Wall clock time and date at job start Wed Apr 1 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46963 * 2 1 4 4 C 1.34766 * 120.00077 * 90.00183 * 3 2 1 5 5 O 1.21286 * 120.00473 * 174.97652 * 4 3 2 6 6 C 1.50704 * 120.00076 * 354.97749 * 4 3 2 7 7 C 1.53002 * 109.47209 * 180.02562 * 6 4 3 8 8 C 1.50694 * 109.47208 * 179.97438 * 7 6 4 9 9 C 1.38835 * 120.35201 * 269.97906 * 8 7 6 10 10 C 1.38383 * 118.48085 * 179.76923 * 9 8 7 11 11 C 1.38921 * 119.11284 * 0.49299 * 10 9 8 12 12 O 1.35673 * 119.68250 * 179.76908 * 11 10 9 13 13 C 1.42898 * 116.99914 * 179.72272 * 12 11 10 14 14 N 1.32246 * 120.63007 * 359.49320 * 11 10 9 15 15 C 1.31969 * 121.64764 * 0.25856 * 14 11 10 16 16 C 1.46500 * 119.99723 * 269.99922 * 3 2 1 17 17 H 1.08999 * 110.63881 * 178.17853 * 16 3 2 18 18 C 1.55152 * 110.72266 * 54.83651 * 16 3 2 19 19 C 1.54906 * 101.58622 * 277.13677 * 18 16 3 20 20 N 1.47421 * 104.83127 * 322.99192 * 19 18 16 21 21 C 1.36946 * 125.65058 * 204.09193 * 20 19 18 22 22 H 1.07994 * 119.99972 * 180.02562 * 21 20 19 23 23 C 1.38813 * 119.99526 * 0.03686 * 21 20 19 24 24 N 1.31616 * 120.00165 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99687 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46977 * 60.00452 * 25 23 21 27 27 H 1.48501 * 109.47253 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47186 * 300.00221 * 25 23 21 29 29 C 1.47027 * 108.70437 * 24.12600 * 20 19 18 30 30 H 1.09000 * 109.47211 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47343 * 300.00465 * 1 2 3 32 32 H 1.09000 * 109.47115 * 59.99953 * 1 2 3 33 33 H 1.09001 * 109.46908 * 240.00170 * 2 1 3 34 34 H 1.09000 * 109.47115 * 120.00046 * 2 1 3 35 35 H 1.08994 * 109.47084 * 59.99696 * 6 4 3 36 36 H 1.08998 * 109.47106 * 299.99830 * 6 4 3 37 37 H 1.09005 * 109.47062 * 59.99623 * 7 6 4 38 38 H 1.08998 * 109.46801 * 299.99837 * 7 6 4 39 39 H 1.07993 * 120.75833 * 0.02562 * 9 8 7 40 40 H 1.08003 * 120.44021 * 180.24030 * 10 9 8 41 41 H 1.09004 * 109.47107 * 60.00439 * 13 12 11 42 42 H 1.08998 * 109.47344 * 180.02562 * 13 12 11 43 43 H 1.08999 * 109.47513 * 300.00336 * 13 12 11 44 44 H 1.07998 * 119.58316 * 179.97438 * 15 14 11 45 45 H 1.09001 * 110.99988 * 35.21643 * 18 16 3 46 46 H 1.09001 * 111.00429 * 159.06095 * 18 16 3 47 47 H 1.08991 * 110.36839 * 204.15178 * 19 18 16 48 48 H 1.08999 * 110.45870 * 81.87370 * 19 18 16 49 49 H 0.97001 * 120.00199 * 179.97438 * 24 23 21 50 50 H 1.08998 * 109.87995 * 239.52332 * 29 20 19 51 51 H 1.08996 * 110.01424 * 118.43568 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0165 1.1671 5 8 2.7327 3.1261 1.1692 6 6 1.8855 1.3483 2.4698 7 6 2.2392 2.2769 3.6332 8 6 1.8812 1.6090 4.9357 9 6 0.6198 1.7817 5.4893 10 6 0.3309 1.1465 6.6843 11 6 1.3104 0.3706 7.2913 12 8 1.0412 -0.2535 8.4655 13 6 2.0878 -1.0416 9.0361 14 7 2.5009 0.2300 6.7328 15 6 2.8041 0.8191 5.5914 16 6 2.2624 2.0718 -1.2688 17 1 2.5902 3.0962 -1.0918 18 6 0.9942 2.0436 -2.1621 19 6 1.1103 0.6475 -2.8231 20 7 2.5532 0.4614 -3.0611 21 6 3.1068 -0.3619 -4.0051 22 1 4.1804 -0.4288 -4.1005 23 6 2.2878 -1.1102 -4.8395 24 7 0.9793 -1.0281 -4.7237 25 14 3.0429 -2.2327 -6.1275 26 1 3.8979 -3.2471 -5.4602 27 1 1.9625 -2.9156 -6.8837 28 1 3.8685 -1.4276 -7.0631 29 6 3.2996 1.3056 -2.1167 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.4434 0.4169 2.5653 36 1 0.8168 1.1351 2.4875 37 1 1.6809 3.2082 3.5373 38 1 3.3079 2.4905 3.6156 39 1 -0.1205 2.3944 4.9965 40 1 -0.6416 1.2560 7.1411 41 1 2.9533 -0.4089 9.2325 42 1 1.7415 -1.4842 9.9701 43 1 2.3668 -1.8334 8.3409 44 1 3.7869 0.6818 5.1652 45 1 0.0895 2.1161 -1.5584 46 1 1.0264 2.8345 -2.9114 47 1 0.5646 0.6278 -3.7664 48 1 0.7340 -0.1244 -2.1518 49 1 0.4070 -1.5508 -5.3070 50 1 3.9247 2.0109 -2.6641 51 1 3.9201 0.6843 -1.4710 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269339637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:04 Heat of formation + Delta-G solvation = -1.950629 kcal Electronic energy + Delta-G solvation = -30784.423725 eV Core-core repulsion = 26685.492359 eV Total energy + Delta-G solvation = -4098.931366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.95466 -40.08834 -38.39562 -37.58430 -34.77994 -34.33327 -32.54427 -32.21456 -30.52084 -30.00900 -29.16219 -27.64866 -26.92658 -25.04169 -24.43797 -23.72478 -22.91922 -21.90195 -20.35903 -20.15079 -18.69529 -18.47438 -17.43289 -17.24944 -17.01817 -16.29947 -15.91386 -15.55702 -15.09986 -14.77996 -14.72909 -14.56681 -14.26387 -13.90177 -13.79672 -13.64899 -13.36253 -13.21367 -12.99812 -12.56677 -12.34456 -12.20382 -12.15555 -11.99520 -11.76639 -11.65488 -11.48582 -11.35760 -11.27082 -11.07274 -10.88393 -10.86535 -10.43616 -10.28080 -10.17134 -10.13440 -9.89677 -9.87173 -9.57563 -9.41077 -8.66913 -8.63799 -8.28010 -6.86862 -5.69409 -3.10997 0.85374 0.97285 2.79756 2.82985 3.24297 3.37765 3.42606 3.43258 3.49687 4.02976 4.41788 4.46097 4.64367 4.68205 4.76410 4.91934 4.99535 4.99839 5.03524 5.05484 5.21521 5.30890 5.36929 5.38803 5.42051 5.47026 5.52421 5.60395 5.65084 5.68619 5.73785 5.78766 5.89247 5.95652 6.05559 6.11371 6.15182 6.18564 6.29982 6.39832 6.45501 6.60847 6.65061 6.73032 6.92328 7.05572 7.46134 7.55607 7.59018 7.75330 7.82039 8.32106 8.41802 9.18177 9.78632 10.43116 11.33895 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.002074 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.094041 B =13495.366623 C =14066.562064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 N -0.590 5.590 4 C 0.512 3.488 5 O -0.553 6.553 6 C -0.135 4.135 7 C -0.055 4.055 8 C -0.167 4.167 9 C -0.037 4.037 10 C -0.187 4.187 11 C 0.311 3.689 12 O -0.311 6.311 13 C 0.041 3.959 14 N -0.538 5.538 15 C 0.143 3.857 16 C 0.126 3.874 17 H 0.098 0.902 18 C -0.158 4.158 19 C 0.139 3.861 20 N -0.603 5.603 21 C -0.222 4.222 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.914 3.086 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.127 3.873 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.059 0.941 44 H 0.160 0.840 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.032 0.968 49 H 0.252 0.748 50 H 0.031 0.969 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.382 3.062 22.886 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.028 4.028 3 N -0.321 5.321 4 C 0.300 3.700 5 O -0.432 6.432 6 C -0.175 4.175 7 C -0.093 4.093 8 C -0.169 4.169 9 C -0.063 4.063 10 C -0.208 4.208 11 C 0.132 3.868 12 O -0.218 6.218 13 C -0.055 4.055 14 N -0.261 5.261 15 C -0.012 4.012 16 C 0.022 3.978 17 H 0.116 0.884 18 C -0.197 4.197 19 C 0.014 3.986 20 N -0.329 5.329 21 C -0.350 4.350 22 H 0.094 0.906 23 C -0.205 4.205 24 N -0.570 5.570 25 Si 0.744 3.256 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.000 4.000 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.077 0.923 44 H 0.177 0.823 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.121 0.879 48 H 0.049 0.951 49 H 0.063 0.937 50 H 0.049 0.951 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.804 2.942 23.305 23.559 hybrid contribution -0.029 -0.418 -1.057 1.137 sum -1.833 2.524 22.248 22.466 Atomic orbital electron populations 1.22432 0.96002 1.02399 1.02480 1.21822 0.94571 0.82202 1.04196 1.47956 1.64368 1.14290 1.05501 1.20574 0.78012 0.85932 0.85436 1.90660 1.44629 1.20411 1.87501 1.21731 1.03679 1.00053 0.92008 1.20195 1.03323 0.97557 0.88257 1.20796 0.95139 1.01777 0.99187 1.21377 0.95995 0.95675 0.93203 1.21069 1.00411 1.01598 0.97696 1.19862 0.89727 0.90810 0.86363 1.86227 1.40902 1.61600 1.33067 1.22848 0.90137 0.94522 0.97955 1.67327 1.19412 1.25749 1.13636 1.22354 0.99263 0.90847 0.88784 1.22116 0.96936 0.96396 0.82327 0.88378 1.23430 0.95952 1.02059 0.98297 1.22276 0.86066 0.89351 1.00857 1.44532 1.01536 1.49176 1.37682 1.19020 0.91457 1.16110 1.08461 0.90620 1.24762 0.95521 1.00402 0.99864 1.69780 1.01779 1.44359 1.41110 0.86165 0.77715 0.80358 0.81319 1.21266 1.21612 1.21213 1.21627 0.93543 0.93360 0.91431 0.91776 0.93563 0.90360 0.87254 0.91578 0.88958 0.88842 0.89980 0.89881 0.83995 0.84151 0.92331 0.88700 0.92255 0.82308 0.91756 0.91227 0.87859 0.95066 0.93709 0.95110 0.95628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 9.06 37.16 0.34 -2.01 16 2 C 0.09 1.40 4.98 -4.04 -0.02 1.38 16 3 N -0.59 -9.28 2.45 -164.03 -0.40 -9.68 16 4 C 0.51 7.54 7.66 -10.99 -0.08 7.46 16 5 O -0.55 -9.78 15.37 5.55 0.09 -9.70 16 6 C -0.13 -1.42 4.35 -27.88 -0.12 -1.54 16 7 C -0.05 -0.53 4.66 -27.88 -0.13 -0.66 16 8 C -0.17 -1.50 5.15 -104.48 -0.54 -2.04 16 9 C -0.04 -0.31 9.85 -39.31 -0.39 -0.69 16 10 C -0.19 -1.67 10.04 -39.28 -0.39 -2.07 16 11 C 0.31 3.30 7.49 -17.12 -0.13 3.17 16 12 O -0.31 -3.12 10.48 -18.72 -0.20 -3.32 16 13 C 0.04 0.30 10.38 101.05 1.05 1.34 16 14 N -0.54 -5.86 9.22 -13.33 -0.12 -5.98 16 15 C 0.14 1.37 10.85 -17.56 -0.19 1.18 16 16 C 0.13 2.26 3.58 -66.10 -0.24 2.03 16 17 H 0.10 1.79 7.01 -51.93 -0.36 1.43 16 18 C -0.16 -2.91 6.09 -24.59 -0.15 -3.06 16 19 C 0.14 3.10 4.64 -2.53 -0.01 3.09 16 20 N -0.60 -14.59 2.97 -170.08 -0.51 -15.10 16 21 C -0.22 -5.96 10.27 -15.06 -0.15 -6.11 16 22 H 0.08 1.99 7.83 -52.49 -0.41 1.57 16 23 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 24 N -0.92 -25.64 10.09 55.49 0.56 -25.08 16 25 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 29 C 0.13 2.63 6.25 -3.06 -0.02 2.62 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.53 6.94 -51.93 -0.36 0.17 16 32 H 0.08 1.20 4.34 -51.93 -0.23 0.97 16 33 H 0.11 2.04 5.18 -51.93 -0.27 1.77 16 34 H 0.07 0.81 6.48 -51.93 -0.34 0.48 16 35 H 0.09 0.88 7.25 -51.93 -0.38 0.51 16 36 H 0.09 0.88 6.94 -51.93 -0.36 0.52 16 37 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 38 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 41 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 42 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 44 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.06 1.07 6.45 -51.93 -0.33 0.74 16 46 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.10 2.69 5.87 -51.93 -0.30 2.38 16 48 H 0.03 0.70 4.04 -51.93 -0.21 0.49 16 49 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 50 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.03 0.54 8.04 -51.93 -0.42 0.12 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -31.20 395.96 -8.66 -39.86 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.74 Total: 2.82 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -1.28 Total: 3.71 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.47 Total: -55.84 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.11 Total: -13.01 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.20 -8.66 -39.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269339637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.905 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds