Wall clock time and date at job start Wed Apr 1 2020 06:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47180 * 2 1 4 4 C 1.34776 * 119.99946 * 264.34608 * 3 2 1 5 5 O 1.21285 * 119.99930 * 184.47012 * 4 3 2 6 6 C 1.50697 * 120.00114 * 4.46485 * 4 3 2 7 7 H 1.08998 * 109.47485 * 47.08807 * 6 4 3 8 8 C 1.52998 * 109.47567 * 287.08264 * 6 4 3 9 9 O 1.42910 * 109.46878 * 167.08543 * 6 4 3 10 10 C 1.42904 * 113.99650 * 210.00196 * 9 6 4 11 11 C 1.50701 * 109.46593 * 179.97438 * 10 9 6 12 12 C 1.38644 * 120.79088 * 269.71442 * 11 10 9 13 13 C 1.38201 * 119.16528 * 179.75682 * 12 11 10 14 14 N 1.31868 * 120.76201 * 0.54027 * 13 12 11 15 15 C 1.31874 * 121.72503 * 359.73212 * 14 13 12 16 16 C 1.38198 * 120.76274 * 359.97438 * 15 14 13 17 17 C 1.46506 * 119.99932 * 84.33675 * 3 2 1 18 18 H 1.09001 * 110.63559 * 356.86208 * 17 3 2 19 19 C 1.55153 * 110.71696 * 120.00173 * 17 3 2 20 20 C 1.54912 * 101.61456 * 153.84803 * 19 17 3 21 21 N 1.47473 * 104.80984 * 323.04256 * 20 19 17 22 22 C 1.36936 * 125.62834 * 204.06864 * 21 20 19 23 23 H 1.07992 * 119.99911 * 180.02562 * 22 21 20 24 24 C 1.38816 * 119.99902 * 0.02562 * 22 21 20 25 25 N 1.31620 * 119.99860 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99788 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46937 * 60.00594 * 26 24 22 28 28 H 1.48505 * 109.47124 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47619 * 300.00420 * 26 24 22 30 30 C 1.47016 * 108.72254 * 24.06946 * 21 20 19 31 31 H 1.09005 * 109.46649 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46908 * 299.99196 * 1 2 3 33 33 H 1.08995 * 109.47819 * 59.99773 * 1 2 3 34 34 H 1.09004 * 109.47290 * 240.00444 * 2 1 3 35 35 H 1.08995 * 109.47819 * 120.00226 * 2 1 3 36 36 H 1.08999 * 109.46563 * 49.56535 * 8 6 4 37 37 H 1.08997 * 109.47624 * 169.56448 * 8 6 4 38 38 H 1.09003 * 109.47054 * 289.57078 * 8 6 4 39 39 H 1.09000 * 109.46683 * 299.99962 * 10 9 6 40 40 H 1.08998 * 109.46988 * 60.00294 * 10 9 6 41 41 H 1.08008 * 120.41599 * 0.02562 * 12 11 10 42 42 H 1.08001 * 119.62046 * 180.29226 * 13 12 11 43 43 H 1.08005 * 119.61680 * 180.02562 * 15 14 13 44 44 H 1.08007 * 120.42008 * 180.02562 * 16 15 14 45 45 H 1.09002 * 111.00885 * 271.94032 * 19 17 3 46 46 H 1.09001 * 111.00520 * 35.75676 * 19 17 3 47 47 H 1.08993 * 110.36808 * 81.85036 * 20 19 17 48 48 H 1.09000 * 110.36571 * 204.16995 * 20 19 17 49 49 H 0.97005 * 119.99526 * 179.97438 * 25 24 22 50 50 H 1.08996 * 109.88608 * 239.55807 * 30 21 20 51 51 H 1.09004 * 110.00912 * 118.45793 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3514 1.9782 -1.1615 5 8 2.8317 3.0919 -1.1550 6 6 2.1271 1.2620 -2.4683 7 1 1.1234 0.8371 -2.4822 8 6 3.1575 0.1411 -2.6191 9 8 2.2678 2.1869 -3.5486 10 6 1.4698 1.8714 -4.6914 11 6 1.6952 2.9070 -5.7627 12 6 0.9052 4.0445 -5.8278 13 6 1.1446 4.9749 -6.8212 14 7 2.1036 4.7850 -7.7062 15 6 2.8707 3.7128 -7.6781 16 6 2.6940 2.7423 -6.7102 17 6 2.1445 2.1136 1.2626 18 1 1.7837 1.5092 2.0949 19 6 3.6140 2.5516 1.4986 20 6 3.4273 3.7965 2.4015 21 7 2.2149 4.4584 1.8849 22 6 1.9083 5.7853 2.0275 23 1 0.9913 6.1753 1.6112 24 6 2.7761 6.6290 2.7071 25 7 3.8939 6.1537 3.2140 26 14 2.3582 8.4393 2.9009 27 1 1.0758 8.5751 3.6373 28 1 3.4393 9.1185 3.6594 29 1 2.2275 9.0636 1.5600 30 6 1.3902 3.4580 1.1917 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.1779 -0.4583 -1.7090 37 1 2.8858 -0.4909 -3.4645 38 1 4.1429 0.5743 -2.7910 39 1 1.7506 0.8888 -5.0705 40 1 0.4171 1.8647 -4.4088 41 1 0.1153 4.2035 -5.1084 42 1 0.5366 5.8659 -6.8759 43 1 3.6467 3.5920 -8.4197 44 1 3.3257 1.8665 -6.6922 45 1 4.1752 1.7739 2.0166 46 1 4.0976 2.8194 0.5591 47 1 3.2816 3.4945 3.4385 48 1 4.2881 4.4597 2.3160 49 1 4.5005 6.7434 3.6886 50 1 1.2500 3.7500 0.1509 51 1 0.4222 3.3664 1.6845 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481773804.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:29 Heat of formation + Delta-G solvation = 6.066329 kcal Electronic energy + Delta-G solvation = -31512.572664 eV Core-core repulsion = 27413.988939 eV Total energy + Delta-G solvation = -4098.583724 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.52102 -40.19983 -38.14672 -36.50128 -35.60223 -33.64870 -32.42143 -31.41508 -31.19274 -30.31840 -28.86157 -27.14576 -27.07420 -24.93151 -24.05660 -23.67622 -22.77726 -22.21213 -21.04652 -20.05556 -18.74243 -17.50731 -17.08237 -16.80890 -16.69747 -16.50218 -15.81840 -15.43064 -15.35006 -14.87100 -14.62757 -14.39564 -14.02349 -13.95937 -13.86999 -13.78598 -13.38696 -13.28046 -13.07284 -12.71195 -12.55164 -12.30424 -12.19278 -11.93270 -11.80609 -11.76788 -11.42329 -11.37008 -10.99277 -10.89818 -10.76344 -10.69660 -10.38468 -10.07356 -10.03045 -9.96060 -9.72118 -9.69511 -9.44916 -9.34397 -8.93622 -8.52051 -8.28673 -6.66832 -5.51298 -2.91370 0.91138 0.94457 2.79727 2.89836 3.48811 3.49628 3.53522 3.55345 3.85455 4.26607 4.32641 4.43184 4.49971 4.62018 4.66065 4.75688 4.79521 4.84743 4.90886 5.02526 5.06222 5.09676 5.15455 5.33113 5.40013 5.40446 5.49396 5.52497 5.57123 5.59535 5.65404 5.66645 5.73045 5.84165 5.89634 5.93456 6.05388 6.07670 6.32504 6.47468 6.59723 6.62216 6.69656 6.81833 6.86299 7.25086 7.58389 7.69493 7.75918 7.75961 7.99447 8.49067 8.53250 9.35896 9.97204 10.62290 11.52795 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008660 B = 0.003264 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.578060 B = 8575.652998 C =10919.267530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.091 3.909 3 N -0.605 5.605 4 C 0.506 3.494 5 O -0.481 6.481 6 C 0.071 3.929 7 H 0.082 0.918 8 C -0.178 4.178 9 O -0.346 6.346 10 C 0.099 3.901 11 C -0.043 4.043 12 C -0.148 4.148 13 C 0.097 3.903 14 N -0.483 5.483 15 C 0.094 3.906 16 C -0.152 4.152 17 C 0.137 3.863 18 H 0.088 0.912 19 C -0.155 4.155 20 C 0.158 3.842 21 N -0.595 5.595 22 C -0.214 4.214 23 H 0.074 0.926 24 C -0.013 4.013 25 N -0.924 5.924 26 Si 0.913 3.087 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.286 1.286 30 C 0.133 3.867 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.137 0.863 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.135 0.865 45 H 0.052 0.948 46 H 0.078 0.922 47 H 0.009 0.991 48 H 0.107 0.893 49 H 0.251 0.749 50 H 0.037 0.963 51 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 -18.822 -16.673 25.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.033 4.033 3 N -0.341 5.341 4 C 0.291 3.709 5 O -0.352 6.352 6 C 0.009 3.991 7 H 0.100 0.900 8 C -0.235 4.235 9 O -0.264 6.264 10 C 0.022 3.978 11 C -0.052 4.052 12 C -0.168 4.168 13 C -0.059 4.059 14 N -0.192 5.192 15 C -0.063 4.063 16 C -0.172 4.172 17 C 0.034 3.966 18 H 0.106 0.894 19 C -0.195 4.195 20 C 0.033 3.967 21 N -0.321 5.321 22 C -0.342 4.342 23 H 0.092 0.908 24 C -0.208 4.208 25 N -0.574 5.574 26 Si 0.744 3.256 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.006 3.994 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.155 0.845 42 H 0.175 0.825 43 H 0.174 0.826 44 H 0.153 0.847 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.027 0.973 48 H 0.124 0.876 49 H 0.061 0.939 50 H 0.055 0.945 51 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -5.359 -17.206 -17.217 24.924 hybrid contribution -0.668 -0.109 0.884 1.113 sum -6.027 -17.316 -16.333 24.555 Atomic orbital electron populations 1.22241 0.96017 1.01930 1.02928 1.21864 0.94599 0.83233 1.03560 1.47954 1.66025 1.13596 1.06536 1.20159 0.79603 0.86795 0.84371 1.90860 1.39753 1.18324 1.86277 1.22011 0.99907 0.90132 0.87032 0.90033 1.22421 1.00520 0.97616 1.02965 1.88180 1.65489 1.49745 1.22970 1.21397 0.95319 0.95694 0.85377 1.19950 0.95092 0.95430 0.94687 1.22135 1.00943 0.94141 0.99559 1.22795 0.94394 0.98400 0.90345 1.67668 1.04859 1.21524 1.25163 1.22762 0.97187 0.89286 0.97042 1.22058 0.97954 1.01241 0.95934 1.22184 0.98223 0.93068 0.83079 0.89362 1.23430 0.94298 0.99574 1.02188 1.21849 0.92959 0.90118 0.91785 1.44277 1.20166 1.04270 1.63399 1.19004 1.03664 0.82795 1.28785 0.90800 1.24749 0.97052 0.98200 1.00793 1.69789 1.11861 1.33520 1.42186 0.86162 0.76998 0.84825 0.77592 1.21352 1.21612 1.21234 1.21460 0.92886 0.88092 0.96914 0.91673 0.91761 0.92671 0.89706 0.90257 0.90154 0.91493 0.90603 0.91864 0.91867 0.84475 0.82453 0.82612 0.84674 0.92922 0.90297 0.97277 0.87575 0.93856 0.94484 0.96791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.18 37.16 0.38 -1.06 16 2 C 0.09 0.84 5.51 -4.04 -0.02 0.82 16 3 N -0.61 -8.81 2.54 -164.03 -0.42 -9.22 16 4 C 0.51 8.39 6.09 -10.99 -0.07 8.32 16 5 O -0.48 -10.89 12.92 -14.02 -0.18 -11.07 16 6 C 0.07 0.84 2.31 -27.89 -0.06 0.77 16 7 H 0.08 0.74 6.59 -51.93 -0.34 0.40 16 8 C -0.18 -1.58 9.05 37.16 0.34 -1.24 16 9 O -0.35 -4.81 9.54 -54.80 -0.52 -5.34 16 10 C 0.10 0.96 5.92 36.01 0.21 1.17 16 11 C -0.04 -0.47 5.55 -104.32 -0.58 -1.05 16 12 C -0.15 -1.61 9.82 -39.44 -0.39 -2.00 16 13 C 0.10 1.07 11.18 -17.55 -0.20 0.88 16 14 N -0.48 -5.84 10.36 -13.25 -0.14 -5.97 16 15 C 0.09 0.96 11.18 -17.55 -0.20 0.76 16 16 C -0.15 -1.48 9.82 -39.44 -0.39 -1.87 16 17 C 0.14 2.50 3.45 -66.09 -0.23 2.27 16 18 H 0.09 1.42 7.96 -51.93 -0.41 1.00 16 19 C -0.16 -3.25 6.43 -24.58 -0.16 -3.40 16 20 C 0.16 4.12 5.89 -2.50 -0.01 4.10 16 21 N -0.60 -16.48 3.40 -170.04 -0.58 -17.05 16 22 C -0.21 -6.41 10.27 -15.06 -0.15 -6.56 16 23 H 0.07 2.15 7.83 -52.49 -0.41 1.74 16 24 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 25 N -0.92 -28.40 10.09 55.49 0.56 -27.84 16 26 Si 0.91 23.36 29.55 -169.99 -5.02 18.34 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 30 C 0.13 3.05 6.47 -3.07 -0.02 3.03 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.47 7.42 -51.93 -0.39 0.09 16 34 H 0.08 0.60 4.11 -51.93 -0.21 0.38 16 35 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 36 H 0.08 0.61 5.53 -51.93 -0.29 0.32 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.45 8.10 -51.93 -0.42 0.02 16 40 H 0.06 0.52 8.04 -51.93 -0.42 0.10 16 41 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 42 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 44 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 45 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.08 1.83 6.09 -51.93 -0.32 1.51 16 47 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 48 H 0.11 3.14 5.88 -51.93 -0.31 2.84 16 49 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.04 0.92 5.98 -51.93 -0.31 0.61 16 51 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 403.49 15.07 6.08 6.08 Total: -1.00 -38.11 403.49 -9.89 -48.00 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -8.03 Total: -0.38 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -1.64 Total: 4.45 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.57 Total: -60.09 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.70 Total: -16.41 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.02 Total: 18.34 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.11 -9.89 -48.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481773804.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.066 kcal (2) G-P(sol) polarization free energy of solvation -38.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds