Wall clock time and date at job start Wed Apr 1 2020 04:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46974 * 2 1 4 4 C 1.36948 * 119.99531 * 93.54901 * 3 2 1 5 5 H 1.07999 * 119.99251 * 170.54655 * 4 3 2 6 6 C 1.38807 * 120.00292 * 350.54578 * 4 3 2 7 7 N 1.31622 * 119.99683 * 325.90705 * 6 4 3 8 8 Si 1.86795 * 120.00162 * 145.91009 * 6 4 3 9 9 H 1.48501 * 109.47238 * 94.99384 * 8 6 4 10 10 H 1.48501 * 109.47239 * 214.99297 * 8 6 4 11 11 H 1.48504 * 109.47141 * 334.99279 * 8 6 4 12 12 C 1.46499 * 120.00333 * 273.54527 * 3 2 1 13 13 C 1.52991 * 109.47287 * 263.40007 * 12 3 2 14 14 C 1.53042 * 109.46084 * 180.67687 * 13 12 3 15 15 C 1.53188 * 109.31436 * 178.62938 * 14 13 12 16 16 N 1.46926 * 108.77723 * 54.63259 * 15 14 13 17 17 C 1.34773 * 120.62830 * 126.36628 * 16 15 14 18 18 O 1.21521 * 120.00420 * 358.11680 * 17 16 15 19 19 C 1.48154 * 119.99824 * 178.11122 * 17 16 15 20 20 C 1.39166 * 119.69036 * 158.19569 * 19 17 16 21 21 C 1.38735 * 119.18629 * 180.27870 * 20 19 17 22 22 C 1.38381 * 118.55926 * 359.47621 * 21 20 19 23 23 C 1.39243 * 119.30237 * 0.52157 * 22 21 20 24 24 O 1.35669 * 119.61222 * 179.71999 * 23 22 21 25 25 C 1.42896 * 116.99512 * 180.02562 * 24 23 22 26 26 N 1.31928 * 120.76715 * 359.74436 * 23 22 21 27 27 C 1.46925 * 118.73618 * 306.64231 * 16 15 14 28 28 C 1.52766 * 109.00653 * 53.31378 * 27 16 15 29 29 H 1.08999 * 109.47370 * 66.92461 * 1 2 3 30 30 H 1.09003 * 109.47243 * 186.92527 * 1 2 3 31 31 H 1.09002 * 109.46971 * 306.92261 * 1 2 3 32 32 H 1.09002 * 109.47071 * 240.00187 * 2 1 3 33 33 H 1.09001 * 109.46988 * 120.00395 * 2 1 3 34 34 H 0.97003 * 119.99796 * 179.97438 * 7 6 4 35 35 H 1.09009 * 109.46724 * 143.39608 * 12 3 2 36 36 H 1.09000 * 109.46586 * 23.40777 * 12 3 2 37 37 H 1.08998 * 109.45979 * 300.64680 * 13 12 3 38 38 H 1.09003 * 109.49913 * 58.67616 * 14 13 12 39 39 H 1.09002 * 109.52161 * 298.59984 * 14 13 12 40 40 H 1.09011 * 109.58644 * 294.84204 * 15 14 13 41 41 H 1.09004 * 109.70210 * 174.49272 * 15 14 13 42 42 H 1.08006 * 120.40782 * 0.02562 * 20 19 17 43 43 H 1.08004 * 120.72257 * 179.72564 * 21 20 19 44 44 H 1.07995 * 120.34252 * 180.24229 * 22 21 20 45 45 H 1.09001 * 109.47496 * 60.00232 * 25 24 23 46 46 H 1.09005 * 109.46943 * 179.97438 * 25 24 23 47 47 H 1.08996 * 109.47486 * 299.99936 * 25 24 23 48 48 H 1.09003 * 109.58080 * 173.14006 * 27 16 15 49 49 H 1.08993 * 109.58908 * 293.56866 * 27 16 15 50 50 H 1.09000 * 109.56271 * 185.54745 * 28 27 16 51 51 H 1.08996 * 109.36635 * 65.49440 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3157 2.0022 1.1838 5 1 2.8170 2.9589 1.1806 6 6 1.9730 1.4022 2.3876 7 7 0.8733 0.6843 2.4755 8 14 3.0723 1.6137 3.8830 9 1 2.5720 2.7414 4.7097 10 1 3.0587 0.3658 4.6878 11 1 4.4602 1.9021 3.4402 12 6 2.1885 2.0980 -1.2662 13 6 3.6488 2.0046 -1.7129 14 6 3.8298 2.7678 -3.0271 15 6 5.2997 2.7009 -3.4534 16 7 5.7114 1.2917 -3.5123 17 6 6.2736 0.7867 -4.6282 18 8 6.4130 1.4893 -5.6099 19 6 6.7218 -0.6251 -4.6581 20 6 6.8697 -1.2756 -5.8795 21 6 7.2844 -2.5994 -5.8950 22 6 7.5477 -3.2244 -4.6887 23 6 7.3793 -2.5149 -3.5026 24 8 7.6301 -3.1232 -2.3161 25 6 7.4386 -2.3434 -1.1341 26 7 6.9783 -1.2581 -3.5190 27 6 5.4929 0.4422 -2.3337 28 6 4.0259 0.5357 -1.9180 29 1 -0.3634 0.4028 -0.9454 30 1 -0.3634 -1.0202 0.1239 31 1 -0.3633 0.6174 0.8216 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.6339 0.2647 3.3167 35 1 1.9162 3.1448 -1.1306 36 1 1.5468 1.6513 -2.0257 37 1 4.2911 2.4411 -0.9481 38 1 3.5388 3.8087 -2.8863 39 1 3.2062 2.3169 -3.7990 40 1 5.9154 3.2315 -2.7270 41 1 5.4184 3.1577 -4.4360 42 1 6.6604 -0.7575 -6.8037 43 1 7.4032 -3.1295 -6.8285 44 1 7.8759 -4.2531 -4.6675 45 1 6.4011 -2.0135 -1.0805 46 1 7.6728 -2.9482 -0.2580 47 1 8.0953 -1.4740 -1.1620 48 1 5.7368 -0.5917 -2.5784 49 1 6.1246 0.7847 -1.5142 50 1 3.8745 -0.0121 -0.9879 51 1 3.4005 0.1053 -2.7001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485033758.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:10 Heat of formation + Delta-G solvation = 8.258749 kcal Electronic energy + Delta-G solvation = -32079.416767 eV Core-core repulsion = 27980.928113 eV Total energy + Delta-G solvation = -4098.488654 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.29716 -39.78284 -38.18626 -37.51618 -35.83007 -33.61932 -32.66126 -31.35140 -30.87064 -30.54958 -29.29189 -27.69465 -26.68940 -24.95616 -23.66169 -23.36508 -22.97773 -22.35120 -20.79857 -20.01806 -19.38795 -18.17573 -17.72554 -16.56691 -16.43119 -16.31653 -16.02208 -15.95581 -15.22718 -14.99918 -14.47062 -14.18487 -14.15729 -13.78308 -13.77668 -13.66814 -13.47380 -13.16008 -13.01922 -12.64683 -12.52178 -12.15866 -12.00639 -11.84047 -11.79902 -11.39031 -11.27787 -10.99364 -10.95125 -10.76589 -10.64057 -10.52664 -10.37936 -10.31053 -10.15343 -10.09199 -9.88824 -9.64302 -9.23245 -9.15722 -8.86576 -8.53083 -8.28606 -6.86763 -5.79104 -3.01498 0.40460 0.92437 2.57363 2.78726 2.92436 3.38579 3.48949 3.50793 3.52066 3.82766 4.42032 4.53475 4.62753 4.68639 4.87439 5.07258 5.11458 5.12022 5.17392 5.19678 5.28101 5.34147 5.43337 5.51408 5.52582 5.59853 5.68259 5.77909 5.81329 5.89572 5.98312 6.09604 6.15781 6.18649 6.31542 6.41883 6.47102 6.54458 6.57635 6.72104 6.85962 6.87804 6.94983 6.98705 7.07121 7.17936 7.29459 7.44924 7.56208 7.77230 8.06649 8.16689 8.34307 9.25397 9.90470 10.37474 11.23825 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011579 B = 0.003315 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.597959 B = 8444.549861 C = 9497.697315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 N -0.594 5.594 4 C -0.254 4.254 5 H 0.072 0.928 6 C 0.006 3.994 7 N -0.882 5.882 8 Si 0.875 3.125 9 H -0.291 1.291 10 H -0.291 1.291 11 H -0.281 1.281 12 C 0.158 3.842 13 C -0.107 4.107 14 C -0.126 4.126 15 C 0.111 3.889 16 N -0.581 5.581 17 C 0.568 3.432 18 O -0.541 6.541 19 C 0.125 3.875 20 C -0.151 4.151 21 C -0.046 4.046 22 C -0.169 4.169 23 C 0.316 3.684 24 O -0.305 6.305 25 C 0.033 3.967 26 N -0.505 5.505 27 C 0.079 3.921 28 C -0.121 4.121 29 H 0.007 0.993 30 H 0.018 0.982 31 H 0.102 0.898 32 H 0.010 0.990 33 H 0.064 0.936 34 H 0.251 0.749 35 H 0.040 0.960 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.146 0.854 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.061 0.939 48 H 0.127 0.873 49 H 0.065 0.935 50 H 0.087 0.913 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.433 -7.024 -14.415 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.048 3.952 3 N -0.316 5.316 4 C -0.383 4.383 5 H 0.090 0.910 6 C -0.192 4.192 7 N -0.526 5.526 8 Si 0.704 3.296 9 H -0.219 1.219 10 H -0.217 1.217 11 H -0.207 1.207 12 C 0.031 3.969 13 C -0.128 4.128 14 C -0.165 4.165 15 C -0.011 4.011 16 N -0.312 5.312 17 C 0.354 3.646 18 O -0.419 6.419 19 C -0.011 4.011 20 C -0.172 4.172 21 C -0.071 4.071 22 C -0.190 4.190 23 C 0.136 3.864 24 O -0.212 6.212 25 C -0.062 4.062 26 N -0.232 5.232 27 C -0.042 4.042 28 C -0.159 4.159 29 H 0.026 0.974 30 H 0.038 0.962 31 H 0.121 0.879 32 H 0.028 0.972 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.167 0.833 43 H 0.167 0.833 44 H 0.164 0.836 45 H 0.085 0.915 46 H 0.118 0.882 47 H 0.080 0.920 48 H 0.144 0.856 49 H 0.083 0.917 50 H 0.106 0.894 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.395 -6.534 -13.906 19.741 hybrid contribution 0.464 -0.170 0.504 0.706 sum 12.858 -6.703 -13.402 19.745 Atomic orbital electron populations 1.22443 0.99249 0.99493 1.00581 1.20568 0.92640 0.84761 0.97260 1.44158 1.76233 1.10211 1.00976 1.19113 1.31457 1.04450 0.83254 0.91046 1.24584 0.96823 1.00945 0.96886 1.70239 1.19717 1.37576 1.25087 0.86685 0.82236 0.76963 0.83711 1.21889 1.21717 1.20724 1.20690 0.92069 0.95922 0.88243 1.21797 1.01348 0.94529 0.95135 1.21930 0.94851 1.01214 0.98530 1.21712 0.95982 0.80839 1.02609 1.48030 1.57882 1.11524 1.13757 1.17883 0.78415 0.85351 0.82975 1.90767 1.57407 1.59454 1.34286 1.20828 0.97437 0.94238 0.88571 1.21939 1.01228 0.95216 0.98850 1.21445 0.93851 0.93785 0.98062 1.21296 1.05474 1.02144 0.90115 1.19981 0.91410 0.88146 0.86857 1.86255 1.82439 1.39893 1.12563 1.23060 1.02843 0.96457 0.83843 1.67420 1.16568 1.09329 1.29930 1.22777 0.97250 0.97791 0.86426 1.21870 0.94171 0.98075 1.01780 0.97378 0.96242 0.87910 0.97178 0.91809 0.93907 0.94157 0.94570 0.91053 0.90884 0.92041 0.91352 0.89389 0.83317 0.83292 0.83580 0.91522 0.88151 0.92001 0.85650 0.91699 0.89416 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 9.63 37.16 0.36 -3.27 16 2 C 0.17 3.97 4.67 -4.04 -0.02 3.95 16 3 N -0.59 -13.83 2.13 -173.24 -0.37 -14.20 16 4 C -0.25 -6.60 9.59 -15.06 -0.14 -6.74 16 5 H 0.07 1.85 8.02 -52.49 -0.42 1.43 16 6 C 0.01 0.15 4.59 -17.43 -0.08 0.07 16 7 N -0.88 -24.15 8.99 55.49 0.50 -23.65 16 8 Si 0.87 20.83 29.67 -169.99 -5.04 15.79 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.16 3.08 5.17 -4.05 -0.02 3.06 16 13 C -0.11 -1.76 2.35 -90.58 -0.21 -1.98 16 14 C -0.13 -1.76 5.36 -26.61 -0.14 -1.90 16 15 C 0.11 1.50 6.44 -3.71 -0.02 1.48 16 16 N -0.58 -8.36 2.98 -174.02 -0.52 -8.88 16 17 C 0.57 8.43 7.61 -12.19 -0.09 8.34 16 18 O -0.54 -9.08 15.93 5.35 0.09 -9.00 16 19 C 0.13 1.61 6.41 -83.02 -0.53 1.08 16 20 C -0.15 -1.55 9.62 -39.05 -0.38 -1.93 16 21 C -0.05 -0.36 10.16 -39.35 -0.40 -0.76 16 22 C -0.17 -1.47 10.05 -39.16 -0.39 -1.86 16 23 C 0.32 3.54 7.49 -17.14 -0.13 3.41 16 24 O -0.31 -3.34 10.48 -18.71 -0.20 -3.53 16 25 C 0.03 0.32 10.35 101.05 1.05 1.36 16 26 N -0.50 -6.29 5.32 -9.88 -0.05 -6.34 16 27 C 0.08 1.12 5.90 -3.93 -0.02 1.10 16 28 C -0.12 -1.92 4.37 -26.83 -0.12 -2.04 16 29 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 32 H 0.01 0.21 6.66 -51.93 -0.35 -0.14 16 33 H 0.06 1.62 6.41 -51.93 -0.33 1.29 16 34 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.04 0.80 8.09 -51.92 -0.42 0.38 16 36 H 0.04 0.69 8.02 -51.93 -0.42 0.27 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 41 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 42 H 0.15 1.41 7.79 -52.48 -0.41 1.00 16 43 H 0.15 0.63 8.06 -52.48 -0.42 0.21 16 44 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 45 H 0.07 0.70 7.29 -51.93 -0.38 0.32 16 46 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 48 H 0.13 1.73 3.25 -71.88 -0.23 1.50 16 49 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.09 1.57 6.28 -51.93 -0.33 1.25 16 51 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 397.17 15.07 5.99 5.99 Total: -1.00 -29.84 397.17 -9.08 -38.92 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.16 Total: 1.54 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -1.30 Total: 3.37 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.44 Total: -53.07 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.11 Total: -12.53 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.04 Total: 15.79 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.84 -9.08 -38.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485033758.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.176 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds