Wall clock time and date at job start Wed Apr 1 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47174 * 2 1 4 4 C 1.34768 * 119.99965 * 263.10415 * 3 2 1 5 5 O 1.21289 * 119.99979 * 176.17565 * 4 3 2 6 6 C 1.50701 * 120.00143 * 356.17503 * 4 3 2 7 7 H 1.08994 * 109.47175 * 326.07687 * 6 4 3 8 8 C 1.52999 * 109.46950 * 86.07799 * 6 4 3 9 9 O 1.42900 * 109.47163 * 206.07594 * 6 4 3 10 10 C 1.42897 * 114.00123 * 150.00051 * 9 6 4 11 11 C 1.50702 * 109.47466 * 179.97438 * 10 9 6 12 12 C 1.38644 * 120.79301 * 269.72512 * 11 10 9 13 13 C 1.38205 * 119.16285 * 179.75274 * 12 11 10 14 14 N 1.31868 * 120.76549 * 0.52896 * 13 12 11 15 15 C 1.31869 * 121.72158 * 359.74130 * 14 13 12 16 16 C 1.38199 * 120.76899 * 359.97438 * 15 14 13 17 17 C 1.46498 * 119.99672 * 83.10261 * 3 2 1 18 18 H 1.09001 * 110.64515 * 22.45219 * 17 3 2 19 19 C 1.55155 * 110.72047 * 259.11538 * 17 3 2 20 20 C 1.54915 * 101.58214 * 277.14192 * 19 17 3 21 21 N 1.47425 * 104.82845 * 322.99078 * 20 19 17 22 22 C 1.36936 * 125.64366 * 204.16665 * 21 20 19 23 23 H 1.07997 * 119.99977 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00363 * 359.95665 * 22 21 20 25 25 N 1.31624 * 119.99848 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00221 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47029 * 59.99789 * 26 24 22 28 28 H 1.48497 * 109.47099 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47123 * 299.99940 * 26 24 22 30 30 C 1.47021 * 108.70733 * 24.12765 * 21 20 19 31 31 H 1.09000 * 109.47286 * 306.79418 * 1 2 3 32 32 H 1.09006 * 109.47159 * 186.79019 * 1 2 3 33 33 H 1.09004 * 109.47174 * 66.79779 * 1 2 3 34 34 H 1.09001 * 109.46925 * 119.99957 * 2 1 3 35 35 H 1.09000 * 109.46743 * 239.99754 * 2 1 3 36 36 H 1.09006 * 109.47057 * 176.01322 * 8 6 4 37 37 H 1.09002 * 109.47184 * 296.00871 * 8 6 4 38 38 H 1.08997 * 109.47876 * 56.01256 * 8 6 4 39 39 H 1.09001 * 109.46933 * 299.99770 * 10 9 6 40 40 H 1.09000 * 109.47276 * 60.00225 * 10 9 6 41 41 H 1.07998 * 120.41667 * 359.97438 * 12 11 10 42 42 H 1.08009 * 119.61967 * 180.28939 * 13 12 11 43 43 H 1.08003 * 119.61437 * 180.02562 * 15 14 13 44 44 H 1.08002 * 120.42316 * 180.02562 * 16 15 14 45 45 H 1.09004 * 111.00455 * 35.21338 * 19 17 3 46 46 H 1.08996 * 111.00696 * 159.06532 * 19 17 3 47 47 H 1.09003 * 110.36394 * 204.15513 * 20 19 17 48 48 H 1.08996 * 110.45713 * 81.88000 * 20 19 17 49 49 H 0.97003 * 119.99944 * 180.02562 * 25 24 22 50 50 H 1.08993 * 109.88077 * 239.52250 * 30 21 20 51 51 H 1.08998 * 110.01029 * 118.42849 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3751 1.9698 -1.1587 5 8 2.7133 3.1345 -1.1683 6 6 2.3538 1.1808 -2.4425 7 1 2.6256 0.1454 -2.2372 8 6 0.9494 1.2291 -3.0475 9 8 3.2891 1.7450 -3.3639 10 6 3.8575 0.7966 -4.2691 11 6 4.8232 1.4972 -5.1899 12 6 4.3948 2.0279 -6.3970 13 6 5.3081 2.6680 -7.2131 14 7 6.5747 2.7675 -6.8600 15 6 7.0184 2.2700 -5.7222 16 6 6.1623 1.6215 -4.8525 17 6 2.1188 2.1225 1.2596 18 1 2.1843 1.4372 2.1047 19 6 0.9173 3.0902 1.4244 20 6 1.3840 4.3103 0.5918 21 7 2.8345 4.4031 0.8389 22 6 3.5934 5.5367 0.7194 23 1 4.6532 5.5010 0.9241 24 6 3.0007 6.7315 0.3347 25 7 1.7092 6.7748 0.0843 26 14 4.0361 8.2776 0.1710 27 1 5.0952 8.0586 -0.8466 28 1 3.1722 9.4096 -0.2502 29 1 4.6642 8.5936 1.4790 30 6 3.3310 3.0774 1.2358 31 1 -0.3634 0.6155 0.8229 32 1 -0.3634 -1.0205 0.1215 33 1 -0.3634 0.4049 -0.9446 34 1 1.8933 -0.5138 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 0.9509 0.7186 -4.0107 37 1 0.2472 0.7353 -2.3758 38 1 0.6494 2.2676 -3.1873 39 1 4.3855 0.0275 -3.7053 40 1 3.0644 0.3355 -4.8577 41 1 3.3598 1.9452 -6.6940 42 1 4.9815 3.0883 -8.1530 43 1 8.0629 2.3713 -5.4666 44 1 6.5316 1.2165 -3.9219 45 1 0.0075 2.6579 1.0078 46 1 0.7752 3.3622 2.4703 47 1 0.8824 5.2162 0.9323 48 1 1.1895 4.1453 -0.4679 49 1 1.2950 7.6096 -0.1848 50 1 3.7798 3.1314 2.2276 51 1 4.0675 2.7237 0.5145 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481773802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:21 Heat of formation + Delta-G solvation = 27.474854 kcal Electronic energy + Delta-G solvation = -32353.981315 eV Core-core repulsion = 28256.325934 eV Total energy + Delta-G solvation = -4097.655381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.39012 -40.09299 -38.04773 -36.04234 -35.41169 -33.46984 -32.24764 -31.31408 -30.87286 -30.11884 -28.88933 -27.06377 -26.98336 -24.57199 -23.82536 -23.56712 -23.17987 -22.12626 -20.65897 -19.91067 -18.31749 -17.42654 -16.86997 -16.64716 -16.57172 -16.41395 -15.72010 -15.44498 -15.21973 -14.92170 -14.28182 -14.24273 -13.99235 -13.85495 -13.72570 -13.53735 -13.19653 -13.15257 -12.72703 -12.68421 -12.52429 -12.07677 -11.92548 -11.79636 -11.64913 -11.53878 -11.41245 -11.29500 -10.85040 -10.77207 -10.65871 -10.60687 -9.95154 -9.91263 -9.89297 -9.79567 -9.60433 -9.59320 -9.32030 -9.24108 -8.69701 -8.36890 -7.94861 -6.44122 -5.35001 -2.70868 1.02375 1.04651 3.01030 3.22001 3.56710 3.60852 3.62308 3.64452 4.01897 4.36599 4.49626 4.53951 4.64715 4.74043 4.76135 4.90062 4.98941 5.00573 5.06025 5.15028 5.17192 5.23336 5.31601 5.42728 5.49776 5.51217 5.62676 5.64544 5.66612 5.67827 5.76358 5.82273 5.83618 5.86533 6.03441 6.12102 6.18260 6.31081 6.38534 6.57552 6.58574 6.68744 6.77718 6.89464 7.01022 7.29465 7.83397 7.85679 7.87610 7.97811 8.14433 8.66331 8.91783 9.53311 10.15235 10.82245 11.69316 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007717 B = 0.004318 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3627.349137 B = 6482.469507 C = 9181.340999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 N -0.609 5.609 4 C 0.481 3.519 5 O -0.425 6.425 6 C 0.073 3.927 7 H 0.074 0.926 8 C -0.174 4.174 9 O -0.345 6.345 10 C 0.099 3.901 11 C -0.042 4.042 12 C -0.151 4.151 13 C 0.095 3.905 14 N -0.484 5.484 15 C 0.096 3.904 16 C -0.148 4.148 17 C 0.137 3.863 18 H 0.081 0.919 19 C -0.161 4.161 20 C 0.163 3.837 21 N -0.576 5.576 22 C -0.198 4.198 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.923 5.923 26 Si 0.907 3.093 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.288 1.288 30 C 0.142 3.858 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.135 0.865 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.136 0.864 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.095 0.905 48 H 0.025 0.975 49 H 0.246 0.754 50 H 0.018 0.982 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.665 -21.090 -7.526 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.018 4.018 3 N -0.348 5.348 4 C 0.265 3.735 5 O -0.291 6.291 6 C 0.012 3.988 7 H 0.092 0.908 8 C -0.232 4.232 9 O -0.263 6.263 10 C 0.022 3.978 11 C -0.050 4.050 12 C -0.171 4.171 13 C -0.062 4.062 14 N -0.193 5.193 15 C -0.060 4.060 16 C -0.168 4.168 17 C 0.034 3.966 18 H 0.099 0.901 19 C -0.200 4.200 20 C 0.038 3.962 21 N -0.301 5.301 22 C -0.327 4.327 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.574 5.574 26 Si 0.739 3.261 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.215 1.215 30 C 0.014 3.986 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.153 0.847 42 H 0.174 0.826 43 H 0.174 0.826 44 H 0.154 0.846 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.112 0.888 48 H 0.043 0.957 49 H 0.057 0.943 50 H 0.036 0.964 51 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.167 -19.544 -8.171 21.184 hybrid contribution -0.224 -0.109 0.373 0.449 sum -0.057 -19.653 -7.798 21.144 Atomic orbital electron populations 1.22431 0.96234 1.01836 1.03171 1.21526 0.94451 0.83433 1.02437 1.47870 1.67039 1.13265 1.06640 1.20166 0.80872 0.88569 0.83910 1.91180 1.39887 1.13652 1.84370 1.22061 0.90681 0.96526 0.89552 0.90810 1.22353 0.95313 1.04379 1.01130 1.88207 1.58870 1.32915 1.46353 1.21372 0.94503 0.90941 0.90968 1.19963 0.94015 0.96822 0.94194 1.22064 1.01299 0.98699 0.95015 1.22753 0.88583 0.95473 0.99398 1.67656 1.16834 1.17218 1.17589 1.22764 1.00337 0.93420 0.89527 1.22097 0.93780 1.00176 1.00778 1.22070 0.97909 0.92918 0.83710 0.90137 1.23546 0.96067 0.99233 1.01193 1.21904 0.84496 0.94438 0.95377 1.44118 1.04506 1.02615 1.78839 1.18910 0.91053 0.85481 1.37300 0.91310 1.24639 0.96058 0.97547 1.02648 1.69809 1.08745 1.24715 1.54081 0.86250 0.79045 0.83242 0.77593 1.21610 1.21839 1.21543 1.21331 0.93412 0.87405 0.96404 0.91593 0.92036 0.91997 0.90882 0.90893 0.91872 0.90498 0.90710 0.92094 0.92019 0.84665 0.82623 0.82563 0.84608 0.92497 0.91813 0.88775 0.95729 0.94313 0.96390 0.96061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 10.10 37.16 0.38 -1.25 16 2 C 0.11 1.06 5.91 -4.04 -0.02 1.03 16 3 N -0.61 -9.38 2.52 -164.03 -0.41 -9.80 16 4 C 0.48 8.87 5.96 -10.99 -0.07 8.81 16 5 O -0.42 -10.64 10.26 -12.85 -0.13 -10.77 16 6 C 0.07 1.02 2.37 -27.88 -0.07 0.95 16 7 H 0.07 0.77 5.75 -51.93 -0.30 0.47 16 8 C -0.17 -2.08 9.48 37.16 0.35 -1.73 16 9 O -0.35 -5.57 9.64 -53.63 -0.52 -6.09 16 10 C 0.10 1.12 5.92 36.01 0.21 1.33 16 11 C -0.04 -0.51 5.55 -104.32 -0.58 -1.09 16 12 C -0.15 -1.73 9.82 -39.44 -0.39 -2.12 16 13 C 0.09 1.11 11.18 -17.55 -0.20 0.92 16 14 N -0.48 -6.48 10.36 -13.25 -0.14 -6.62 16 15 C 0.10 1.17 11.18 -17.55 -0.20 0.97 16 16 C -0.15 -1.79 9.82 -39.44 -0.39 -2.18 16 17 C 0.14 2.42 3.67 -66.10 -0.24 2.18 16 18 H 0.08 1.16 7.96 -51.93 -0.41 0.75 16 19 C -0.16 -3.15 6.75 -24.58 -0.17 -3.32 16 20 C 0.16 4.25 4.96 -2.53 -0.01 4.24 16 21 N -0.58 -15.90 2.18 -170.07 -0.37 -16.27 16 22 C -0.20 -6.04 10.27 -15.06 -0.15 -6.19 16 23 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 24 C -0.01 -0.45 5.49 -17.43 -0.10 -0.54 16 25 N -0.92 -29.13 10.09 55.49 0.56 -28.57 16 26 Si 0.91 24.13 29.55 -169.99 -5.02 19.10 16 27 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 28 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 29 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 30 C 0.14 3.20 5.96 -3.06 -0.02 3.18 16 31 H 0.07 0.70 6.95 -51.93 -0.36 0.34 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.60 5.22 -51.93 -0.27 0.32 16 34 H 0.07 0.62 8.01 -51.93 -0.42 0.21 16 35 H 0.07 0.60 5.57 -51.93 -0.29 0.31 16 36 H 0.06 0.59 7.80 -51.93 -0.40 0.19 16 37 H 0.08 0.78 4.82 -51.93 -0.25 0.53 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 0.57 8.05 -51.93 -0.42 0.15 16 40 H 0.06 0.54 7.76 -51.93 -0.40 0.14 16 41 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 43 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 44 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 45 H 0.06 1.00 6.94 -51.93 -0.36 0.64 16 46 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.09 2.79 5.87 -51.93 -0.31 2.48 16 48 H 0.02 0.72 5.96 -51.93 -0.31 0.41 16 49 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 50 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.02 0.52 6.80 -51.93 -0.35 0.17 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -38.86 394.70 -9.52 -48.37 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.78 Total: -0.50 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -1.65 Total: 5.19 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.36 Total: -61.26 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.65 Total: -16.86 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.02 Total: 19.10 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.86 -9.52 -48.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481773802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.849 kcal (2) G-P(sol) polarization free energy of solvation -38.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds