Wall clock time and date at job start Wed Apr 1 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47174 * 2 1 4 4 C 1.34768 * 119.99965 * 263.10415 * 3 2 1 5 5 O 1.21289 * 119.99979 * 176.17565 * 4 3 2 6 6 C 1.50701 * 120.00143 * 356.17503 * 4 3 2 7 7 H 1.08994 * 109.47175 * 326.07687 * 6 4 3 8 8 C 1.52999 * 109.46950 * 86.07799 * 6 4 3 9 9 O 1.42900 * 109.47163 * 206.07594 * 6 4 3 10 10 C 1.42897 * 114.00123 * 150.00051 * 9 6 4 11 11 C 1.50702 * 109.47466 * 179.97438 * 10 9 6 12 12 C 1.38644 * 120.79301 * 269.72512 * 11 10 9 13 13 C 1.38205 * 119.16285 * 179.75274 * 12 11 10 14 14 N 1.31868 * 120.76549 * 0.52896 * 13 12 11 15 15 C 1.31869 * 121.72158 * 359.74130 * 14 13 12 16 16 C 1.38199 * 120.76899 * 359.97438 * 15 14 13 17 17 C 1.46498 * 119.99672 * 83.10261 * 3 2 1 18 18 H 1.09001 * 110.64515 * 22.45219 * 17 3 2 19 19 C 1.55155 * 110.72047 * 259.11538 * 17 3 2 20 20 C 1.54915 * 101.58214 * 277.14192 * 19 17 3 21 21 N 1.47425 * 104.82845 * 322.99078 * 20 19 17 22 22 C 1.36936 * 125.64366 * 204.16665 * 21 20 19 23 23 H 1.07997 * 119.99977 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00363 * 359.95665 * 22 21 20 25 25 N 1.31624 * 119.99848 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00221 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47029 * 59.99789 * 26 24 22 28 28 H 1.48497 * 109.47099 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47123 * 299.99940 * 26 24 22 30 30 C 1.47021 * 108.70733 * 24.12765 * 21 20 19 31 31 H 1.09000 * 109.47286 * 306.79418 * 1 2 3 32 32 H 1.09006 * 109.47159 * 186.79019 * 1 2 3 33 33 H 1.09004 * 109.47174 * 66.79779 * 1 2 3 34 34 H 1.09001 * 109.46925 * 119.99957 * 2 1 3 35 35 H 1.09000 * 109.46743 * 239.99754 * 2 1 3 36 36 H 1.09006 * 109.47057 * 176.01322 * 8 6 4 37 37 H 1.09002 * 109.47184 * 296.00871 * 8 6 4 38 38 H 1.08997 * 109.47876 * 56.01256 * 8 6 4 39 39 H 1.09001 * 109.46933 * 299.99770 * 10 9 6 40 40 H 1.09000 * 109.47276 * 60.00225 * 10 9 6 41 41 H 1.07998 * 120.41667 * 359.97438 * 12 11 10 42 42 H 1.08009 * 119.61967 * 180.28939 * 13 12 11 43 43 H 1.08003 * 119.61437 * 180.02562 * 15 14 13 44 44 H 1.08002 * 120.42316 * 180.02562 * 16 15 14 45 45 H 1.09004 * 111.00455 * 35.21338 * 19 17 3 46 46 H 1.08996 * 111.00696 * 159.06532 * 19 17 3 47 47 H 1.09003 * 110.36394 * 204.15513 * 20 19 17 48 48 H 1.08996 * 110.45713 * 81.88000 * 20 19 17 49 49 H 0.97003 * 119.99944 * 180.02562 * 25 24 22 50 50 H 1.08993 * 109.88077 * 239.52250 * 30 21 20 51 51 H 1.08998 * 110.01029 * 118.42849 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3751 1.9698 -1.1587 5 8 2.7133 3.1345 -1.1683 6 6 2.3538 1.1808 -2.4425 7 1 2.6256 0.1454 -2.2372 8 6 0.9494 1.2291 -3.0475 9 8 3.2891 1.7450 -3.3639 10 6 3.8575 0.7966 -4.2691 11 6 4.8232 1.4972 -5.1899 12 6 4.3948 2.0279 -6.3970 13 6 5.3081 2.6680 -7.2131 14 7 6.5747 2.7675 -6.8600 15 6 7.0184 2.2700 -5.7222 16 6 6.1623 1.6215 -4.8525 17 6 2.1188 2.1225 1.2596 18 1 2.1843 1.4372 2.1047 19 6 0.9173 3.0902 1.4244 20 6 1.3840 4.3103 0.5918 21 7 2.8345 4.4031 0.8389 22 6 3.5934 5.5367 0.7194 23 1 4.6532 5.5010 0.9241 24 6 3.0007 6.7315 0.3347 25 7 1.7092 6.7748 0.0843 26 14 4.0361 8.2776 0.1710 27 1 5.0952 8.0586 -0.8466 28 1 3.1722 9.4096 -0.2502 29 1 4.6642 8.5936 1.4790 30 6 3.3310 3.0774 1.2358 31 1 -0.3634 0.6155 0.8229 32 1 -0.3634 -1.0205 0.1215 33 1 -0.3634 0.4049 -0.9446 34 1 1.8933 -0.5138 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 0.9509 0.7186 -4.0107 37 1 0.2472 0.7353 -2.3758 38 1 0.6494 2.2676 -3.1873 39 1 4.3855 0.0275 -3.7053 40 1 3.0644 0.3355 -4.8577 41 1 3.3598 1.9452 -6.6940 42 1 4.9815 3.0883 -8.1530 43 1 8.0629 2.3713 -5.4666 44 1 6.5316 1.2165 -3.9219 45 1 0.0075 2.6579 1.0078 46 1 0.7752 3.3622 2.4703 47 1 0.8824 5.2162 0.9323 48 1 1.1895 4.1453 -0.4679 49 1 1.2950 7.6096 -0.1848 50 1 3.7798 3.1314 2.2276 51 1 4.0675 2.7237 0.5145 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481773802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:20 Heat of formation + Delta-G solvation = 1.427567 kcal Electronic energy + Delta-G solvation = -32355.110810 eV Core-core repulsion = 28256.325934 eV Total energy + Delta-G solvation = -4098.784876 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.60828 -41.11160 -39.24031 -37.67113 -36.73075 -34.56800 -34.07049 -32.19127 -32.06952 -31.29964 -30.71190 -28.75602 -27.88616 -26.53186 -25.15523 -24.45966 -24.05057 -23.02619 -22.12138 -21.87872 -19.61789 -18.83303 -18.40801 -17.94260 -17.51627 -17.46573 -16.96581 -16.57323 -16.51194 -16.40149 -15.94889 -15.55276 -15.38430 -14.93742 -14.77867 -14.65059 -14.48805 -14.16608 -14.11062 -13.87769 -13.50387 -13.40377 -13.34229 -13.16877 -12.98359 -12.84783 -12.77424 -12.59105 -12.54717 -12.38589 -12.07518 -12.04057 -11.83042 -11.68746 -11.57096 -11.23230 -10.88723 -10.75608 -10.66823 -10.51468 -10.13101 -9.99894 -9.38417 -8.64552 -7.65791 -5.02896 0.10622 0.15659 1.38339 1.44284 1.49168 1.85225 1.95783 2.53371 2.67390 3.09169 3.40727 3.51788 3.56271 3.68448 3.73981 3.85092 3.87953 3.98073 4.07735 4.09880 4.16448 4.21222 4.22094 4.34173 4.35664 4.40149 4.45737 4.56407 4.65376 4.72171 4.75464 4.78850 4.83438 4.84023 4.94587 4.96659 5.02640 5.08517 5.10232 5.16983 5.27689 5.30825 5.47932 5.59178 5.71303 5.87317 5.88367 5.97188 6.10043 6.43423 6.66952 6.95246 7.23786 7.60896 7.96320 8.60456 9.35807 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007717 B = 0.004318 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3627.349137 B = 6482.469507 C = 9181.340999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.097 3.903 3 N -0.604 5.604 4 C 0.472 3.528 5 O -0.508 6.508 6 C 0.079 3.921 7 H 0.119 0.881 8 C -0.167 4.167 9 O -0.391 6.391 10 C 0.097 3.903 11 C -0.060 4.060 12 C -0.157 4.157 13 C 0.083 3.917 14 N -0.510 5.510 15 C 0.082 3.918 16 C -0.161 4.161 17 C 0.151 3.849 18 H 0.131 0.869 19 C -0.144 4.144 20 C 0.171 3.829 21 N -0.593 5.593 22 C -0.214 4.214 23 H 0.065 0.935 24 C -0.074 4.074 25 N -0.949 5.949 26 Si 0.970 3.030 27 H -0.292 1.292 28 H -0.292 1.292 29 H -0.271 1.271 30 C 0.137 3.863 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.031 0.969 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.156 0.844 42 H 0.180 0.820 43 H 0.175 0.825 44 H 0.147 0.853 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.051 0.949 48 H -0.012 1.012 49 H 0.239 0.761 50 H 0.026 0.974 51 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.200 -24.913 -7.049 25.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.024 4.024 3 N -0.340 5.340 4 C 0.258 3.742 5 O -0.380 6.380 6 C 0.019 3.981 7 H 0.137 0.863 8 C -0.224 4.224 9 O -0.310 6.310 10 C 0.021 3.979 11 C -0.068 4.068 12 C -0.176 4.176 13 C -0.074 4.074 14 N -0.220 5.220 15 C -0.074 4.074 16 C -0.180 4.180 17 C 0.047 3.953 18 H 0.149 0.851 19 C -0.183 4.183 20 C 0.046 3.954 21 N -0.317 5.317 22 C -0.344 4.344 23 H 0.083 0.917 24 C -0.265 4.265 25 N -0.600 5.600 26 Si 0.800 3.200 27 H -0.220 1.220 28 H -0.218 1.218 29 H -0.197 1.197 30 C 0.011 3.989 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.050 0.950 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.174 0.826 42 H 0.197 0.803 43 H 0.192 0.808 44 H 0.165 0.835 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.006 0.994 49 H 0.048 0.952 50 H 0.044 0.956 51 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -0.378 -23.464 -7.667 24.687 hybrid contribution -0.028 0.995 0.187 1.013 sum -0.405 -22.468 -7.479 23.684 Atomic orbital electron populations 1.22401 0.95301 1.03540 1.02127 1.21971 0.95121 0.80202 1.05132 1.48006 1.65925 1.15104 1.05006 1.21151 0.79032 0.88064 0.85951 1.91150 1.43832 1.17265 1.85794 1.22114 0.91444 0.97369 0.87188 0.86341 1.22335 0.94489 1.02289 1.03291 1.88162 1.59674 1.35657 1.47488 1.21613 0.95228 0.90358 0.90702 1.20319 0.94472 0.97197 0.94839 1.22365 1.02296 0.98149 0.94802 1.23222 0.88301 0.95410 1.00436 1.67678 1.17856 1.18125 1.18371 1.23142 1.01463 0.93375 0.89429 1.22337 0.94115 1.00349 1.01241 1.21959 0.93885 0.92870 0.86543 0.85106 1.23350 0.97716 0.96814 1.00420 1.21554 0.84001 0.95556 0.94315 1.44350 1.05147 1.03779 1.78452 1.19256 0.91338 0.87098 1.36749 0.91748 1.25453 0.97316 1.00554 1.03221 1.70118 1.10128 1.24717 1.55083 0.85259 0.77342 0.79503 0.77932 1.21954 1.21808 1.19713 1.21496 0.95386 0.86499 0.95556 0.93059 0.88748 0.92827 0.88116 0.88325 0.88679 0.88358 0.95009 0.89930 0.89079 0.82590 0.80331 0.80751 0.83474 0.90296 0.90845 0.93116 0.99434 0.95172 0.95637 0.98077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 10.10 71.98 0.73 -1.64 16 2 C 0.10 1.44 5.91 86.38 0.51 1.95 16 3 N -0.60 -17.05 2.52 -791.25 -2.00 -19.05 16 4 C 0.47 17.20 5.96 87.66 0.52 17.72 16 5 O -0.51 -26.68 10.26 14.54 0.15 -26.54 16 6 C 0.08 2.05 2.37 29.85 0.07 2.12 16 7 H 0.12 1.91 5.75 -2.39 -0.01 1.89 16 8 C -0.17 -3.63 9.48 71.98 0.68 -2.95 16 9 O -0.39 -12.32 9.64 -131.38 -1.27 -13.58 16 10 C 0.10 1.96 5.92 71.24 0.42 2.38 16 11 C -0.06 -1.43 5.55 -19.67 -0.11 -1.54 16 12 C -0.16 -3.47 9.82 22.36 0.22 -3.25 16 13 C 0.08 1.92 11.18 84.68 0.95 2.86 16 14 N -0.51 -13.77 10.36 -195.84 -2.03 -15.79 16 15 C 0.08 2.01 11.18 84.68 0.95 2.95 16 16 C -0.16 -3.85 9.82 22.36 0.22 -3.63 16 17 C 0.15 5.01 3.67 46.18 0.17 5.17 16 18 H 0.13 3.11 7.96 -2.39 -0.02 3.09 16 19 C -0.14 -5.51 6.75 31.99 0.22 -5.29 16 20 C 0.17 9.35 4.96 86.86 0.43 9.78 16 21 N -0.59 -34.08 2.18 -691.99 -1.51 -35.58 16 22 C -0.21 -13.63 10.27 84.03 0.86 -12.77 16 23 H 0.06 4.01 7.83 -2.91 -0.02 3.98 16 24 C -0.07 -4.73 5.49 84.86 0.47 -4.26 16 25 N -0.95 -63.19 10.09 21.65 0.22 -62.97 16 26 Si 0.97 51.58 29.55 68.60 2.03 53.61 16 27 H -0.29 -15.54 7.11 99.48 0.71 -14.84 16 28 H -0.29 -15.36 7.11 99.48 0.71 -14.65 16 29 H -0.27 -13.54 7.11 99.48 0.71 -12.83 16 30 C 0.14 6.23 5.96 86.73 0.52 6.75 16 31 H 0.05 0.87 6.95 -2.39 -0.02 0.85 16 32 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.05 0.82 5.22 -2.38 -0.01 0.81 16 34 H 0.10 1.05 8.01 -2.39 -0.02 1.03 16 35 H 0.10 1.00 5.57 -2.39 -0.01 0.99 16 36 H 0.09 1.44 7.80 -2.38 -0.02 1.42 16 37 H 0.10 1.67 4.82 -2.39 -0.01 1.66 16 38 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 1.27 8.05 -2.39 -0.02 1.26 16 40 H 0.09 1.27 7.76 -2.39 -0.02 1.25 16 41 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.18 3.03 8.06 -2.91 -0.02 3.00 16 43 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 44 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 45 H 0.08 2.66 6.94 -2.39 -0.02 2.65 16 46 H 0.07 2.67 8.14 -2.39 -0.02 2.66 16 47 H 0.05 3.19 5.87 -2.39 -0.01 3.18 16 48 H -0.01 -0.75 5.96 -2.39 -0.01 -0.76 16 49 H 0.24 15.48 8.31 -92.71 -0.77 14.71 16 50 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.00 0.07 6.80 -2.39 -0.02 0.05 16 Total: -1.00 -94.87 394.70 4.35 -90.52 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.93 Total: 13.01 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 7.82 Total: 16.37 kcal Atomic # 7 Polarization: -128.08 SS G_CDS: -5.32 Total: -133.39 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -1.12 Total: -40.12 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.03 Total: 53.61 kcal Total: -94.87 4.35 -90.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481773802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.951 kcal (2) G-P(sol) polarization free energy of solvation -94.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds