Wall clock time and date at job start Wed Apr 1 2020 06:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47180 * 2 1 4 4 C 1.34776 * 119.99946 * 264.34608 * 3 2 1 5 5 O 1.21285 * 119.99930 * 184.47012 * 4 3 2 6 6 C 1.50697 * 120.00114 * 4.46485 * 4 3 2 7 7 H 1.08998 * 109.47485 * 47.08807 * 6 4 3 8 8 C 1.52998 * 109.47567 * 287.08264 * 6 4 3 9 9 O 1.42910 * 109.46878 * 167.08543 * 6 4 3 10 10 C 1.42904 * 113.99650 * 210.00196 * 9 6 4 11 11 C 1.50701 * 109.46593 * 179.97438 * 10 9 6 12 12 C 1.38644 * 120.79088 * 269.71442 * 11 10 9 13 13 C 1.38201 * 119.16528 * 179.75682 * 12 11 10 14 14 N 1.31868 * 120.76201 * 0.54027 * 13 12 11 15 15 C 1.31874 * 121.72503 * 359.73212 * 14 13 12 16 16 C 1.38198 * 120.76274 * 359.97438 * 15 14 13 17 17 C 1.46506 * 119.99932 * 84.33675 * 3 2 1 18 18 H 1.09001 * 110.63559 * 356.86208 * 17 3 2 19 19 C 1.55153 * 110.71696 * 120.00173 * 17 3 2 20 20 C 1.54912 * 101.61456 * 153.84803 * 19 17 3 21 21 N 1.47473 * 104.80984 * 323.04256 * 20 19 17 22 22 C 1.36936 * 125.62834 * 204.06864 * 21 20 19 23 23 H 1.07992 * 119.99911 * 180.02562 * 22 21 20 24 24 C 1.38816 * 119.99902 * 0.02562 * 22 21 20 25 25 N 1.31620 * 119.99860 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99788 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46937 * 60.00594 * 26 24 22 28 28 H 1.48505 * 109.47124 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47619 * 300.00420 * 26 24 22 30 30 C 1.47016 * 108.72254 * 24.06946 * 21 20 19 31 31 H 1.09005 * 109.46649 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46908 * 299.99196 * 1 2 3 33 33 H 1.08995 * 109.47819 * 59.99773 * 1 2 3 34 34 H 1.09004 * 109.47290 * 240.00444 * 2 1 3 35 35 H 1.08995 * 109.47819 * 120.00226 * 2 1 3 36 36 H 1.08999 * 109.46563 * 49.56535 * 8 6 4 37 37 H 1.08997 * 109.47624 * 169.56448 * 8 6 4 38 38 H 1.09003 * 109.47054 * 289.57078 * 8 6 4 39 39 H 1.09000 * 109.46683 * 299.99962 * 10 9 6 40 40 H 1.08998 * 109.46988 * 60.00294 * 10 9 6 41 41 H 1.08008 * 120.41599 * 0.02562 * 12 11 10 42 42 H 1.08001 * 119.62046 * 180.29226 * 13 12 11 43 43 H 1.08005 * 119.61680 * 180.02562 * 15 14 13 44 44 H 1.08007 * 120.42008 * 180.02562 * 16 15 14 45 45 H 1.09002 * 111.00885 * 271.94032 * 19 17 3 46 46 H 1.09001 * 111.00520 * 35.75676 * 19 17 3 47 47 H 1.08993 * 110.36808 * 81.85036 * 20 19 17 48 48 H 1.09000 * 110.36571 * 204.16995 * 20 19 17 49 49 H 0.97005 * 119.99526 * 179.97438 * 25 24 22 50 50 H 1.08996 * 109.88608 * 239.55807 * 30 21 20 51 51 H 1.09004 * 110.00912 * 118.45793 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3514 1.9782 -1.1615 5 8 2.8317 3.0919 -1.1550 6 6 2.1271 1.2620 -2.4683 7 1 1.1234 0.8371 -2.4822 8 6 3.1575 0.1411 -2.6191 9 8 2.2678 2.1869 -3.5486 10 6 1.4698 1.8714 -4.6914 11 6 1.6952 2.9070 -5.7627 12 6 0.9052 4.0445 -5.8278 13 6 1.1446 4.9749 -6.8212 14 7 2.1036 4.7850 -7.7062 15 6 2.8707 3.7128 -7.6781 16 6 2.6940 2.7423 -6.7102 17 6 2.1445 2.1136 1.2626 18 1 1.7837 1.5092 2.0949 19 6 3.6140 2.5516 1.4986 20 6 3.4273 3.7965 2.4015 21 7 2.2149 4.4584 1.8849 22 6 1.9083 5.7853 2.0275 23 1 0.9913 6.1753 1.6112 24 6 2.7761 6.6290 2.7071 25 7 3.8939 6.1537 3.2140 26 14 2.3582 8.4393 2.9009 27 1 1.0758 8.5751 3.6373 28 1 3.4393 9.1185 3.6594 29 1 2.2275 9.0636 1.5600 30 6 1.3902 3.4580 1.1917 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.1779 -0.4583 -1.7090 37 1 2.8858 -0.4909 -3.4645 38 1 4.1429 0.5743 -2.7910 39 1 1.7506 0.8888 -5.0705 40 1 0.4171 1.8647 -4.4088 41 1 0.1153 4.2035 -5.1084 42 1 0.5366 5.8659 -6.8759 43 1 3.6467 3.5920 -8.4197 44 1 3.3257 1.8665 -6.6922 45 1 4.1752 1.7739 2.0166 46 1 4.0976 2.8194 0.5591 47 1 3.2816 3.4945 3.4385 48 1 4.2881 4.4597 2.3160 49 1 4.5005 6.7434 3.6886 50 1 1.2500 3.7500 0.1509 51 1 0.4222 3.3664 1.6845 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481773804.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:28 Heat of formation + Delta-G solvation = -19.261691 kcal Electronic energy + Delta-G solvation = -31513.670969 eV Core-core repulsion = 27413.988939 eV Total energy + Delta-G solvation = -4099.682030 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.62422 -41.09954 -39.27108 -38.09602 -36.85612 -34.66591 -34.16586 -32.22247 -32.17373 -31.56470 -30.61207 -28.77062 -27.89648 -26.63522 -25.37186 -24.44913 -23.61203 -22.99588 -22.47572 -22.10590 -19.98560 -18.96921 -18.34092 -18.08398 -17.52446 -17.46618 -16.90407 -16.57810 -16.50226 -16.35589 -16.03853 -15.68631 -15.47540 -14.91423 -14.84604 -14.73585 -14.57753 -14.28743 -14.08016 -13.97928 -13.71992 -13.50683 -13.43562 -13.17408 -13.07552 -12.95272 -12.76871 -12.67080 -12.53288 -12.29816 -12.23754 -12.12626 -12.07804 -11.86610 -11.70364 -11.36320 -10.93857 -10.77341 -10.74937 -10.49811 -10.23614 -10.11779 -9.59019 -8.87331 -7.78288 -5.21865 0.11413 0.16854 1.40540 1.46135 1.51877 1.64155 1.80029 2.47693 2.63723 3.05559 3.29797 3.42592 3.55670 3.70840 3.74475 3.74907 3.89816 3.90116 4.04406 4.04639 4.09142 4.12135 4.17762 4.25466 4.36554 4.41449 4.44604 4.54174 4.62230 4.66989 4.71449 4.72752 4.83804 4.85130 4.86248 4.94340 4.96544 5.02229 5.04325 5.13753 5.25722 5.31985 5.40093 5.43725 5.62581 5.72696 5.75792 5.79748 6.03806 6.29602 6.52948 6.96938 7.09362 7.32013 7.77431 8.41355 9.23354 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008660 B = 0.003264 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.578060 B = 8575.652998 C =10919.267530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.083 3.917 3 N -0.598 5.598 4 C 0.496 3.504 5 O -0.557 6.557 6 C 0.077 3.923 7 H 0.117 0.883 8 C -0.172 4.172 9 O -0.386 6.386 10 C 0.097 3.903 11 C -0.060 4.060 12 C -0.164 4.164 13 C 0.081 3.919 14 N -0.510 5.510 15 C 0.083 3.917 16 C -0.152 4.152 17 C 0.155 3.845 18 H 0.121 0.879 19 C -0.140 4.140 20 C 0.161 3.839 21 N -0.619 5.619 22 C -0.240 4.240 23 H 0.072 0.928 24 C -0.068 4.068 25 N -0.949 5.949 26 Si 0.982 3.018 27 H -0.272 1.272 28 H -0.288 1.288 29 H -0.284 1.284 30 C 0.132 3.868 31 H 0.097 0.903 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.051 0.949 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.142 0.858 42 H 0.172 0.828 43 H 0.182 0.818 44 H 0.162 0.838 45 H 0.087 0.913 46 H 0.052 0.948 47 H -0.002 1.002 48 H 0.063 0.937 49 H 0.247 0.753 50 H 0.013 0.987 51 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.063 -22.322 -17.481 29.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.038 4.038 3 N -0.333 5.333 4 C 0.284 3.716 5 O -0.434 6.434 6 C 0.017 3.983 7 H 0.134 0.866 8 C -0.229 4.229 9 O -0.305 6.305 10 C 0.021 3.979 11 C -0.068 4.068 12 C -0.184 4.184 13 C -0.075 4.075 14 N -0.220 5.220 15 C -0.073 4.073 16 C -0.172 4.172 17 C 0.051 3.949 18 H 0.139 0.861 19 C -0.179 4.179 20 C 0.035 3.965 21 N -0.345 5.345 22 C -0.369 4.369 23 H 0.089 0.911 24 C -0.260 4.260 25 N -0.598 5.598 26 Si 0.809 3.191 27 H -0.198 1.198 28 H -0.213 1.213 29 H -0.211 1.211 30 C 0.006 3.994 31 H 0.116 0.884 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.133 0.867 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.071 0.929 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.160 0.840 42 H 0.189 0.811 43 H 0.199 0.801 44 H 0.180 0.820 45 H 0.106 0.894 46 H 0.071 0.929 47 H 0.016 0.984 48 H 0.082 0.918 49 H 0.057 0.943 50 H 0.031 0.969 51 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -6.494 -20.788 -18.036 28.278 hybrid contribution -0.346 0.958 1.095 1.495 sum -6.840 -19.831 -16.941 26.964 Atomic orbital electron populations 1.22226 0.95035 1.03711 1.01877 1.22312 0.95350 0.80019 1.06099 1.48021 1.65212 1.15353 1.04671 1.21236 0.77878 0.86124 0.86412 1.90832 1.43237 1.21787 1.87494 1.22094 1.02664 0.89663 0.83918 0.86572 1.22429 0.98278 0.96772 1.05377 1.88134 1.66626 1.51391 1.24385 1.21617 0.95656 0.96711 0.83901 1.20298 0.95326 0.95779 0.95417 1.22333 1.01586 0.94645 0.99803 1.23093 0.94699 0.99163 0.90499 1.67684 1.05683 1.22710 1.25943 1.23272 0.97361 0.88918 0.97780 1.22380 0.97693 1.01912 0.95173 1.21882 0.95154 0.91759 0.86116 0.86111 1.23181 0.96665 0.98121 0.99955 1.21608 0.91033 0.91471 0.92362 1.44582 1.21509 1.04584 1.63787 1.19362 1.03899 0.84587 1.29054 0.91051 1.25648 0.97015 1.02649 1.00717 1.70065 1.12563 1.34683 1.42537 0.85112 0.77238 0.79257 0.77484 1.19795 1.21329 1.21053 1.21575 0.93306 0.89699 0.94854 0.88406 0.93643 0.93010 0.86682 0.88288 0.88503 0.87753 0.92935 0.88429 0.90592 0.83977 0.81108 0.80130 0.82017 0.89421 0.92932 0.98382 0.91848 0.94320 0.96866 0.96124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.18 71.98 0.73 -1.38 16 2 C 0.08 1.16 5.51 86.38 0.48 1.64 16 3 N -0.60 -16.19 2.54 -791.25 -2.01 -18.20 16 4 C 0.50 16.11 6.09 87.66 0.53 16.65 16 5 O -0.56 -26.32 12.92 15.67 0.20 -26.12 16 6 C 0.08 1.63 2.31 29.85 0.07 1.70 16 7 H 0.12 1.59 6.59 -2.39 -0.02 1.58 16 8 C -0.17 -2.37 9.05 71.98 0.65 -1.72 16 9 O -0.39 -10.27 9.54 -130.27 -1.24 -11.51 16 10 C 0.10 1.64 5.92 71.24 0.42 2.06 16 11 C -0.06 -1.24 5.55 -19.67 -0.11 -1.35 16 12 C -0.16 -3.62 9.82 22.36 0.22 -3.40 16 13 C 0.08 1.84 11.18 84.68 0.95 2.79 16 14 N -0.51 -12.41 10.36 -195.84 -2.03 -14.44 16 15 C 0.08 1.63 11.18 84.68 0.95 2.58 16 16 C -0.15 -2.74 9.82 22.36 0.22 -2.52 16 17 C 0.16 5.49 3.45 46.18 0.16 5.65 16 18 H 0.12 3.52 7.96 -2.39 -0.02 3.51 16 19 C -0.14 -5.88 6.43 31.99 0.21 -5.68 16 20 C 0.16 8.71 5.89 86.85 0.51 9.22 16 21 N -0.62 -35.65 3.40 -691.89 -2.35 -38.00 16 22 C -0.24 -14.95 10.27 84.03 0.86 -14.09 16 23 H 0.07 4.33 7.83 -2.91 -0.02 4.30 16 24 C -0.07 -4.19 5.49 84.86 0.47 -3.73 16 25 N -0.95 -60.66 10.09 21.65 0.22 -60.44 16 26 Si 0.98 49.34 29.55 68.60 2.03 51.37 16 27 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 28 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 29 H -0.28 -14.10 7.11 99.48 0.71 -13.40 16 30 C 0.13 6.18 6.47 86.73 0.56 6.74 16 31 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.69 7.42 -2.39 -0.02 0.67 16 34 H 0.12 0.96 4.11 -2.39 -0.01 0.95 16 35 H 0.10 1.09 8.09 -2.39 -0.02 1.07 16 36 H 0.10 0.99 5.53 -2.39 -0.01 0.98 16 37 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.10 0.95 8.10 -2.39 -0.02 0.93 16 40 H 0.08 1.06 8.04 -2.39 -0.02 1.04 16 41 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 42 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 43 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 44 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 45 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 46 H 0.05 2.52 6.09 -2.39 -0.01 2.50 16 47 H 0.00 -0.10 8.14 -2.39 -0.02 -0.11 16 48 H 0.06 3.98 5.88 -2.39 -0.01 3.97 16 49 H 0.25 15.24 8.31 -92.70 -0.77 14.47 16 50 H 0.01 0.69 5.98 -2.39 -0.01 0.68 16 51 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -91.43 403.49 3.61 -87.82 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.92 Total: 14.37 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 7.88 Total: 15.16 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -6.17 Total: -131.09 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -1.04 Total: -37.63 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.03 Total: 51.37 kcal Total: -91.43 3.61 -87.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481773804.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.558 kcal (2) G-P(sol) polarization free energy of solvation -91.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds