Wall clock time and date at job start Wed Apr 1 2020 06:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46963 * 2 1 4 4 C 1.34766 * 120.00077 * 90.00183 * 3 2 1 5 5 O 1.21286 * 120.00473 * 174.97652 * 4 3 2 6 6 C 1.50704 * 120.00076 * 354.97749 * 4 3 2 7 7 C 1.53002 * 109.47209 * 180.02562 * 6 4 3 8 8 C 1.50694 * 109.47208 * 179.97438 * 7 6 4 9 9 C 1.38835 * 120.35201 * 269.97906 * 8 7 6 10 10 C 1.38383 * 118.48085 * 179.76923 * 9 8 7 11 11 C 1.38921 * 119.11284 * 0.49299 * 10 9 8 12 12 O 1.35673 * 119.68250 * 179.76908 * 11 10 9 13 13 C 1.42898 * 116.99914 * 179.72272 * 12 11 10 14 14 N 1.32246 * 120.63007 * 359.49320 * 11 10 9 15 15 C 1.31969 * 121.64764 * 0.25856 * 14 11 10 16 16 C 1.46500 * 119.99723 * 269.99922 * 3 2 1 17 17 H 1.08999 * 110.63881 * 178.17853 * 16 3 2 18 18 C 1.55152 * 110.72266 * 54.83651 * 16 3 2 19 19 C 1.54906 * 101.58622 * 277.13677 * 18 16 3 20 20 N 1.47421 * 104.83127 * 322.99192 * 19 18 16 21 21 C 1.36946 * 125.65058 * 204.09193 * 20 19 18 22 22 H 1.07994 * 119.99972 * 180.02562 * 21 20 19 23 23 C 1.38813 * 119.99526 * 0.03686 * 21 20 19 24 24 N 1.31616 * 120.00165 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99687 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46977 * 60.00452 * 25 23 21 27 27 H 1.48501 * 109.47253 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47186 * 300.00221 * 25 23 21 29 29 C 1.47027 * 108.70437 * 24.12600 * 20 19 18 30 30 H 1.09000 * 109.47211 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47343 * 300.00465 * 1 2 3 32 32 H 1.09000 * 109.47115 * 59.99953 * 1 2 3 33 33 H 1.09001 * 109.46908 * 240.00170 * 2 1 3 34 34 H 1.09000 * 109.47115 * 120.00046 * 2 1 3 35 35 H 1.08994 * 109.47084 * 59.99696 * 6 4 3 36 36 H 1.08998 * 109.47106 * 299.99830 * 6 4 3 37 37 H 1.09005 * 109.47062 * 59.99623 * 7 6 4 38 38 H 1.08998 * 109.46801 * 299.99837 * 7 6 4 39 39 H 1.07993 * 120.75833 * 0.02562 * 9 8 7 40 40 H 1.08003 * 120.44021 * 180.24030 * 10 9 8 41 41 H 1.09004 * 109.47107 * 60.00439 * 13 12 11 42 42 H 1.08998 * 109.47344 * 180.02562 * 13 12 11 43 43 H 1.08999 * 109.47513 * 300.00336 * 13 12 11 44 44 H 1.07998 * 119.58316 * 179.97438 * 15 14 11 45 45 H 1.09001 * 110.99988 * 35.21643 * 18 16 3 46 46 H 1.09001 * 111.00429 * 159.06095 * 18 16 3 47 47 H 1.08991 * 110.36839 * 204.15178 * 19 18 16 48 48 H 1.08999 * 110.45870 * 81.87370 * 19 18 16 49 49 H 0.97001 * 120.00199 * 179.97438 * 24 23 21 50 50 H 1.08998 * 109.87995 * 239.52332 * 29 20 19 51 51 H 1.08996 * 110.01424 * 118.43568 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0165 1.1671 5 8 2.7327 3.1261 1.1692 6 6 1.8855 1.3483 2.4698 7 6 2.2392 2.2769 3.6332 8 6 1.8812 1.6090 4.9357 9 6 0.6198 1.7817 5.4893 10 6 0.3309 1.1465 6.6843 11 6 1.3104 0.3706 7.2913 12 8 1.0412 -0.2535 8.4655 13 6 2.0878 -1.0416 9.0361 14 7 2.5009 0.2300 6.7328 15 6 2.8041 0.8191 5.5914 16 6 2.2624 2.0718 -1.2688 17 1 2.5902 3.0962 -1.0918 18 6 0.9942 2.0436 -2.1621 19 6 1.1103 0.6475 -2.8231 20 7 2.5532 0.4614 -3.0611 21 6 3.1068 -0.3619 -4.0051 22 1 4.1804 -0.4288 -4.1005 23 6 2.2878 -1.1102 -4.8395 24 7 0.9793 -1.0281 -4.7237 25 14 3.0429 -2.2327 -6.1275 26 1 3.8979 -3.2471 -5.4602 27 1 1.9625 -2.9156 -6.8837 28 1 3.8685 -1.4276 -7.0631 29 6 3.2996 1.3056 -2.1167 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.4434 0.4169 2.5653 36 1 0.8168 1.1351 2.4875 37 1 1.6809 3.2082 3.5373 38 1 3.3079 2.4905 3.6156 39 1 -0.1205 2.3944 4.9965 40 1 -0.6416 1.2560 7.1411 41 1 2.9533 -0.4089 9.2325 42 1 1.7415 -1.4842 9.9701 43 1 2.3668 -1.8334 8.3409 44 1 3.7869 0.6818 5.1652 45 1 0.0895 2.1161 -1.5584 46 1 1.0264 2.8345 -2.9114 47 1 0.5646 0.6278 -3.7664 48 1 0.7340 -0.1244 -2.1518 49 1 0.4070 -1.5508 -5.3070 50 1 3.9247 2.0109 -2.6641 51 1 3.9201 0.6843 -1.4710 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269339637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:02 Heat of formation + Delta-G solvation = -20.719978 kcal Electronic energy + Delta-G solvation = -30785.237625 eV Core-core repulsion = 26685.492359 eV Total energy + Delta-G solvation = -4099.745266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.68742 -41.31838 -39.28337 -38.85149 -36.25734 -35.19561 -34.07448 -33.13119 -31.83808 -31.23533 -30.50545 -28.64294 -28.12433 -26.54265 -25.67149 -24.39802 -24.07316 -22.78293 -22.01522 -21.55033 -19.74291 -19.35334 -18.91655 -18.46940 -18.10150 -17.24806 -16.94744 -16.70488 -16.54818 -15.95445 -15.59620 -15.57443 -15.39666 -15.27898 -14.95029 -14.52910 -14.33627 -14.25680 -14.00284 -13.96531 -13.67613 -13.41317 -13.35625 -13.13761 -12.94986 -12.88267 -12.83484 -12.66987 -12.50360 -12.29614 -12.08402 -12.03975 -11.99298 -11.91824 -11.74310 -11.57484 -11.37456 -10.84394 -10.70786 -10.62599 -10.55415 -9.60831 -9.34072 -8.82876 -7.73767 -5.16988 0.17079 0.30885 1.48693 1.50366 1.56696 1.67916 2.04627 2.18593 2.51460 2.77940 3.35724 3.37015 3.50397 3.74223 3.90051 3.96590 3.98446 4.03321 4.08836 4.11214 4.23170 4.28219 4.32438 4.39823 4.43450 4.46964 4.49237 4.60847 4.67747 4.72083 4.73938 4.76676 4.77450 4.88336 4.94940 4.99376 5.01096 5.03664 5.05951 5.22237 5.25255 5.41874 5.45619 5.49874 5.52941 5.67736 5.75736 5.87909 6.25569 6.36205 6.55604 6.86512 7.15240 7.23115 7.81265 8.44945 9.26612 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.002074 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.094041 B =13495.366623 C =14066.562064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 N -0.592 5.592 4 C 0.512 3.488 5 O -0.583 6.583 6 C -0.126 4.126 7 C -0.046 4.046 8 C -0.165 4.165 9 C -0.033 4.033 10 C -0.191 4.191 11 C 0.291 3.709 12 O -0.323 6.323 13 C 0.038 3.962 14 N -0.557 5.557 15 C 0.133 3.867 16 C 0.139 3.861 17 H 0.099 0.901 18 C -0.143 4.143 19 C 0.146 3.854 20 N -0.619 5.619 21 C -0.237 4.237 22 H 0.074 0.926 23 C -0.060 4.060 24 N -0.941 5.941 25 Si 0.975 3.025 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.282 1.282 29 C 0.128 3.872 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.166 0.834 40 H 0.157 0.843 41 H 0.054 0.946 42 H 0.121 0.879 43 H 0.053 0.947 44 H 0.171 0.829 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.033 0.967 49 H 0.247 0.753 50 H 0.026 0.974 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.973 3.043 24.591 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.024 4.024 3 N -0.324 5.324 4 C 0.303 3.697 5 O -0.464 6.464 6 C -0.165 4.165 7 C -0.084 4.084 8 C -0.167 4.167 9 C -0.059 4.059 10 C -0.211 4.211 11 C 0.113 3.887 12 O -0.231 6.231 13 C -0.057 4.057 14 N -0.281 5.281 15 C -0.023 4.023 16 C 0.034 3.966 17 H 0.117 0.883 18 C -0.182 4.182 19 C 0.022 3.978 20 N -0.346 5.346 21 C -0.366 4.366 22 H 0.092 0.908 23 C -0.253 4.253 24 N -0.591 5.591 25 Si 0.804 3.196 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.209 1.209 29 C 0.002 3.998 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.184 0.816 40 H 0.175 0.825 41 H 0.073 0.927 42 H 0.139 0.861 43 H 0.072 0.928 44 H 0.188 0.812 45 H 0.104 0.896 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.051 0.949 49 H 0.057 0.943 50 H 0.044 0.956 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.386 2.925 25.038 25.321 hybrid contribution 0.203 -0.397 -1.541 1.604 sum -2.184 2.528 23.498 23.734 Atomic orbital electron populations 1.22352 0.94732 1.02942 1.02687 1.21782 0.95540 0.81403 1.03627 1.47993 1.64691 1.14649 1.05033 1.21279 0.76815 0.85515 0.86119 1.90653 1.45890 1.21960 1.87920 1.21753 1.05056 1.00218 0.89469 1.20073 1.02916 0.97298 0.88117 1.20722 0.95441 1.01669 0.98866 1.21669 0.96124 0.95228 0.92836 1.21332 1.00824 1.01077 0.97864 1.20208 0.90192 0.91515 0.86795 1.86210 1.41853 1.61913 1.33091 1.23001 0.89831 0.94053 0.98768 1.67318 1.19940 1.26521 1.14287 1.22623 1.00055 0.90932 0.88641 1.21812 0.95512 0.96156 0.83130 0.88266 1.23271 0.97247 0.99382 0.98315 1.22075 0.84748 0.91714 0.99284 1.44734 1.02720 1.49225 1.37880 1.19307 0.91642 1.16558 1.09122 0.90819 1.25493 0.96048 1.01977 1.01776 1.70020 1.02591 1.44858 1.41621 0.85213 0.76821 0.78638 0.78977 1.20621 1.21926 1.20875 1.21685 0.94100 0.92898 0.91161 0.91134 0.90789 0.92554 0.91347 0.88581 0.87504 0.86823 0.90111 0.90565 0.81614 0.82508 0.92711 0.86130 0.92782 0.81154 0.89554 0.91467 0.91684 0.94915 0.94345 0.95641 0.95987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 9.06 71.98 0.65 -3.48 16 2 C 0.10 2.74 4.98 86.38 0.43 3.17 16 3 N -0.59 -17.58 2.45 -791.26 -1.94 -19.51 16 4 C 0.51 13.85 7.66 87.66 0.67 14.52 16 5 O -0.58 -19.62 15.37 -3.05 -0.05 -19.67 16 6 C -0.13 -2.20 4.35 29.85 0.13 -2.07 16 7 C -0.05 -0.75 4.66 29.85 0.14 -0.61 16 8 C -0.16 -2.54 5.15 -19.77 -0.10 -2.64 16 9 C -0.03 -0.45 9.85 22.45 0.22 -0.23 16 10 C -0.19 -2.98 10.04 22.47 0.23 -2.75 16 11 C 0.29 5.78 7.49 84.79 0.63 6.42 16 12 O -0.32 -6.14 10.48 -89.90 -0.94 -7.09 16 13 C 0.04 0.52 10.38 113.37 1.18 1.70 16 14 N -0.56 -11.48 9.22 -308.96 -2.85 -14.33 16 15 C 0.13 2.31 10.85 84.63 0.92 3.23 16 16 C 0.14 4.88 3.58 46.18 0.17 5.04 16 17 H 0.10 3.53 7.01 -2.39 -0.02 3.51 16 18 C -0.14 -5.19 6.09 31.98 0.19 -4.99 16 19 C 0.15 6.63 4.64 86.85 0.40 7.03 16 20 N -0.62 -30.53 2.97 -692.01 -2.06 -32.59 16 21 C -0.24 -12.94 10.27 84.03 0.86 -12.08 16 22 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 23 C -0.06 -3.28 5.49 84.86 0.47 -2.82 16 24 N -0.94 -53.50 10.09 21.65 0.22 -53.29 16 25 Si 0.97 44.69 29.55 68.60 2.03 46.71 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 28 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 29 C 0.13 5.34 6.25 86.73 0.54 5.88 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.39 6.94 -2.39 -0.02 1.37 16 32 H 0.06 1.63 4.34 -2.39 -0.01 1.62 16 33 H 0.07 2.52 5.18 -2.39 -0.01 2.51 16 34 H 0.10 2.07 6.48 -2.39 -0.02 2.05 16 35 H 0.11 1.64 7.25 -2.39 -0.02 1.62 16 36 H 0.11 1.61 6.94 -2.39 -0.02 1.59 16 37 H 0.08 1.38 8.05 -2.38 -0.02 1.36 16 38 H 0.08 1.38 8.05 -2.39 -0.02 1.36 16 39 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 41 H 0.05 0.77 8.10 -2.38 -0.02 0.75 16 42 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 44 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 45 H 0.09 2.75 6.45 -2.39 -0.02 2.74 16 46 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.07 3.49 5.87 -2.39 -0.01 3.48 16 48 H 0.03 1.48 4.04 -2.39 -0.01 1.47 16 49 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 50 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.02 0.94 8.04 -2.39 -0.02 0.92 16 Total: -1.00 -68.52 395.96 3.09 -65.43 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.94 Total: 19.02 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 7.73 Total: 15.30 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -6.62 Total: -119.72 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.99 Total: -26.75 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -68.52 3.09 -65.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269339637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.714 kcal (2) G-P(sol) polarization free energy of solvation -68.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds