Wall clock time and date at job start Wed Apr 1 2020 05:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46493 * 109.47489 * 2 1 4 4 C 1.46504 * 119.99729 * 269.99967 * 3 2 1 5 5 C 1.50698 * 109.47101 * 269.99966 * 4 3 2 6 6 H 1.07996 * 120.00264 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99791 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00201 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99922 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46714 * 60.00298 * 9 7 5 11 11 H 1.48496 * 109.46943 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47493 * 300.00288 * 9 7 5 13 13 C 1.34771 * 120.00451 * 89.99951 * 3 2 1 14 14 O 1.21279 * 120.00753 * 180.02562 * 13 3 2 15 15 C 1.50712 * 119.99797 * 0.02562 * 13 3 2 16 16 N 1.46895 * 109.46886 * 179.97438 * 15 13 3 17 17 C 1.48559 * 110.99964 * 290.12216 * 16 15 13 18 18 C 1.54386 * 104.59244 * 200.96423 * 17 16 15 19 19 C 1.54261 * 105.06151 * 23.85537 * 18 17 16 20 20 H 1.08995 * 110.32571 * 118.99791 * 19 18 17 21 21 N 1.46505 * 110.32247 * 241.10390 * 19 18 17 22 22 C 1.34777 * 119.99724 * 272.17392 * 21 19 18 23 23 O 1.21613 * 120.00252 * 359.97438 * 22 21 19 24 24 C 1.43208 * 119.99469 * 179.72544 * 22 21 19 25 25 C 9.91371 * 99.74385 * 243.88568 * 3 1 2 26 26 C 9.79664 * 118.21395 * 212.24554 * 13 1 2 27 27 C 1.53005 * 117.49757 * 202.54528 * 26 25 24 28 28 C 1.52998 * 117.50010 * 133.88357 * 26 25 24 29 29 C 1.48825 * 110.96742 * 174.70447 * 16 15 13 30 30 H 1.08993 * 109.46744 * 60.00121 * 1 2 3 31 31 H 1.08994 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46666 * 300.00408 * 1 2 3 33 33 H 1.09001 * 109.46666 * 239.99592 * 2 1 3 34 34 H 1.08999 * 109.47157 * 120.00451 * 2 1 3 35 35 H 1.08999 * 109.47346 * 30.00055 * 4 3 2 36 36 H 1.09006 * 109.47159 * 149.99859 * 4 3 2 37 37 H 0.96997 * 120.00534 * 180.02562 * 8 7 5 38 38 H 1.09003 * 109.46717 * 59.99670 * 15 13 3 39 39 H 1.09001 * 109.46413 * 300.00010 * 15 13 3 40 40 H 1.09001 * 110.40995 * 82.18790 * 17 16 15 41 41 H 1.09000 * 110.51514 * 319.79269 * 17 16 15 42 42 H 1.09002 * 110.31906 * 264.95826 * 18 17 16 43 43 H 1.09002 * 110.40570 * 142.79712 * 18 17 16 44 44 H 0.97000 * 119.99792 * 92.16960 * 21 19 18 45 45 H 1.09005 * 115.55168 * 348.20743 * 26 25 24 46 46 H 1.09000 * 117.49805 * 359.97438 * 27 26 25 47 47 H 1.08990 * 117.50017 * 145.01923 * 27 26 25 48 48 H 1.08997 * 117.50266 * 214.97709 * 28 26 25 49 49 H 1.09006 * 117.49586 * 359.97438 * 28 26 25 50 50 H 1.09003 * 110.45060 * 40.32842 * 29 16 15 51 51 H 1.08996 * 110.49663 * 277.79798 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3430 1.2307 -1.0958 7 6 4.1495 2.3902 -2.8776 8 7 3.3499 3.1271 -3.6172 9 14 5.9139 2.0971 -3.4165 10 1 6.1416 0.6405 -3.5944 11 1 6.1614 2.7970 -4.7026 12 1 6.8412 2.6203 -2.3812 13 6 2.2431 2.0165 1.1671 14 8 2.6470 3.1601 1.1672 15 6 1.9925 1.3059 2.4723 16 7 2.3112 2.2058 3.5888 17 6 3.7753 2.4397 3.6827 18 6 4.0014 2.9111 5.1354 19 6 2.8049 2.3487 5.9302 20 1 3.1531 1.6704 6.7091 21 7 2.0263 3.4412 6.5187 22 6 2.3562 3.9263 7.7321 23 8 3.2998 3.4567 8.3387 24 6 1.5986 4.9982 8.3048 25 6 0.9746 5.8779 8.7733 26 6 0.1956 6.9798 9.3615 27 6 -1.0817 6.6153 10.1208 28 6 -1.1720 7.2847 8.7471 29 6 1.9556 1.5831 4.8929 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.5819 1.6876 -2.0284 36 1 2.0957 3.1410 -1.1385 37 1 3.6758 3.5175 -4.4431 38 1 2.6230 0.4186 2.5298 39 1 0.9446 1.0115 2.5302 40 1 4.0824 3.2139 2.9796 41 1 4.3226 1.5163 3.4932 42 1 4.0094 4.0000 5.1830 43 1 4.9369 2.5089 5.5242 44 1 1.2734 3.8155 6.0350 45 1 0.7793 7.8219 9.7336 46 1 -1.3454 5.5596 10.1844 47 1 -1.3386 7.2177 10.9920 48 1 -1.4883 8.3273 8.7153 49 1 -1.4948 6.6697 7.9070 50 1 2.2174 0.5250 4.8937 51 1 0.8936 1.7131 5.1009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316977657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:41 Heat of formation + Delta-G solvation = 21.119739 kcal Electronic energy + Delta-G solvation = -29702.730975 eV Core-core repulsion = 25604.800016 eV Total energy + Delta-G solvation = -4097.930959 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.31548 -39.30729 -38.10878 -37.92277 -35.27662 -34.47315 -33.08169 -32.79383 -31.20598 -30.09069 -28.75519 -27.74198 -25.92940 -24.95036 -23.04925 -22.95276 -22.60880 -22.43286 -21.18867 -20.67728 -19.16354 -18.25571 -17.04939 -16.82281 -16.62311 -16.31362 -15.99786 -15.62597 -15.30064 -15.01790 -14.83543 -14.68952 -14.24746 -13.98474 -13.70258 -13.37233 -13.07681 -12.85002 -12.74177 -12.47283 -12.43901 -12.18008 -12.08255 -11.98736 -11.89728 -11.83134 -11.70023 -11.50430 -11.23930 -11.08590 -10.96729 -10.89690 -10.68951 -10.59292 -10.52440 -10.46629 -10.12113 -10.11538 -9.64721 -9.39289 -8.92098 -8.43309 -8.36192 -7.64298 -6.04222 -4.09035 1.23761 1.86057 2.77124 3.11263 3.31019 3.35805 3.37358 3.46130 3.53347 3.64046 3.77458 4.19017 4.24980 4.35005 4.41414 4.44737 4.57295 4.65131 4.98440 5.03458 5.08332 5.09529 5.18639 5.22213 5.29567 5.31299 5.34372 5.36471 5.47700 5.48927 5.49716 5.53843 5.58315 5.62933 5.76224 5.81951 5.99988 6.02075 6.21325 6.24033 6.27704 6.46127 6.79169 6.84569 6.89288 7.11864 7.20837 7.46111 7.56660 7.87421 7.92439 8.23998 8.44813 8.90843 9.14196 9.56101 11.03675 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.001927 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.047729 B =14528.185512 C =14637.033719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.524 6.524 15 C 0.025 3.975 16 N -0.489 5.489 17 C 0.034 3.966 18 C -0.134 4.134 19 C 0.144 3.856 20 H 0.099 0.901 21 N -0.703 5.703 22 C 0.635 3.365 23 O -0.526 6.526 24 C -0.217 4.217 25 C -0.052 4.052 26 C -0.067 4.067 27 C -0.160 4.160 28 C -0.159 4.159 29 C 0.022 3.978 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.264 0.736 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.043 0.957 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.409 0.591 45 H 0.136 0.864 46 H 0.101 0.899 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.102 0.898 50 H 0.061 0.939 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.417 -0.794 23.486 25.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.399 6.399 15 C -0.107 4.107 16 N -0.213 5.213 17 C -0.094 4.094 18 C -0.173 4.173 19 C 0.040 3.960 20 H 0.117 0.883 21 N -0.354 5.354 22 C 0.422 3.578 23 O -0.404 6.404 24 C -0.220 4.220 25 C -0.055 4.055 26 C -0.085 4.085 27 C -0.197 4.197 28 C -0.196 4.196 29 C -0.106 4.106 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.245 0.755 45 H 0.154 0.846 46 H 0.119 0.881 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.121 0.879 50 H 0.079 0.921 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.818 0.055 23.580 25.542 hybrid contribution 1.076 -0.845 -0.634 1.508 sum -8.742 -0.790 22.945 24.567 Atomic orbital electron populations 1.22223 0.96824 1.01328 1.02359 1.21397 0.93491 0.84373 1.02511 1.48250 1.64169 1.13154 1.07696 1.19235 0.96120 0.93643 0.78079 1.21388 0.96956 1.31910 1.06233 0.92644 1.24933 0.97784 0.94946 0.96433 1.69917 1.35717 1.33330 1.14366 0.86577 0.84891 0.78201 0.77845 1.20309 1.21183 1.20200 1.20041 0.78988 0.87088 0.84622 1.90659 1.44788 1.17659 1.86828 1.22287 1.02499 0.94498 0.91378 1.65300 1.15617 1.40094 1.00331 1.23240 0.87648 1.01534 0.96973 1.22797 0.97626 1.02364 0.94509 1.21754 0.91315 0.87968 0.95006 0.88257 1.45921 1.34436 1.37094 1.17916 1.14637 0.82304 0.79949 0.80916 1.90858 1.28311 1.59331 1.61868 1.20678 1.00303 0.98188 1.02860 1.21408 0.94933 0.92786 0.96351 1.18928 0.88950 0.95605 1.04974 1.23121 0.97889 1.02561 0.96093 1.23146 0.96418 1.02806 0.97208 1.23492 1.00563 0.96982 0.89606 0.91996 0.92250 0.93090 0.89994 0.92030 0.95123 0.93910 0.92679 0.92205 0.88484 0.87889 0.93842 0.90281 0.90454 0.75524 0.84622 0.88099 0.87332 0.87268 0.87909 0.92085 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.77 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.61 16 3 N -0.60 -12.28 2.46 -175.05 -0.43 -12.71 16 4 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 5 C -0.53 -14.77 9.39 -34.44 -0.32 -15.09 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 9 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.51 10.19 7.48 -10.98 -0.08 10.11 16 14 O -0.52 -12.87 14.42 5.56 0.08 -12.79 16 15 C 0.02 0.35 3.85 -4.97 -0.02 0.34 16 16 N -0.49 -6.71 5.07 -231.17 -1.17 -7.88 16 17 C 0.03 0.48 5.80 -2.18 -0.01 0.47 16 18 C -0.13 -1.62 6.79 -25.35 -0.17 -1.80 16 19 C 0.14 1.53 3.38 -66.54 -0.22 1.30 16 20 H 0.10 1.05 7.60 -51.93 -0.39 0.65 16 21 N -0.70 -7.38 4.98 -54.89 -0.27 -7.66 16 22 C 0.64 8.03 7.65 -14.33 -0.11 7.92 16 23 O -0.53 -8.33 16.76 5.27 0.09 -8.25 16 24 C -0.22 -2.51 13.63 -38.81 -0.53 -3.04 16 25 C -0.05 -0.51 13.48 -37.10 -0.50 -1.01 16 26 C -0.07 -0.43 6.21 -93.41 -0.58 -1.01 16 27 C -0.16 -0.75 10.21 -26.69 -0.27 -1.02 16 28 C -0.16 -0.77 10.21 -26.69 -0.27 -1.04 16 29 C 0.02 0.22 6.11 -2.03 -0.01 0.21 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.61 7.22 -51.93 -0.38 0.24 16 33 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 34 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.06 0.76 7.14 -51.93 -0.37 0.39 16 39 H 0.10 1.16 7.18 -51.93 -0.37 0.79 16 40 H 0.10 1.84 6.91 -51.93 -0.36 1.48 16 41 H 0.04 0.59 7.82 -51.93 -0.41 0.19 16 42 H 0.08 1.05 7.95 -51.93 -0.41 0.63 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.41 3.75 8.55 -40.82 -0.35 3.40 16 45 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.06 0.52 8.00 -51.93 -0.42 0.11 16 51 H 0.09 0.76 8.00 -51.93 -0.42 0.35 16 LS Contribution 426.44 15.07 6.43 6.43 Total: -1.00 -35.40 426.44 -10.80 -46.20 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.36 Total: 1.42 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -2.88 Total: 4.20 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -1.14 Total: -54.01 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.17 Total: -21.03 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -35.40 -10.80 -46.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316977657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.316 kcal (2) G-P(sol) polarization free energy of solvation -35.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds