Wall clock time and date at job start Wed Apr 1 2020 05:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46894 * 109.47019 * 2 1 4 4 C 1.46902 * 111.00124 * 189.99396 * 3 2 1 5 5 C 1.53006 * 109.46626 * 66.04525 * 4 3 2 6 6 N 1.46500 * 109.46998 * 180.02562 * 5 4 3 7 7 C 1.34769 * 120.00237 * 180.02562 * 6 5 4 8 8 O 1.21353 * 120.00160 * 359.97438 * 7 6 5 9 9 C 1.49452 * 120.00165 * 179.97438 * 7 6 5 10 10 O 1.21346 * 120.00038 * 359.97438 * 9 7 6 11 11 N 1.34779 * 120.00097 * 179.97438 * 9 7 6 12 12 C 1.46500 * 120.00169 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.46993 * 180.02562 * 12 11 9 14 14 C 1.50699 * 109.46861 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00370 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99790 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00257 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99912 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47000 * 60.00005 * 18 16 14 20 20 H 1.48496 * 109.47325 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47112 * 300.00353 * 18 16 14 22 22 C 1.39681 * 111.00265 * 66.04251 * 3 2 1 23 23 C 1.38930 * 120.07369 * 63.67564 * 22 3 2 24 24 C 1.38084 * 119.92467 * 179.79129 * 23 22 3 25 25 C 1.38306 * 120.07257 * 0.48876 * 24 23 22 26 26 C 1.38259 * 120.15036 * 359.74112 * 25 24 23 27 27 C 1.38128 * 120.07479 * 0.02562 * 26 25 24 28 28 C 1.50707 * 120.03486 * 179.97438 * 27 26 25 29 29 H 1.09005 * 109.47409 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47787 * 300.00293 * 1 2 3 31 31 H 1.09003 * 109.47061 * 60.00495 * 1 2 3 32 32 H 1.08998 * 109.47265 * 239.99675 * 2 1 3 33 33 H 1.08999 * 109.46590 * 119.99628 * 2 1 3 34 34 H 1.09000 * 109.47263 * 306.04831 * 4 3 2 35 35 H 1.09001 * 109.47582 * 186.04110 * 4 3 2 36 36 H 1.08993 * 109.46955 * 300.00347 * 5 4 3 37 37 H 1.09000 * 109.47050 * 60.00176 * 5 4 3 38 38 H 0.97010 * 119.99909 * 359.97438 * 6 5 4 39 39 H 0.97004 * 119.99467 * 0.02562 * 11 9 7 40 40 H 1.09000 * 109.46609 * 300.00130 * 12 11 9 41 41 H 1.08996 * 109.46739 * 60.00506 * 12 11 9 42 42 H 1.08996 * 109.47452 * 300.00215 * 13 12 11 43 43 H 1.09000 * 109.47054 * 60.00055 * 13 12 11 44 44 H 0.97002 * 120.00075 * 180.02562 * 17 16 14 45 45 H 1.08002 * 120.03818 * 0.02562 * 23 22 3 46 46 H 1.07997 * 119.95988 * 180.25106 * 24 23 22 47 47 H 1.08001 * 119.92215 * 179.76511 * 25 24 23 48 48 H 1.08005 * 119.96564 * 179.97438 * 26 25 24 49 49 H 1.09001 * 109.47117 * 270.02006 * 28 27 26 50 50 H 1.08997 * 109.47100 * 30.02211 * 28 27 26 51 51 H 1.09007 * 109.46655 * 150.02141 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4685 1.4311 -0.2380 5 6 3.7683 0.9390 -1.6554 6 7 5.2133 0.9844 -1.8926 7 6 5.7135 0.5948 -3.0818 8 8 4.9671 0.2059 -3.9561 9 6 7.1876 0.6417 -3.3240 10 8 7.9340 1.0311 -2.4500 11 7 7.6879 0.2516 -4.5132 12 6 9.1328 0.2971 -4.7504 13 6 9.4326 -0.1944 -6.1679 14 6 10.9190 -0.1483 -6.4117 15 1 11.5834 0.1975 -5.6336 16 6 11.4307 -0.5465 -7.6285 17 7 10.6217 -0.9670 -8.5762 18 14 13.2732 -0.4886 -7.9310 19 1 13.9638 -1.3618 -6.9483 20 1 13.5643 -0.9657 -9.3068 21 1 13.7563 0.9072 -7.7780 22 6 1.6873 2.0334 1.1917 23 6 2.2110 1.5850 2.3978 24 6 1.8838 2.2311 3.5735 25 6 1.0277 3.3171 3.5525 26 6 0.5010 3.7630 2.3544 27 6 0.8279 3.1244 1.1741 28 6 0.2528 3.6108 -0.1312 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.9759 0.7911 0.4838 35 1 3.8226 2.4560 -0.1268 36 1 3.4143 -0.0858 -1.7666 37 1 3.2610 1.5790 -2.3772 38 1 5.8100 1.2957 -1.1939 39 1 7.0911 -0.0592 -5.2119 40 1 9.4872 1.3218 -4.6389 41 1 9.6398 -0.3433 -4.0286 42 1 9.0781 -1.2190 -6.2798 43 1 8.9256 0.4463 -6.8894 44 1 10.9818 -1.2475 -9.4322 45 1 2.8763 0.7344 2.4154 46 1 2.2938 1.8855 4.5110 47 1 0.7705 3.8183 4.4739 48 1 -0.1676 4.6112 2.3415 49 1 -0.6888 3.0979 -0.3269 50 1 0.0762 4.6848 -0.0726 51 1 0.9552 3.4015 -0.9381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323158847.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:37 Heat of formation + Delta-G solvation = -48.764298 kcal Electronic energy + Delta-G solvation = -29197.506531 eV Core-core repulsion = 25096.545172 eV Total energy + Delta-G solvation = -4100.961359 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.74495 -40.31704 -38.38767 -37.50809 -35.49881 -34.68312 -33.08799 -32.85457 -31.62636 -30.76831 -29.81725 -28.29086 -26.78863 -25.55365 -23.92126 -23.83224 -22.67475 -21.58773 -21.04812 -20.78369 -20.14128 -18.27756 -17.52442 -16.80816 -16.38116 -16.27123 -15.98928 -15.82053 -15.75697 -15.07695 -15.02534 -14.82923 -14.64144 -14.42515 -14.12230 -13.92942 -13.73820 -13.50370 -13.40857 -12.98109 -12.71350 -12.57762 -12.45593 -12.32012 -12.23358 -12.02093 -11.83176 -11.64032 -11.60688 -11.51880 -11.24410 -11.16780 -11.04894 -10.68759 -10.39331 -9.80929 -9.46602 -9.37032 -9.24485 -9.19929 -8.98880 -8.92115 -8.70250 -8.41699 -6.10048 -4.13894 0.86845 0.97775 1.60207 2.41946 3.29897 3.30596 3.32066 3.34966 3.38164 3.41993 3.95473 4.32742 4.40473 4.48396 4.50489 4.56069 4.63577 4.70683 4.75636 4.81857 4.92987 5.00289 5.06225 5.13651 5.20945 5.26709 5.33975 5.41496 5.42631 5.52077 5.52249 5.56648 5.61549 5.82686 5.92372 6.00862 6.05810 6.09308 6.17530 6.18878 6.23325 6.41715 6.43699 6.58798 6.68705 6.95346 7.02858 7.45998 7.57635 7.65123 7.86900 7.91269 8.20730 8.33298 8.91403 9.50948 11.01314 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.001487 C = 0.001454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.472798 B =18828.143633 C =19255.062839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 N -0.495 5.495 4 C 0.048 3.952 5 C 0.121 3.879 6 N -0.706 5.706 7 C 0.510 3.490 8 O -0.518 6.518 9 C 0.498 3.502 10 O -0.534 6.534 11 N -0.686 5.686 12 C 0.119 3.881 13 C 0.011 3.989 14 C -0.525 4.525 15 H 0.060 0.940 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.898 3.102 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.090 3.910 23 C -0.144 4.144 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.058 4.058 28 C -0.108 4.108 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.412 0.588 39 H 0.411 0.589 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.263 0.737 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.124 0.876 49 H 0.068 0.932 50 H 0.059 0.941 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.662 6.562 23.799 34.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 N -0.217 5.217 4 C -0.080 4.080 5 C -0.003 4.003 6 N -0.361 5.361 7 C 0.290 3.710 8 O -0.393 6.393 9 C 0.277 3.723 10 O -0.412 6.412 11 N -0.336 5.336 12 C -0.003 4.003 13 C -0.027 4.027 14 C -0.563 4.563 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.004 4.004 23 C -0.164 4.164 24 C -0.137 4.137 25 C -0.137 4.137 26 C -0.137 4.137 27 C -0.059 4.059 28 C -0.164 4.164 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.248 0.752 39 H 0.246 0.754 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.884 6.705 23.156 34.646 hybrid contribution 1.417 -0.481 0.545 1.593 sum -23.467 6.224 23.701 33.929 Atomic orbital electron populations 1.21751 0.94352 1.01736 1.02617 1.22303 0.96712 0.87232 1.01570 1.59492 1.13205 1.16567 1.32424 1.22290 0.87360 1.02508 0.95793 1.21376 0.80042 1.02474 0.96401 1.45620 1.08533 1.66108 1.15864 1.20424 0.89640 0.78289 0.82608 1.90767 1.60339 1.44768 1.43383 1.19951 0.88067 0.80206 0.84080 1.90729 1.59952 1.46716 1.43826 1.46237 1.11113 1.62168 1.14116 1.21940 0.75843 1.01453 1.01064 1.19355 0.97645 0.97142 0.88525 1.20975 0.91500 1.44578 0.99292 0.92218 1.24998 0.98284 0.94950 0.95989 1.69946 1.34847 1.43388 1.04838 0.86553 0.85039 0.78554 0.77260 1.20121 1.21222 1.20106 1.18521 0.98024 0.95749 0.88108 1.21634 1.01026 1.00530 0.93233 1.21003 0.98551 0.96290 0.97847 1.21168 0.97544 0.96939 0.98024 1.21044 1.00500 1.00271 0.91909 1.19854 0.96057 0.94132 0.95818 1.20693 1.01163 1.00027 0.94562 0.92097 0.92758 0.91610 0.89688 0.94251 0.93405 0.89517 0.90813 0.89883 0.75193 0.75359 0.91843 0.91859 0.95650 0.95631 0.92714 0.86368 0.86180 0.86075 0.85807 0.91368 0.92249 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C 0.05 0.32 5.43 -3.83 -0.02 0.30 16 3 N -0.50 -3.61 3.44 -171.11 -0.59 -4.20 16 4 C 0.05 0.35 4.66 -3.82 -0.02 0.33 16 5 C 0.12 1.09 5.62 -4.04 -0.02 1.07 16 6 N -0.71 -7.81 5.55 -60.73 -0.34 -8.15 16 7 C 0.51 7.50 7.89 -11.59 -0.09 7.41 16 8 O -0.52 -8.65 16.48 5.49 0.09 -8.56 16 9 C 0.50 8.49 7.89 -11.58 -0.09 8.39 16 10 O -0.53 -9.99 16.48 5.50 0.09 -9.90 16 11 N -0.69 -12.45 5.55 -60.73 -0.34 -12.79 16 12 C 0.12 2.47 5.61 -4.04 -0.02 2.45 16 13 C 0.01 0.27 5.09 -27.89 -0.14 0.12 16 14 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 18 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.09 0.69 3.53 -83.79 -0.30 0.39 16 23 C -0.14 -1.06 8.58 -39.38 -0.34 -1.39 16 24 C -0.12 -0.79 10.04 -39.61 -0.40 -1.19 16 25 C -0.12 -0.75 10.04 -39.55 -0.40 -1.15 16 26 C -0.12 -0.79 9.70 -39.61 -0.38 -1.17 16 27 C -0.06 -0.43 5.89 -104.42 -0.61 -1.04 16 28 C -0.11 -0.70 9.77 36.01 0.35 -0.35 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.38 7.38 -51.93 -0.38 0.00 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.57 6.08 -51.93 -0.32 0.26 16 33 H 0.04 0.26 7.15 -51.93 -0.37 -0.11 16 34 H 0.05 0.33 7.49 -51.93 -0.39 -0.06 16 35 H 0.09 0.65 8.06 -51.93 -0.42 0.23 16 36 H 0.07 0.68 6.36 -51.93 -0.33 0.35 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.41 4.07 7.95 -40.82 -0.32 3.75 16 39 H 0.41 7.12 7.94 -40.82 -0.32 6.79 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.12 0.79 7.13 -52.49 -0.37 0.41 16 46 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 47 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 48 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 51 H 0.08 0.60 7.46 -51.92 -0.39 0.21 16 LS Contribution 422.27 15.07 6.36 6.36 Total: -1.00 -31.49 422.27 -9.76 -41.25 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -8.23 Total: 4.61 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -2.53 Total: 0.47 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.53 Total: -50.43 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.18 Total: -18.47 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -31.49 -9.76 -41.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323158847.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.517 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds