8.83908 -7.74692 -5.17886 0.15268 0.30178 1.48358 1.49145 1.57604 1.63686 1.84686 2.23562 2.50779 2.83070 3.35132 3.46384 3.58033 3.69004 3.73461 3.87938 3.91241 3.94013 3.99296 4.05779 4.09327 4.11835 4.24444 4.32984 4.36030 4.38365 4.49503 4.54931 4.59250 4.65859 4.67232 4.70897 4.73185 4.86796 4.95605 4.99433 5.01253 5.04277 5.07069 5.15840 5.22311 5.24126 5.46530 5.49481 5.59905 5.65881 5.74504 5.86780 6.25452 6.35171 6.52608 6.97764 7.14428 7.19417 7.80152 8.43948 9.25925 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024049 B = 0.001772 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.012382 B =15798.070493 C =16246.054786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.096 3.904 3 N -0.592 5.592 4 C 0.510 3.490 5 O -0.588 6.588 6 C -0.127 4.127 7 C -0.095 4.095 8 C 0.057 3.943 9 O -0.325 6.325 10 C 0.068 3.932 11 C -0.124 4.124 12 C -0.124 4.124 13 C 0.046 3.954 14 N -0.480 5.480 15 C 0.003 3.997 16 C 0.138 3.862 17 H 0.096 0.904 18 C -0.143 4.143 19 C 0.146 3.854 20 N -0.618 5.618 21 C -0.237 4.237 22 H 0.074 0.926 23 C -0.059 4.059 24 N -0.941 5.941 25 Si 0.975 3.025 26 H -0.286 1.286 27 H -0.294 1.294 28 H -0.276 1.276 29 C 0.129 3.871 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.153 0.847 42 H 0.174 0.826 43 H 0.181 0.819 44 H 0.171 0.829 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.035 0.965 49 H 0.247 0.753 50 H 0.025 0.975 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 4.185 27.117 27.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.026 4.026 3 N -0.323 5.323 4 C 0.301 3.699 5 O -0.469 6.469 6 C -0.167 4.167 7 C -0.134 4.134 8 C -0.017 4.017 9 O -0.238 6.238 10 C 0.020 3.980 11 C -0.150 4.150 12 C -0.143 4.143 13 C -0.111 4.111 14 N -0.190 5.190 15 C -0.154 4.154 16 C 0.033 3.967 17 H 0.114 0.886 18 C -0.182 4.182 19 C 0.022 3.978 20 N -0.345 5.345 21 C -0.366 4.366 22 H 0.092 0.908 23 C -0.252 4.252 24 N -0.591 5.591 25 Si 0.804 3.196 26 H -0.213 1.213 27 H -0.221 1.221 28 H -0.201 1.201 29 C 0.002 3.998 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.171 0.829 42 H 0.192 0.808 43 H 0.198 0.802 44 H 0.188 0.812 45 H 0.104 0.896 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.053 0.947 49 H 0.057 0.943 50 H 0.043 0.957 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -2.170 3.976 26.949 27.327 hybrid contribution 0.782 0.087 -1.535 1.725 sum -1.388 4.063 25.414 25.774 Atomic orbital electron populations 1.22365 0.94669 1.03110 1.02684 1.21849 0.95595 0.81154 1.03980 1.47989 1.64617 1.14805 1.04873 1.21243 0.76893 0.85501 0.86274 1.90663 1.46017 1.22230 1.87961 1.21613 1.05819 1.00207 0.89029 1.21105 1.02758 0.98845 0.90649 1.22987 1.01868 0.93143 0.83705 1.86061 1.79882 1.45435 1.12381 1.20284 0.97120 0.94668 0.85898 1.21340 1.01737 1.01381 0.90544 1.22385 0.97077 0.96800 0.98036 1.23198 0.97647 0.92294 0.97979 1.67547 1.15868 1.36330 0.99250 1.23174 1.01451 0.94239 0.96552 1.21807 0.95615 0.96092 0.83188 0.88561 1.23274 0.97184 0.99482 0.98291 1.22081 0.84744 0.91638 0.99310 1.44730 1.02700 1.49191 1.37886 1.19343 0.91654 1.16524 1.09112 0.90825 1.25483 0.96031 1.01936 1.01726 1.70028 1.02602 1.44765 1.41668 0.85138 0.77203 0.78775 0.78528 1.21315 1.22067 1.20124 1.21673 0.94054 0.92893 0.91164 0.92793 0.90825 0.90663 0.91309 0.87946 0.86115 0.85774 0.91505 0.91737 0.89890 0.89696 0.82902 0.80816 0.80166 0.81212 0.89565 0.91553 0.91677 0.94727 0.94330 0.95748 0.95891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 9.06 71.98 0.65 -3.34 16 2 C 0.10 2.57 4.98 86.38 0.43 3.00 16 3 N -0.59 -17.56 2.45 -791.26 -1.94 -19.50 16 4 C 0.51 14.11 7.66 87.66 0.67 14.78 16 5 O -0.59 -20.84 15.37 -3.03 -0.05 -20.88 16 6 C -0.13 -2.12 4.37 29.85 0.13 -1.99 16 7 C -0.10 -1.71 4.87 30.59 0.15 -1.56 16 8 C 0.06 0.78 4.75 71.98 0.34 1.12 16 9 O -0.32 -6.07 10.15 -92.63 -0.94 -7.01 16 10 C 0.07 1.18 6.71 22.60 0.15 1.34 16 11 C -0.12 -1.75 10.13 22.56 0.23 -1.53 16 12 C -0.12 -1.29 10.11 22.34 0.23 -1.06 16 13 C 0.05 0.61 11.18 84.69 0.95 1.55 16 14 N -0.48 -8.88 10.35 -195.45 -2.02 -10.90 16 15 C 0.00 0.05 10.22 84.80 0.87 0.92 16 16 C 0.14 4.91 3.58 46.18 0.17 5.07 16 17 H 0.10 3.52 7.01 -2.39 -0.02 3.50 16 18 C -0.14 -5.24 6.09 31.99 0.19 -5.04 16 19 C 0.15 6.64 4.64 86.86 0.40 7.04 16 20 N -0.62 -30.46 2.97 -691.96 -2.06 -32.52 16 21 C -0.24 -12.92 10.27 84.04 0.86 -12.06 16 22 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 23 C -0.06 -3.20 5.49 84.86 0.47 -2.74 16 24 N -0.94 -53.28 10.09 21.65 0.22 -53.06 16 25 Si 0.97 44.57 29.55 68.60 2.03 46.60 16 26 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 27 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 28 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 29 C 0.13 5.39 6.25 86.73 0.54 5.93 16 30 H 0.05 1.54 4.34 -2.39 -0.01 1.53 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 1.32 6.94 -2.39 -0.02 1.31 16 33 H 0.07 2.48 5.19 -2.39 -0.01 2.47 16 34 H 0.10 1.98 6.48 -2.39 -0.02 1.97 16 35 H 0.12 1.48 7.25 -2.39 -0.02 1.46 16 36 H 0.12 1.46 6.94 -2.39 -0.02 1.45 16 37 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 38 H 0.06 1.39 8.10 -2.38 -0.02 1.37 16 39 H 0.08 0.87 7.69 -2.39 -0.02 0.85 16 40 H 0.08 0.86 7.67 -2.39 -0.02 0.84 16 41 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.17 0.57 8.06 -2.91 -0.02 0.54 16 43 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 44 H 0.17 2.20 6.32 -2.91 -0.02 2.18 16 45 H 0.09 2.78 6.45 -2.39 -0.02 2.76 16 46 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 47 H 0.07 3.49 5.87 -2.39 -0.01 3.48 16 48 H 0.04 1.55 4.04 -2.39 -0.01 1.55 16 49 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 50 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.02 0.98 8.04 -2.38 -0.02 0.96 16 Total: -1.00 -71.56 393.77 3.61 -67.95 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.94 Total: 17.89 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 7.43 Total: 11.44 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -5.80 Total: -115.98 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.99 Total: -27.90 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -71.56 3.61 -67.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267794953.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.320 kcal (2) G-P(sol) polarization free energy of solvation -71.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds