Wall clock time and date at job start Wed Apr 1 2020 05:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46493 * 109.47489 * 2 1 4 4 C 1.46504 * 119.99729 * 269.99967 * 3 2 1 5 5 C 1.50698 * 109.47101 * 269.99966 * 4 3 2 6 6 H 1.07996 * 120.00264 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99791 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00201 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99922 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46714 * 60.00298 * 9 7 5 11 11 H 1.48496 * 109.46943 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47493 * 300.00288 * 9 7 5 13 13 C 1.34771 * 120.00451 * 89.99951 * 3 2 1 14 14 O 1.21279 * 120.00753 * 180.02562 * 13 3 2 15 15 C 1.50712 * 119.99797 * 0.02562 * 13 3 2 16 16 N 1.46895 * 109.46886 * 179.97438 * 15 13 3 17 17 C 1.48559 * 110.99964 * 290.12216 * 16 15 13 18 18 C 1.54386 * 104.59244 * 200.96423 * 17 16 15 19 19 C 1.54261 * 105.06151 * 23.85537 * 18 17 16 20 20 H 1.08995 * 110.32571 * 118.99791 * 19 18 17 21 21 N 1.46505 * 110.32247 * 241.10390 * 19 18 17 22 22 C 1.34777 * 119.99724 * 272.17392 * 21 19 18 23 23 O 1.21613 * 120.00252 * 359.97438 * 22 21 19 24 24 C 1.43208 * 119.99469 * 179.72544 * 22 21 19 25 25 C 9.91371 * 99.74385 * 243.88568 * 3 1 2 26 26 C 9.79664 * 118.21395 * 212.24554 * 13 1 2 27 27 C 1.53005 * 117.49757 * 202.54528 * 26 25 24 28 28 C 1.52998 * 117.50010 * 133.88357 * 26 25 24 29 29 C 1.48825 * 110.96742 * 174.70447 * 16 15 13 30 30 H 1.08993 * 109.46744 * 60.00121 * 1 2 3 31 31 H 1.08994 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46666 * 300.00408 * 1 2 3 33 33 H 1.09001 * 109.46666 * 239.99592 * 2 1 3 34 34 H 1.08999 * 109.47157 * 120.00451 * 2 1 3 35 35 H 1.08999 * 109.47346 * 30.00055 * 4 3 2 36 36 H 1.09006 * 109.47159 * 149.99859 * 4 3 2 37 37 H 0.96997 * 120.00534 * 180.02562 * 8 7 5 38 38 H 1.09003 * 109.46717 * 59.99670 * 15 13 3 39 39 H 1.09001 * 109.46413 * 300.00010 * 15 13 3 40 40 H 1.09001 * 110.40995 * 82.18790 * 17 16 15 41 41 H 1.09000 * 110.51514 * 319.79269 * 17 16 15 42 42 H 1.09002 * 110.31906 * 264.95826 * 18 17 16 43 43 H 1.09002 * 110.40570 * 142.79712 * 18 17 16 44 44 H 0.97000 * 119.99792 * 92.16960 * 21 19 18 45 45 H 1.09005 * 115.55168 * 348.20743 * 26 25 24 46 46 H 1.09000 * 117.49805 * 359.97438 * 27 26 25 47 47 H 1.08990 * 117.50017 * 145.01923 * 27 26 25 48 48 H 1.08997 * 117.50266 * 214.97709 * 28 26 25 49 49 H 1.09006 * 117.49586 * 359.97438 * 28 26 25 50 50 H 1.09003 * 110.45060 * 40.32842 * 29 16 15 51 51 H 1.08996 * 110.49663 * 277.79798 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3430 1.2307 -1.0958 7 6 4.1495 2.3902 -2.8776 8 7 3.3499 3.1271 -3.6172 9 14 5.9139 2.0971 -3.4165 10 1 6.1416 0.6405 -3.5944 11 1 6.1614 2.7970 -4.7026 12 1 6.8412 2.6203 -2.3812 13 6 2.2431 2.0165 1.1671 14 8 2.6470 3.1601 1.1672 15 6 1.9925 1.3059 2.4723 16 7 2.3112 2.2058 3.5888 17 6 3.7753 2.4397 3.6827 18 6 4.0014 2.9111 5.1354 19 6 2.8049 2.3487 5.9302 20 1 3.1531 1.6704 6.7091 21 7 2.0263 3.4412 6.5187 22 6 2.3562 3.9263 7.7321 23 8 3.2998 3.4567 8.3387 24 6 1.5986 4.9982 8.3048 25 6 0.9746 5.8779 8.7733 26 6 0.1956 6.9798 9.3615 27 6 -1.0817 6.6153 10.1208 28 6 -1.1720 7.2847 8.7471 29 6 1.9556 1.5831 4.8929 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.5819 1.6876 -2.0284 36 1 2.0957 3.1410 -1.1385 37 1 3.6758 3.5175 -4.4431 38 1 2.6230 0.4186 2.5298 39 1 0.9446 1.0115 2.5302 40 1 4.0824 3.2139 2.9796 41 1 4.3226 1.5163 3.4932 42 1 4.0094 4.0000 5.1830 43 1 4.9369 2.5089 5.5242 44 1 1.2734 3.8155 6.0350 45 1 0.7793 7.8219 9.7336 46 1 -1.3454 5.5596 10.1844 47 1 -1.3386 7.2177 10.9920 48 1 -1.4883 8.3273 8.7153 49 1 -1.4948 6.6697 7.9070 50 1 2.2174 0.5250 4.8937 51 1 0.8936 1.7131 5.1009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316977657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:40 Heat of formation + Delta-G solvation = -3.484737 kcal Electronic energy + Delta-G solvation = -29703.797905 eV Core-core repulsion = 25604.800016 eV Total energy + Delta-G solvation = -4098.997890 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.34657 -40.66734 -39.18302 -38.49064 -36.87172 -35.53264 -34.89171 -33.85039 -32.32355 -31.53102 -29.77155 -29.32740 -27.36505 -25.76835 -24.74670 -23.95990 -23.29887 -23.20417 -22.33496 -21.60854 -20.09078 -19.68295 -18.61472 -17.92593 -17.79199 -17.57129 -17.32884 -16.68043 -16.48260 -16.09468 -16.04550 -15.83059 -15.63561 -15.16075 -14.92326 -14.63736 -14.31824 -14.13109 -13.63379 -13.58747 -13.47235 -13.30087 -13.25150 -13.09578 -13.07649 -12.93823 -12.72615 -12.62863 -12.47605 -12.42540 -12.33281 -12.21921 -12.09773 -11.95959 -11.79799 -11.71102 -11.53253 -11.11726 -10.73743 -10.64386 -10.55762 -10.24891 -9.44634 -9.37487 -8.21992 -6.36840 0.38185 1.09239 1.34975 1.39218 1.46356 1.91925 1.95148 2.24373 2.31216 2.41291 2.99318 3.04304 3.07180 3.10189 3.45028 3.60660 3.81784 3.84430 4.00999 4.02551 4.07888 4.12891 4.24191 4.32024 4.36050 4.41969 4.45198 4.48800 4.64037 4.69076 4.70542 4.76839 4.82544 4.96004 4.96606 5.01449 5.02982 5.07961 5.08068 5.10767 5.21060 5.23958 5.31697 5.42240 5.59212 5.78506 5.83050 5.93352 6.08014 6.10977 6.32808 6.71689 6.87607 6.96352 7.29719 7.58589 8.84482 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.001927 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.047729 B =14528.185512 C =14637.033719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.495 3.505 14 O -0.582 6.582 15 C 0.041 3.959 16 N -0.510 5.510 17 C 0.038 3.962 18 C -0.128 4.128 19 C 0.147 3.853 20 H 0.107 0.893 21 N -0.691 5.691 22 C 0.637 3.363 23 O -0.566 6.566 24 C -0.267 4.267 25 C -0.027 4.027 26 C -0.092 4.092 27 C -0.148 4.148 28 C -0.152 4.152 29 C 0.032 3.968 30 H 0.035 0.965 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.020 0.980 36 H -0.007 1.007 37 H 0.266 0.734 38 H 0.086 0.914 39 H 0.131 0.869 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.416 0.584 45 H 0.154 0.846 46 H 0.096 0.904 47 H 0.131 0.869 48 H 0.129 0.871 49 H 0.096 0.904 50 H 0.089 0.911 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.585 -2.646 25.500 28.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.284 3.716 14 O -0.461 6.461 15 C -0.090 4.090 16 N -0.235 5.235 17 C -0.090 4.090 18 C -0.167 4.167 19 C 0.042 3.958 20 H 0.125 0.875 21 N -0.342 5.342 22 C 0.425 3.575 23 O -0.447 6.447 24 C -0.270 4.270 25 C -0.029 4.029 26 C -0.109 4.109 27 C -0.185 4.185 28 C -0.189 4.189 29 C -0.095 4.095 30 H 0.054 0.946 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.038 0.962 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.149 0.851 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.104 0.896 44 H 0.253 0.747 45 H 0.171 0.829 46 H 0.114 0.886 47 H 0.149 0.851 48 H 0.147 0.853 49 H 0.115 0.885 50 H 0.107 0.893 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.036 -1.850 25.592 27.932 hybrid contribution 1.353 -0.185 -1.242 1.846 sum -9.683 -2.035 24.350 26.284 Atomic orbital electron populations 1.22153 0.94552 1.03446 1.01707 1.21739 0.95329 0.81363 1.03822 1.48278 1.64335 1.15081 1.06133 1.18632 0.95073 0.91403 0.80579 1.21682 0.97943 1.31871 1.06415 0.92915 1.25862 1.02299 0.94568 0.96547 1.70044 1.37787 1.34172 1.14808 0.85500 0.79153 0.79032 0.77315 1.18391 1.20422 1.20457 1.21202 0.77424 0.86704 0.86316 1.90637 1.47199 1.20482 1.87816 1.22206 1.04963 0.94100 0.87767 1.65207 1.14936 1.41420 1.01955 1.23047 0.88619 1.00440 0.96910 1.22716 0.99077 1.01258 0.93667 1.21775 0.90870 0.87929 0.95205 0.87538 1.45873 1.34254 1.36786 1.17242 1.14778 0.81782 0.79864 0.81088 1.90820 1.30098 1.60803 1.63005 1.20688 1.01932 0.99398 1.04980 1.22200 0.93771 0.92268 0.94710 1.19304 0.89710 0.95308 1.06624 1.23249 0.95649 1.02771 0.96845 1.23261 0.94521 1.03937 0.97174 1.23560 1.01483 0.97896 0.86609 0.94589 0.88641 0.91846 0.91297 0.88074 0.96240 0.98853 0.92474 0.89589 0.85084 0.92566 0.93023 0.92158 0.89574 0.74699 0.82886 0.88587 0.85081 0.85299 0.88538 0.89308 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 10.24 71.98 0.74 -2.95 16 2 C 0.10 2.87 5.93 86.38 0.51 3.38 16 3 N -0.61 -25.09 2.46 -826.14 -2.03 -27.11 16 4 C 0.26 14.36 5.16 85.63 0.44 14.80 16 5 C -0.54 -31.32 9.39 25.60 0.24 -31.08 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.36 5.46 84.66 0.46 0.82 16 8 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 9 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 C 0.50 20.04 7.48 87.66 0.66 20.70 16 14 O -0.58 -30.12 14.42 -3.03 -0.04 -30.17 16 15 C 0.04 1.04 3.85 85.56 0.33 1.37 16 16 N -0.51 -13.18 5.07 -885.28 -4.49 -17.66 16 17 C 0.04 1.09 5.80 86.45 0.50 1.59 16 18 C -0.13 -3.12 6.79 31.49 0.21 -2.90 16 19 C 0.15 2.90 3.38 45.89 0.16 3.05 16 20 H 0.11 2.04 7.60 -2.39 -0.02 2.02 16 21 N -0.69 -14.15 4.98 -445.84 -2.22 -16.37 16 22 C 0.64 16.33 7.65 85.49 0.65 16.98 16 23 O -0.57 -18.33 16.76 -4.07 -0.07 -18.39 16 24 C -0.27 -6.24 13.63 30.00 0.41 -5.83 16 25 C -0.03 -0.51 13.48 31.10 0.42 -0.09 16 26 C -0.09 -1.01 6.21 -12.60 -0.08 -1.09 16 27 C -0.15 -1.04 10.21 30.62 0.31 -0.72 16 28 C -0.15 -1.14 10.21 30.62 0.31 -0.83 16 29 C 0.03 0.52 6.11 86.40 0.53 1.05 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.30 7.22 -2.39 -0.02 1.29 16 33 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 34 H 0.10 2.12 6.44 -2.39 -0.02 2.11 16 35 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 36 H -0.01 -0.42 7.42 -2.38 -0.02 -0.44 16 37 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.09 1.81 7.14 -2.39 -0.02 1.80 16 39 H 0.13 2.52 7.18 -2.39 -0.02 2.50 16 40 H 0.06 2.15 6.91 -2.39 -0.02 2.14 16 41 H 0.05 1.37 7.82 -2.39 -0.02 1.35 16 42 H 0.06 1.68 7.95 -2.39 -0.02 1.66 16 43 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.42 7.32 8.55 -92.71 -0.79 6.53 16 45 H 0.15 1.16 8.14 -2.38 -0.02 1.14 16 46 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 50 H 0.09 1.06 8.00 -2.39 -0.02 1.04 16 51 H 0.11 1.41 8.00 -2.39 -0.02 1.39 16 Total: -1.00 -84.03 426.44 0.42 -83.61 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.15 Total: 16.99 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 6.81 Total: 18.26 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -8.45 Total: -117.67 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -0.11 Total: -48.56 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -84.03 0.42 -83.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316977657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.127 kcal (2) G-P(sol) polarization free energy of solvation -84.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds