Wall clock time and date at job start Wed Apr 1 2020 04:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46511 * 109.46880 * 2 1 4 4 C 1.36933 * 119.99752 * 272.07204 * 3 2 1 5 5 H 1.07999 * 120.00019 * 174.54976 * 4 3 2 6 6 C 1.38813 * 120.00174 * 354.55035 * 4 3 2 7 7 N 1.31620 * 120.00293 * 33.29362 * 6 4 3 8 8 Si 1.86799 * 119.99984 * 213.29584 * 6 4 3 9 9 H 1.48500 * 109.47147 * 84.99942 * 8 6 4 10 10 H 1.48502 * 109.46959 * 204.99653 * 8 6 4 11 11 H 1.48496 * 109.47099 * 324.99283 * 8 6 4 12 12 C 1.46493 * 119.99799 * 92.07291 * 3 2 1 13 13 C 1.53008 * 109.47298 * 269.99746 * 12 3 2 14 14 C 1.53031 * 109.46052 * 175.00189 * 13 12 3 15 15 C 1.53189 * 109.31123 * 181.38506 * 14 13 12 16 16 N 1.46928 * 108.89694 * 305.29578 * 15 14 13 17 17 C 1.34772 * 120.63258 * 233.68189 * 16 15 14 18 18 O 1.21589 * 120.00024 * 6.12866 * 17 16 15 19 19 C 1.47611 * 120.00158 * 186.12962 * 17 16 15 20 20 C 1.40287 * 120.50263 * 208.25577 * 19 17 16 21 21 C 1.37953 * 118.35906 * 179.97438 * 20 19 17 22 22 C 1.39169 * 119.26582 * 0.02562 * 21 20 19 23 23 O 1.35494 * 119.52378 * 179.97438 * 22 21 20 24 24 C 1.42903 * 116.99630 * 179.97438 * 23 22 21 25 25 N 1.32408 * 120.94776 * 359.97438 * 22 21 20 26 26 C 1.31674 * 121.79624 * 359.70767 * 25 22 21 27 27 C 1.47203 * 118.55198 * 53.53790 * 16 15 14 28 28 C 1.53039 * 109.45890 * 295.07551 * 13 12 3 29 29 H 1.09003 * 109.47092 * 60.00319 * 1 2 3 30 30 H 1.09005 * 109.46966 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47695 * 300.00138 * 1 2 3 32 32 H 1.08999 * 109.47437 * 240.00294 * 2 1 3 33 33 H 1.09003 * 109.47092 * 119.99681 * 2 1 3 34 34 H 0.96992 * 120.00601 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.46848 * 150.00550 * 12 3 2 36 36 H 1.08996 * 109.47593 * 30.00273 * 12 3 2 37 37 H 1.08999 * 109.45770 * 55.02934 * 13 12 3 38 38 H 1.09008 * 109.49885 * 61.43933 * 14 13 12 39 39 H 1.08995 * 109.52664 * 301.35780 * 14 13 12 40 40 H 1.09002 * 109.58742 * 65.15525 * 15 14 13 41 41 H 1.09004 * 109.58884 * 185.43699 * 15 14 13 42 42 H 1.08004 * 120.81879 * 359.97300 * 20 19 17 43 43 H 1.07999 * 120.36760 * 179.97438 * 21 20 19 44 44 H 1.09008 * 109.47238 * 179.97438 * 24 23 22 45 45 H 1.09000 * 109.47186 * 299.99582 * 24 23 22 46 46 H 1.09000 * 109.47228 * 59.99903 * 24 23 22 47 47 H 1.07996 * 119.68206 * 180.28495 * 26 25 22 48 48 H 1.08997 * 109.53101 * 186.67716 * 27 16 15 49 49 H 1.09001 * 109.67759 * 66.37199 * 27 16 15 50 50 H 1.09001 * 109.49968 * 298.56227 * 28 13 12 51 51 H 1.09000 * 109.50220 * 58.65801 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2060 2.0411 -1.1851 5 1 2.4810 3.0855 -1.1841 6 6 2.0429 1.3676 -2.3879 7 7 1.1451 0.4105 -2.4898 8 14 3.0978 1.8194 -3.8619 9 1 4.3878 1.0873 -3.7905 10 1 2.3867 1.4485 -5.1117 11 1 3.3573 3.2815 -3.8553 12 6 2.3056 2.0566 1.2679 13 6 1.0465 2.7722 1.7615 14 6 1.3102 3.3723 3.1443 15 6 0.0371 4.0581 3.6500 16 7 -0.4082 5.0345 2.6465 17 6 -0.6298 6.3189 2.9892 18 8 -0.3557 6.7054 4.1090 19 6 -1.2052 7.2567 2.0051 20 6 -0.9186 8.6281 2.0763 21 6 -1.4796 9.4646 1.1336 22 6 -2.3050 8.9258 0.1511 23 8 -2.8592 9.7426 -0.7770 24 6 -3.6970 9.1324 -1.7608 25 7 -2.5565 7.6265 0.1105 26 6 -2.0373 6.7915 0.9863 27 6 -0.6034 4.5794 1.2603 28 6 0.6768 3.8879 0.7813 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.0314 -0.0604 -3.3301 35 1 3.1027 2.7851 1.1190 36 1 2.6194 1.3210 2.0084 37 1 0.2250 2.0588 1.8258 38 1 2.1150 4.1044 3.0758 39 1 1.5965 2.5806 3.8365 40 1 -0.7426 3.3123 3.8054 41 1 0.2461 4.5694 4.5898 42 1 -0.2747 9.0194 2.8501 43 1 -1.2812 10.5259 1.1582 44 1 -4.0752 9.8962 -2.4404 45 1 -3.1209 8.3979 -2.3236 46 1 -4.5344 8.6377 -1.2686 47 1 -2.2618 5.7374 0.9184 48 1 -0.8164 5.4368 0.6219 49 1 -1.4358 3.8769 1.2183 50 1 1.4876 4.6150 0.7350 51 1 0.5121 3.4626 -0.2087 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274950188.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:25 Heat of formation + Delta-G solvation = -5.016568 kcal Electronic energy + Delta-G solvation = -31664.267137 eV Core-core repulsion = 27565.202822 eV Total energy + Delta-G solvation = -4099.064315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.17999 -40.94337 -39.21949 -38.67010 -37.41833 -34.73260 -33.69387 -33.08794 -32.47112 -31.34225 -30.89937 -28.58153 -28.06939 -26.17495 -25.07288 -24.84457 -23.78363 -23.55050 -22.14720 -21.40051 -20.38623 -19.48566 -18.86731 -18.50658 -17.89120 -17.18487 -17.01742 -16.82316 -16.29491 -15.96208 -15.65587 -15.48024 -15.36325 -15.27717 -14.92281 -14.67794 -14.57062 -14.34955 -14.27852 -14.00315 -13.74241 -13.60988 -13.52070 -13.13204 -12.92927 -12.78716 -12.68810 -12.55625 -12.39361 -12.26830 -12.10172 -11.93630 -11.83777 -11.70092 -11.33763 -11.25332 -11.12397 -10.99624 -10.93688 -10.70605 -10.09883 -9.79385 -9.54982 -8.78453 -7.81496 -4.93750 -0.38202 0.06338 1.48169 1.55996 1.57973 1.64123 1.89427 2.01519 2.59622 2.63272 3.09037 3.28353 3.36556 3.66822 3.72366 3.85070 3.91276 3.99040 4.04505 4.17713 4.21410 4.37627 4.41727 4.42531 4.47646 4.53851 4.60764 4.64871 4.74889 4.77865 4.79221 4.87850 4.91504 4.94992 5.05587 5.10218 5.15462 5.19737 5.21911 5.22858 5.31294 5.40379 5.42800 5.69196 5.70756 5.74888 5.93041 6.04803 6.22935 6.30054 6.41265 6.58259 7.01252 7.29985 8.05014 8.45524 9.23355 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009678 B = 0.003328 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.442323 B = 8411.944162 C =10345.638541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.163 3.837 3 N -0.610 5.610 4 C -0.240 4.240 5 H 0.072 0.928 6 C -0.037 4.037 7 N -0.900 5.900 8 Si 0.919 3.081 9 H -0.298 1.298 10 H -0.303 1.303 11 H -0.280 1.280 12 C 0.156 3.844 13 C -0.098 4.098 14 C -0.118 4.118 15 C 0.114 3.886 16 N -0.598 5.598 17 C 0.570 3.430 18 O -0.575 6.575 19 C -0.237 4.237 20 C 0.013 3.987 21 C -0.191 4.191 22 C 0.328 3.672 23 O -0.310 6.310 24 C 0.033 3.967 25 N -0.555 5.555 26 C 0.167 3.833 27 C 0.094 3.906 28 C -0.114 4.114 29 H 0.053 0.947 30 H 0.026 0.974 31 H 0.030 0.970 32 H 0.054 0.946 33 H 0.023 0.977 34 H 0.244 0.756 35 H 0.038 0.962 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.162 0.838 43 H 0.174 0.826 44 H 0.126 0.874 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.188 0.812 48 H 0.099 0.901 49 H 0.087 0.913 50 H 0.044 0.956 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 13.781 8.696 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.037 3.963 3 N -0.332 5.332 4 C -0.370 4.370 5 H 0.090 0.910 6 C -0.232 4.232 7 N -0.547 5.547 8 Si 0.750 3.250 9 H -0.226 1.226 10 H -0.231 1.231 11 H -0.205 1.205 12 C 0.030 3.970 13 C -0.119 4.119 14 C -0.156 4.156 15 C -0.007 4.007 16 N -0.329 5.329 17 C 0.359 3.641 18 O -0.457 6.457 19 C -0.242 4.242 20 C -0.013 4.013 21 C -0.212 4.212 22 C 0.149 3.851 23 O -0.216 6.216 24 C -0.061 4.061 25 N -0.279 5.279 26 C 0.010 3.990 27 C -0.027 4.027 28 C -0.152 4.152 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.180 0.820 43 H 0.192 0.808 44 H 0.144 0.856 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.204 0.796 48 H 0.116 0.884 49 H 0.105 0.895 50 H 0.063 0.937 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.511 13.861 8.428 18.319 hybrid contribution 0.957 -0.021 -0.823 1.262 sum -7.554 13.841 7.605 17.506 Atomic orbital electron populations 1.22076 0.98563 0.98321 0.99888 1.20856 0.93074 0.84788 0.97541 1.44375 1.76281 1.11013 1.01526 1.19257 1.38742 0.94659 0.84295 0.90969 1.25091 0.99998 0.99423 0.98720 1.70380 1.30880 1.28515 1.24915 0.85977 0.80629 0.77500 0.80882 1.22583 1.23073 1.20541 1.20929 0.94758 0.94761 0.86588 1.21743 0.99926 0.96571 0.93695 1.21863 0.96905 1.00049 0.96827 1.21696 0.96853 0.90818 0.91359 1.48142 1.65621 1.08353 1.10825 1.18109 0.77486 0.81771 0.86694 1.90736 1.54578 1.77347 1.23002 1.20745 1.06940 0.95744 1.00811 1.21650 0.93538 0.90534 0.95541 1.21274 1.01051 1.03336 0.95506 1.20442 0.89325 0.87096 0.88222 1.86206 1.61500 1.34722 1.39188 1.23138 0.93111 1.00302 0.89573 1.67428 1.27795 1.03449 1.29237 1.23381 0.89241 0.99815 0.86538 1.22559 0.98988 1.00047 0.81154 1.21783 0.96128 0.96981 1.00334 0.92774 0.95477 0.95147 0.92765 0.95887 0.94620 0.94374 0.92947 0.91777 0.92588 0.89169 0.89974 0.89570 0.82010 0.80847 0.85608 0.92573 0.92092 0.79570 0.88366 0.89534 0.93729 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.45 9.73 71.98 0.70 -4.74 16 2 C 0.16 7.27 5.71 86.38 0.49 7.76 16 3 N -0.61 -27.13 2.41 -701.99 -1.69 -28.81 16 4 C -0.24 -11.96 7.70 84.03 0.65 -11.32 16 5 H 0.07 3.60 7.68 -2.91 -0.02 3.58 16 6 C -0.04 -1.91 4.92 84.86 0.42 -1.49 16 7 N -0.90 -48.47 8.68 21.65 0.19 -48.28 16 8 Si 0.92 43.12 29.66 68.60 2.03 45.16 16 9 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 10 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 C 0.16 5.56 5.21 86.38 0.45 6.01 16 13 C -0.10 -2.96 2.36 -10.77 -0.03 -2.98 16 14 C -0.12 -2.86 5.36 30.67 0.16 -2.70 16 15 C 0.11 2.69 6.43 86.36 0.56 3.25 16 16 N -0.60 -15.20 2.98 -821.86 -2.45 -17.65 16 17 C 0.57 15.72 7.47 86.72 0.65 16.37 16 18 O -0.58 -18.87 16.16 -4.00 -0.06 -18.94 16 19 C -0.24 -5.71 5.52 -19.99 -0.11 -5.82 16 20 C 0.01 0.27 9.72 22.70 0.22 0.49 16 21 C -0.19 -3.61 10.02 22.43 0.22 -3.39 16 22 C 0.33 7.28 7.49 84.83 0.64 7.92 16 23 O -0.31 -6.23 10.46 -87.95 -0.92 -7.15 16 24 C 0.03 0.51 10.37 113.37 1.18 1.68 16 25 N -0.56 -13.31 9.18 -307.82 -2.83 -16.14 16 26 C 0.17 3.85 8.61 85.03 0.73 4.58 16 27 C 0.09 2.37 4.71 86.31 0.41 2.78 16 28 C -0.11 -3.59 4.79 30.67 0.15 -3.45 16 29 H 0.05 2.65 6.48 -2.39 -0.02 2.63 16 30 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.03 1.14 6.26 -2.39 -0.01 1.12 16 32 H 0.05 2.80 5.75 -2.39 -0.01 2.79 16 33 H 0.02 0.92 7.87 -2.39 -0.02 0.91 16 34 H 0.24 13.10 8.31 -92.71 -0.77 12.33 16 35 H 0.04 1.40 8.04 -2.39 -0.02 1.38 16 36 H 0.05 1.72 7.88 -2.39 -0.02 1.70 16 37 H 0.06 2.04 6.25 -2.39 -0.01 2.02 16 38 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 2.12 7.00 -2.38 -0.02 2.10 16 42 H 0.16 2.96 7.96 -2.91 -0.02 2.93 16 43 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 44 H 0.13 1.15 8.14 -2.38 -0.02 1.14 16 45 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 46 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 47 H 0.19 3.83 5.26 -2.91 -0.02 3.81 16 48 H 0.10 2.37 4.07 -2.39 -0.01 2.37 16 49 H 0.09 2.00 8.01 -2.39 -0.02 1.98 16 50 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.07 2.85 6.19 -2.39 -0.01 2.83 16 Total: -1.00 -61.81 393.10 2.69 -59.13 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.93 Total: 17.75 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 7.48 Total: 14.94 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -6.78 Total: -110.88 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.98 Total: -26.09 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.16 kcal Total: -61.81 2.69 -59.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274950188.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.109 kcal (2) G-P(sol) polarization free energy of solvation -61.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds