Wall clock time and date at job start Wed Apr 1 2020 05:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46894 * 109.47019 * 2 1 4 4 C 1.46902 * 111.00124 * 189.99396 * 3 2 1 5 5 C 1.53006 * 109.46626 * 66.04525 * 4 3 2 6 6 N 1.46500 * 109.46998 * 180.02562 * 5 4 3 7 7 C 1.34769 * 120.00237 * 180.02562 * 6 5 4 8 8 O 1.21353 * 120.00160 * 359.97438 * 7 6 5 9 9 C 1.49452 * 120.00165 * 179.97438 * 7 6 5 10 10 O 1.21346 * 120.00038 * 359.97438 * 9 7 6 11 11 N 1.34779 * 120.00097 * 179.97438 * 9 7 6 12 12 C 1.46500 * 120.00169 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.46993 * 180.02562 * 12 11 9 14 14 C 1.50699 * 109.46861 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00370 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99790 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00257 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99912 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47000 * 60.00005 * 18 16 14 20 20 H 1.48496 * 109.47325 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47112 * 300.00353 * 18 16 14 22 22 C 1.39681 * 111.00265 * 66.04251 * 3 2 1 23 23 C 1.38930 * 120.07369 * 63.67564 * 22 3 2 24 24 C 1.38084 * 119.92467 * 179.79129 * 23 22 3 25 25 C 1.38306 * 120.07257 * 0.48876 * 24 23 22 26 26 C 1.38259 * 120.15036 * 359.74112 * 25 24 23 27 27 C 1.38128 * 120.07479 * 0.02562 * 26 25 24 28 28 C 1.50707 * 120.03486 * 179.97438 * 27 26 25 29 29 H 1.09005 * 109.47409 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47787 * 300.00293 * 1 2 3 31 31 H 1.09003 * 109.47061 * 60.00495 * 1 2 3 32 32 H 1.08998 * 109.47265 * 239.99675 * 2 1 3 33 33 H 1.08999 * 109.46590 * 119.99628 * 2 1 3 34 34 H 1.09000 * 109.47263 * 306.04831 * 4 3 2 35 35 H 1.09001 * 109.47582 * 186.04110 * 4 3 2 36 36 H 1.08993 * 109.46955 * 300.00347 * 5 4 3 37 37 H 1.09000 * 109.47050 * 60.00176 * 5 4 3 38 38 H 0.97010 * 119.99909 * 359.97438 * 6 5 4 39 39 H 0.97004 * 119.99467 * 0.02562 * 11 9 7 40 40 H 1.09000 * 109.46609 * 300.00130 * 12 11 9 41 41 H 1.08996 * 109.46739 * 60.00506 * 12 11 9 42 42 H 1.08996 * 109.47452 * 300.00215 * 13 12 11 43 43 H 1.09000 * 109.47054 * 60.00055 * 13 12 11 44 44 H 0.97002 * 120.00075 * 180.02562 * 17 16 14 45 45 H 1.08002 * 120.03818 * 0.02562 * 23 22 3 46 46 H 1.07997 * 119.95988 * 180.25106 * 24 23 22 47 47 H 1.08001 * 119.92215 * 179.76511 * 25 24 23 48 48 H 1.08005 * 119.96564 * 179.97438 * 26 25 24 49 49 H 1.09001 * 109.47117 * 270.02006 * 28 27 26 50 50 H 1.08997 * 109.47100 * 30.02211 * 28 27 26 51 51 H 1.09007 * 109.46655 * 150.02141 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4685 1.4311 -0.2380 5 6 3.7683 0.9390 -1.6554 6 7 5.2133 0.9844 -1.8926 7 6 5.7135 0.5948 -3.0818 8 8 4.9671 0.2059 -3.9561 9 6 7.1876 0.6417 -3.3240 10 8 7.9340 1.0311 -2.4500 11 7 7.6879 0.2516 -4.5132 12 6 9.1328 0.2971 -4.7504 13 6 9.4326 -0.1944 -6.1679 14 6 10.9190 -0.1483 -6.4117 15 1 11.5834 0.1975 -5.6336 16 6 11.4307 -0.5465 -7.6285 17 7 10.6217 -0.9670 -8.5762 18 14 13.2732 -0.4886 -7.9310 19 1 13.9638 -1.3618 -6.9483 20 1 13.5643 -0.9657 -9.3068 21 1 13.7563 0.9072 -7.7780 22 6 1.6873 2.0334 1.1917 23 6 2.2110 1.5850 2.3978 24 6 1.8838 2.2311 3.5735 25 6 1.0277 3.3171 3.5525 26 6 0.5010 3.7630 2.3544 27 6 0.8279 3.1244 1.1741 28 6 0.2528 3.6108 -0.1312 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.9759 0.7911 0.4838 35 1 3.8226 2.4560 -0.1268 36 1 3.4143 -0.0858 -1.7666 37 1 3.2610 1.5790 -2.3772 38 1 5.8100 1.2957 -1.1939 39 1 7.0911 -0.0592 -5.2119 40 1 9.4872 1.3218 -4.6389 41 1 9.6398 -0.3433 -4.0286 42 1 9.0781 -1.2190 -6.2798 43 1 8.9256 0.4463 -6.8894 44 1 10.9818 -1.2475 -9.4322 45 1 2.8763 0.7344 2.4154 46 1 2.2938 1.8855 4.5110 47 1 0.7705 3.8183 4.4739 48 1 -0.1676 4.6112 2.3415 49 1 -0.6888 3.0979 -0.3269 50 1 0.0762 4.6848 -0.0726 51 1 0.9552 3.4015 -0.9381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323158847.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:36 Heat of formation + Delta-G solvation = -68.734104 kcal Electronic energy + Delta-G solvation = -29198.372486 eV Core-core repulsion = 25096.545172 eV Total energy + Delta-G solvation = -4101.827314 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.74732 -41.13271 -39.67328 -38.15135 -36.92453 -35.91711 -34.79725 -33.58207 -32.19498 -31.70599 -31.40422 -28.99027 -27.54307 -27.04174 -25.22284 -24.36253 -23.61583 -22.79740 -22.13861 -21.61147 -21.15950 -19.56946 -18.58696 -18.18454 -17.65625 -17.28699 -16.82155 -16.60746 -16.56427 -16.42784 -16.11972 -16.07367 -15.84125 -15.28630 -15.21007 -14.86917 -14.56263 -14.40629 -14.29455 -14.23940 -13.98282 -13.33653 -13.26416 -13.17779 -13.04151 -12.92449 -12.86036 -12.76491 -12.58417 -12.54337 -12.37821 -12.26891 -12.14971 -12.11321 -11.73264 -11.68369 -11.45534 -10.74131 -10.60555 -10.36300 -10.19892 -9.72620 -9.53563 -9.43370 -8.22755 -6.34152 0.30712 0.36101 0.47443 1.25751 1.44003 1.45999 1.54157 2.10828 2.38397 2.51712 2.80177 2.95348 3.12131 3.43972 3.68642 3.91154 3.99898 4.02630 4.13456 4.22483 4.28055 4.37718 4.38948 4.45342 4.47834 4.54365 4.61104 4.64895 4.81173 4.81797 4.84430 4.88195 4.92781 4.95120 5.03884 5.07503 5.07696 5.10861 5.31543 5.42371 5.43428 5.51930 5.55205 5.60682 5.67944 5.75350 5.85358 5.90073 5.94780 6.13229 6.33722 6.43846 6.68828 6.79669 6.91440 7.35365 8.88916 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.001487 C = 0.001454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.472798 B =18828.143633 C =19255.062839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.047 3.953 3 N -0.497 5.497 4 C 0.056 3.944 5 C 0.125 3.875 6 N -0.686 5.686 7 C 0.517 3.483 8 O -0.540 6.540 9 C 0.501 3.499 10 O -0.549 6.549 11 N -0.688 5.688 12 C 0.138 3.862 13 C 0.018 3.982 14 C -0.547 4.547 15 H 0.065 0.935 16 C 0.006 3.994 17 N -0.927 5.927 18 Si 0.968 3.032 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.267 1.267 22 C 0.079 3.921 23 C -0.154 4.154 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.072 4.072 28 C -0.103 4.103 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.420 0.580 39 H 0.415 0.585 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.008 0.992 43 H 0.008 0.992 44 H 0.265 0.735 45 H 0.122 0.878 46 H 0.135 0.865 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.737 7.105 25.426 36.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.079 4.079 3 N -0.219 5.219 4 C -0.071 4.071 5 C 0.002 3.998 6 N -0.340 5.340 7 C 0.297 3.703 8 O -0.417 6.417 9 C 0.281 3.719 10 O -0.428 6.428 11 N -0.340 5.340 12 C 0.015 3.985 13 C -0.020 4.020 14 C -0.585 4.585 15 H 0.083 0.917 16 C -0.193 4.193 17 N -0.567 5.567 18 Si 0.792 3.208 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.015 4.015 23 C -0.174 4.174 24 C -0.145 4.145 25 C -0.141 4.141 26 C -0.144 4.144 27 C -0.073 4.073 28 C -0.160 4.160 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.258 0.742 39 H 0.251 0.749 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.074 0.926 45 H 0.140 0.860 46 H 0.152 0.848 47 H 0.158 0.842 48 H 0.157 0.843 49 H 0.088 0.912 50 H 0.086 0.914 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.981 7.265 24.833 35.965 hybrid contribution 1.355 -0.624 0.122 1.497 sum -23.626 6.641 24.955 35.000 Atomic orbital electron populations 1.21693 0.94065 1.02109 1.01997 1.22331 0.96957 0.87023 1.01606 1.59467 1.12942 1.16824 1.32640 1.22178 0.87743 1.02574 0.94602 1.21458 0.78304 1.02628 0.97451 1.45564 1.09679 1.64146 1.14629 1.19900 0.88124 0.78826 0.83484 1.90770 1.60230 1.46328 1.44335 1.20306 0.89237 0.79140 0.83176 1.90718 1.60743 1.47169 1.44123 1.46075 1.10045 1.62845 1.14991 1.21483 0.77567 1.00965 0.98475 1.19182 0.96485 0.95818 0.90492 1.21427 0.92926 1.44470 0.99691 0.91681 1.25912 1.03216 0.94445 0.95745 1.70069 1.36990 1.44285 1.05321 0.85458 0.79120 0.78954 0.77262 1.19212 1.20860 1.19214 1.18607 0.98547 0.96093 0.88221 1.21751 1.01339 1.00872 0.93440 1.21260 0.98567 0.96359 0.98280 1.21453 0.97093 0.96813 0.98753 1.21295 1.00637 1.00647 0.91784 1.20050 0.96383 0.94381 0.96460 1.20650 1.00854 1.00617 0.93875 0.91235 0.93515 0.91991 0.89702 0.94059 0.92573 0.89488 0.90564 0.90415 0.74238 0.74905 0.91994 0.91962 0.97375 0.97389 0.92586 0.86027 0.84755 0.84183 0.84289 0.91155 0.91357 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.89 71.98 0.71 -0.97 16 2 C 0.05 0.59 5.43 86.30 0.47 1.06 16 3 N -0.50 -6.79 3.44 -695.27 -2.39 -9.19 16 4 C 0.06 0.75 4.66 86.31 0.40 1.15 16 5 C 0.12 2.10 5.62 86.38 0.49 2.58 16 6 N -0.69 -14.25 5.55 -464.41 -2.58 -16.83 16 7 C 0.52 14.75 7.89 87.27 0.69 15.44 16 8 O -0.54 -17.72 16.48 -3.26 -0.05 -17.78 16 9 C 0.50 16.76 7.89 87.27 0.69 17.44 16 10 O -0.55 -19.99 16.48 -3.24 -0.05 -20.05 16 11 N -0.69 -24.98 5.55 -464.42 -2.58 -27.56 16 12 C 0.14 5.76 5.61 86.38 0.48 6.24 16 13 C 0.02 0.90 5.09 29.85 0.15 1.05 16 14 C -0.55 -30.14 9.11 25.60 0.23 -29.91 16 15 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 16 C 0.01 0.32 5.46 84.66 0.46 0.78 16 17 N -0.93 -54.71 13.29 21.45 0.28 -54.42 16 18 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 C 0.08 1.14 3.53 38.21 0.13 1.27 16 23 C -0.15 -2.08 8.58 22.40 0.19 -1.88 16 24 C -0.13 -1.50 10.04 22.25 0.22 -1.27 16 25 C -0.12 -1.35 10.04 22.29 0.22 -1.13 16 26 C -0.13 -1.48 9.70 22.25 0.22 -1.27 16 27 C -0.07 -1.00 5.89 -19.73 -0.12 -1.12 16 28 C -0.10 -1.26 9.77 71.24 0.70 -0.56 16 29 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.05 0.63 7.38 -2.39 -0.02 0.61 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.06 6.08 -2.39 -0.01 1.05 16 33 H 0.04 0.50 7.15 -2.39 -0.02 0.49 16 34 H 0.06 0.67 7.49 -2.39 -0.02 0.65 16 35 H 0.09 1.18 8.06 -2.39 -0.02 1.16 16 36 H 0.08 1.31 6.36 -2.39 -0.02 1.30 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.42 7.60 7.95 -92.70 -0.74 6.86 16 39 H 0.41 14.52 7.94 -92.71 -0.74 13.78 16 40 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 45 H 0.12 1.47 7.13 -2.91 -0.02 1.45 16 46 H 0.13 1.12 8.06 -2.91 -0.02 1.10 16 47 H 0.14 0.93 8.06 -2.91 -0.02 0.90 16 48 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 49 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 51 H 0.07 1.00 7.46 -2.38 -0.02 0.98 16 Total: -1.00 -66.29 422.27 0.47 -65.81 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -0.53 Total: 25.82 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 6.35 Total: 8.90 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -7.26 Total: -108.00 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -0.11 Total: -37.82 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -66.29 0.47 -65.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323158847.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.921 kcal (2) G-P(sol) polarization free energy of solvation -66.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds