Wall clock time and date at job start Wed Apr 1 2020 04:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46511 * 109.46880 * 2 1 4 4 C 1.36933 * 119.99752 * 272.07204 * 3 2 1 5 5 H 1.07999 * 120.00019 * 174.54976 * 4 3 2 6 6 C 1.38813 * 120.00174 * 354.55035 * 4 3 2 7 7 N 1.31620 * 120.00293 * 33.29362 * 6 4 3 8 8 Si 1.86799 * 119.99984 * 213.29584 * 6 4 3 9 9 H 1.48500 * 109.47147 * 84.99942 * 8 6 4 10 10 H 1.48502 * 109.46959 * 204.99653 * 8 6 4 11 11 H 1.48496 * 109.47099 * 324.99283 * 8 6 4 12 12 C 1.46493 * 119.99799 * 92.07291 * 3 2 1 13 13 C 1.53008 * 109.47298 * 269.99746 * 12 3 2 14 14 C 1.53031 * 109.46052 * 175.00189 * 13 12 3 15 15 C 1.53189 * 109.31123 * 181.38506 * 14 13 12 16 16 N 1.46928 * 108.89694 * 305.29578 * 15 14 13 17 17 C 1.34772 * 120.63258 * 233.68189 * 16 15 14 18 18 O 1.21589 * 120.00024 * 6.12866 * 17 16 15 19 19 C 1.47611 * 120.00158 * 186.12962 * 17 16 15 20 20 C 1.40287 * 120.50263 * 208.25577 * 19 17 16 21 21 C 1.37953 * 118.35906 * 179.97438 * 20 19 17 22 22 C 1.39169 * 119.26582 * 0.02562 * 21 20 19 23 23 O 1.35494 * 119.52378 * 179.97438 * 22 21 20 24 24 C 1.42903 * 116.99630 * 179.97438 * 23 22 21 25 25 N 1.32408 * 120.94776 * 359.97438 * 22 21 20 26 26 C 1.31674 * 121.79624 * 359.70767 * 25 22 21 27 27 C 1.47203 * 118.55198 * 53.53790 * 16 15 14 28 28 C 1.53039 * 109.45890 * 295.07551 * 13 12 3 29 29 H 1.09003 * 109.47092 * 60.00319 * 1 2 3 30 30 H 1.09005 * 109.46966 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47695 * 300.00138 * 1 2 3 32 32 H 1.08999 * 109.47437 * 240.00294 * 2 1 3 33 33 H 1.09003 * 109.47092 * 119.99681 * 2 1 3 34 34 H 0.96992 * 120.00601 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.46848 * 150.00550 * 12 3 2 36 36 H 1.08996 * 109.47593 * 30.00273 * 12 3 2 37 37 H 1.08999 * 109.45770 * 55.02934 * 13 12 3 38 38 H 1.09008 * 109.49885 * 61.43933 * 14 13 12 39 39 H 1.08995 * 109.52664 * 301.35780 * 14 13 12 40 40 H 1.09002 * 109.58742 * 65.15525 * 15 14 13 41 41 H 1.09004 * 109.58884 * 185.43699 * 15 14 13 42 42 H 1.08004 * 120.81879 * 359.97300 * 20 19 17 43 43 H 1.07999 * 120.36760 * 179.97438 * 21 20 19 44 44 H 1.09008 * 109.47238 * 179.97438 * 24 23 22 45 45 H 1.09000 * 109.47186 * 299.99582 * 24 23 22 46 46 H 1.09000 * 109.47228 * 59.99903 * 24 23 22 47 47 H 1.07996 * 119.68206 * 180.28495 * 26 25 22 48 48 H 1.08997 * 109.53101 * 186.67716 * 27 16 15 49 49 H 1.09001 * 109.67759 * 66.37199 * 27 16 15 50 50 H 1.09001 * 109.49968 * 298.56227 * 28 13 12 51 51 H 1.09000 * 109.50220 * 58.65801 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2060 2.0411 -1.1851 5 1 2.4810 3.0855 -1.1841 6 6 2.0429 1.3676 -2.3879 7 7 1.1451 0.4105 -2.4898 8 14 3.0978 1.8194 -3.8619 9 1 4.3878 1.0873 -3.7905 10 1 2.3867 1.4485 -5.1117 11 1 3.3573 3.2815 -3.8553 12 6 2.3056 2.0566 1.2679 13 6 1.0465 2.7722 1.7615 14 6 1.3102 3.3723 3.1443 15 6 0.0371 4.0581 3.6500 16 7 -0.4082 5.0345 2.6465 17 6 -0.6298 6.3189 2.9892 18 8 -0.3557 6.7054 4.1090 19 6 -1.2052 7.2567 2.0051 20 6 -0.9186 8.6281 2.0763 21 6 -1.4796 9.4646 1.1336 22 6 -2.3050 8.9258 0.1511 23 8 -2.8592 9.7426 -0.7770 24 6 -3.6970 9.1324 -1.7608 25 7 -2.5565 7.6265 0.1105 26 6 -2.0373 6.7915 0.9863 27 6 -0.6034 4.5794 1.2603 28 6 0.6768 3.8879 0.7813 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.0314 -0.0604 -3.3301 35 1 3.1027 2.7851 1.1190 36 1 2.6194 1.3210 2.0084 37 1 0.2250 2.0588 1.8258 38 1 2.1150 4.1044 3.0758 39 1 1.5965 2.5806 3.8365 40 1 -0.7426 3.3123 3.8054 41 1 0.2461 4.5694 4.5898 42 1 -0.2747 9.0194 2.8501 43 1 -1.2812 10.5259 1.1582 44 1 -4.0752 9.8962 -2.4404 45 1 -3.1209 8.3979 -2.3236 46 1 -4.5344 8.6377 -1.2686 47 1 -2.2618 5.7374 0.9184 48 1 -0.8164 5.4368 0.6219 49 1 -1.4358 3.8769 1.2183 50 1 1.4876 4.6150 0.7350 51 1 0.5121 3.4626 -0.2087 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274950188.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:26 Heat of formation + Delta-G solvation = 11.453934 kcal Electronic energy + Delta-G solvation = -31663.552922 eV Core-core repulsion = 27565.202822 eV Total energy + Delta-G solvation = -4098.350100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.23083 -39.92287 -38.11325 -37.56346 -35.86288 -33.38390 -32.79764 -31.80497 -30.86133 -30.31224 -29.22399 -27.69435 -26.75312 -24.81873 -23.92631 -23.66407 -22.66903 -22.19915 -20.66851 -19.96778 -19.22963 -18.63535 -17.87127 -16.98653 -16.60490 -16.32965 -15.94143 -15.24097 -15.04964 -14.90665 -14.52733 -14.37457 -14.07421 -13.81722 -13.66982 -13.54111 -13.39952 -13.23963 -13.09850 -12.77832 -12.55843 -12.16392 -12.11004 -11.86117 -11.63981 -11.41997 -11.38814 -11.02919 -10.94744 -10.81054 -10.65688 -10.39956 -10.25448 -10.22331 -10.21440 -9.96673 -9.71430 -9.65113 -9.53255 -9.31098 -8.80074 -8.52603 -8.16782 -6.95390 -5.86196 -3.00504 0.54770 0.92743 2.70174 2.76252 2.97820 3.39899 3.48658 3.51262 3.56523 3.95164 4.37222 4.51029 4.55863 4.74422 4.81609 4.98510 5.03576 5.08533 5.13609 5.20136 5.27309 5.31812 5.36343 5.39441 5.43732 5.54079 5.62973 5.67205 5.80131 5.81834 5.91426 6.03299 6.13722 6.14475 6.29623 6.43530 6.50427 6.56715 6.60337 6.65212 6.85623 6.87246 6.96095 7.04387 7.13623 7.17514 7.40524 7.47627 7.70283 7.79007 8.06287 8.11383 8.32387 9.22738 9.89227 10.34870 11.20051 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009678 B = 0.003328 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.442323 B = 8411.944162 C =10345.638541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.161 3.839 3 N -0.599 5.599 4 C -0.251 4.251 5 H 0.076 0.924 6 C 0.007 3.993 7 N -0.882 5.882 8 Si 0.873 3.127 9 H -0.290 1.290 10 H -0.295 1.295 11 H -0.283 1.283 12 C 0.159 3.841 13 C -0.110 4.110 14 C -0.129 4.129 15 C 0.115 3.885 16 N -0.600 5.600 17 C 0.569 3.431 18 O -0.547 6.547 19 C -0.223 4.223 20 C 0.014 3.986 21 C -0.199 4.199 22 C 0.339 3.661 23 O -0.305 6.305 24 C 0.037 3.963 25 N -0.542 5.542 26 C 0.169 3.831 27 C 0.084 3.916 28 C -0.121 4.121 29 H 0.085 0.915 30 H 0.017 0.983 31 H 0.012 0.988 32 H 0.087 0.913 33 H 0.003 0.997 34 H 0.252 0.748 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.151 0.849 43 H 0.148 0.852 44 H 0.097 0.903 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.180 0.820 48 H 0.091 0.909 49 H 0.074 0.926 50 H 0.054 0.946 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.651 12.681 7.525 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.036 3.964 3 N -0.321 5.321 4 C -0.379 4.379 5 H 0.094 0.906 6 C -0.190 4.190 7 N -0.527 5.527 8 Si 0.703 3.297 9 H -0.217 1.217 10 H -0.222 1.222 11 H -0.209 1.209 12 C 0.032 3.968 13 C -0.132 4.132 14 C -0.168 4.168 15 C -0.007 4.007 16 N -0.332 5.332 17 C 0.357 3.643 18 O -0.426 6.426 19 C -0.229 4.229 20 C -0.012 4.012 21 C -0.219 4.219 22 C 0.160 3.840 23 O -0.211 6.211 24 C -0.058 4.058 25 N -0.265 5.265 26 C 0.012 3.988 27 C -0.038 4.038 28 C -0.159 4.159 29 H 0.104 0.896 30 H 0.036 0.964 31 H 0.031 0.969 32 H 0.105 0.895 33 H 0.022 0.978 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.169 0.831 43 H 0.166 0.834 44 H 0.115 0.885 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.197 0.803 48 H 0.109 0.891 49 H 0.092 0.908 50 H 0.073 0.927 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.081 12.750 7.246 16.744 hybrid contribution 0.813 0.270 -0.474 0.979 sum -7.267 13.020 6.773 16.377 Atomic orbital electron populations 1.22308 0.99455 0.97973 1.00706 1.20979 0.92389 0.84781 0.98220 1.44237 1.76142 1.10899 1.00802 1.19138 1.40549 0.94866 0.83376 0.90595 1.24667 0.98843 0.98492 0.97033 1.70263 1.29883 1.27393 1.25139 0.86720 0.82232 0.77900 0.82889 1.21748 1.22220 1.20870 1.20765 0.93713 0.94511 0.87845 1.21970 1.01785 0.97039 0.92364 1.21969 0.96784 0.99751 0.98256 1.21633 0.96700 0.90729 0.91683 1.48113 1.65959 1.08322 1.10795 1.17897 0.77970 0.81568 0.86846 1.90754 1.53141 1.76895 1.21812 1.20772 1.06092 0.95312 1.00674 1.21456 0.93545 0.90986 0.95165 1.21011 1.02193 1.02157 0.96563 1.20126 0.89070 0.87112 0.87688 1.86204 1.61308 1.34577 1.39041 1.22944 0.93653 0.99396 0.89786 1.67427 1.27288 1.02865 1.28935 1.23300 0.89338 0.99427 0.86729 1.22657 1.00270 0.99725 0.81122 1.21961 0.94983 0.97074 1.01887 0.89616 0.96421 0.96883 0.89545 0.97849 0.93795 0.93808 0.94462 0.91244 0.91948 0.91154 0.91555 0.89437 0.83107 0.83423 0.88462 0.91756 0.92022 0.80321 0.89109 0.90782 0.92719 0.87482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.73 37.16 0.36 -2.76 16 2 C 0.16 3.66 5.71 -4.04 -0.02 3.63 16 3 N -0.60 -13.48 2.41 -173.23 -0.42 -13.90 16 4 C -0.25 -6.23 7.70 -15.06 -0.12 -6.35 16 5 H 0.08 1.88 7.68 -52.49 -0.40 1.48 16 6 C 0.01 0.19 4.92 -17.43 -0.09 0.11 16 7 N -0.88 -23.29 8.68 55.49 0.48 -22.81 16 8 Si 0.87 20.65 29.66 -169.99 -5.04 15.60 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 C 0.16 2.96 5.21 -4.04 -0.02 2.94 16 13 C -0.11 -1.75 2.36 -90.58 -0.21 -1.96 16 14 C -0.13 -1.72 5.36 -26.62 -0.14 -1.86 16 15 C 0.11 1.48 6.43 -3.71 -0.02 1.46 16 16 N -0.60 -8.10 2.98 -173.74 -0.52 -8.62 16 17 C 0.57 8.20 7.47 -12.44 -0.09 8.11 16 18 O -0.55 -9.27 16.16 5.29 0.09 -9.19 16 19 C -0.22 -2.82 5.52 -104.82 -0.58 -3.40 16 20 C 0.01 0.16 9.72 -38.92 -0.38 -0.22 16 21 C -0.20 -2.06 10.02 -39.34 -0.39 -2.46 16 22 C 0.34 4.00 7.49 -16.96 -0.13 3.87 16 23 O -0.31 -3.31 10.46 -18.17 -0.19 -3.50 16 24 C 0.04 0.31 10.37 101.05 1.05 1.36 16 25 N -0.54 -6.76 9.18 -12.96 -0.12 -6.88 16 26 C 0.17 2.03 8.61 -17.14 -0.15 1.89 16 27 C 0.08 1.11 4.71 -3.56 -0.02 1.09 16 28 C -0.12 -1.95 4.79 -26.61 -0.13 -2.08 16 29 H 0.09 2.10 6.48 -51.93 -0.34 1.76 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.01 0.25 6.26 -51.93 -0.32 -0.08 16 32 H 0.09 2.22 5.75 -51.93 -0.30 1.92 16 33 H 0.00 0.07 7.87 -51.93 -0.41 -0.34 16 34 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 35 H 0.04 0.83 8.04 -51.93 -0.42 0.41 16 36 H 0.04 0.66 7.88 -51.93 -0.41 0.25 16 37 H 0.07 1.18 6.25 -51.93 -0.32 0.86 16 38 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 1.17 7.00 -51.93 -0.36 0.80 16 42 H 0.15 1.50 7.96 -52.48 -0.42 1.08 16 43 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 45 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 46 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 47 H 0.18 1.94 5.26 -52.49 -0.28 1.66 16 48 H 0.09 1.14 4.07 -51.93 -0.21 0.93 16 49 H 0.07 0.92 8.01 -51.93 -0.42 0.51 16 50 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.11 2.09 6.19 -51.93 -0.32 1.76 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -28.84 393.10 -8.74 -37.58 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.86 Total: 2.43 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.08 Total: 3.37 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.57 Total: -52.21 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.10 Total: -12.69 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.04 Total: 15.60 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.84 -8.74 -37.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274950188.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.030 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds