Wall clock time and date at job start Wed Apr 1 2020 04:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46974 * 2 1 4 4 C 1.36948 * 119.99531 * 93.54901 * 3 2 1 5 5 H 1.07999 * 119.99251 * 170.54655 * 4 3 2 6 6 C 1.38807 * 120.00292 * 350.54578 * 4 3 2 7 7 N 1.31622 * 119.99683 * 325.90705 * 6 4 3 8 8 Si 1.86795 * 120.00162 * 145.91009 * 6 4 3 9 9 H 1.48501 * 109.47238 * 94.99384 * 8 6 4 10 10 H 1.48501 * 109.47239 * 214.99297 * 8 6 4 11 11 H 1.48504 * 109.47141 * 334.99279 * 8 6 4 12 12 C 1.46499 * 120.00333 * 273.54527 * 3 2 1 13 13 C 1.52991 * 109.47287 * 263.40007 * 12 3 2 14 14 C 1.53042 * 109.46084 * 180.67687 * 13 12 3 15 15 C 1.53188 * 109.31436 * 178.62938 * 14 13 12 16 16 N 1.46926 * 108.77723 * 54.63259 * 15 14 13 17 17 C 1.34773 * 120.62830 * 126.36628 * 16 15 14 18 18 O 1.21521 * 120.00420 * 358.11680 * 17 16 15 19 19 C 1.48154 * 119.99824 * 178.11122 * 17 16 15 20 20 C 1.39166 * 119.69036 * 158.19569 * 19 17 16 21 21 C 1.38735 * 119.18629 * 180.27870 * 20 19 17 22 22 C 1.38381 * 118.55926 * 359.47621 * 21 20 19 23 23 C 1.39243 * 119.30237 * 0.52157 * 22 21 20 24 24 O 1.35669 * 119.61222 * 179.71999 * 23 22 21 25 25 C 1.42896 * 116.99512 * 180.02562 * 24 23 22 26 26 N 1.31928 * 120.76715 * 359.74436 * 23 22 21 27 27 C 1.46925 * 118.73618 * 306.64231 * 16 15 14 28 28 C 1.52766 * 109.00653 * 53.31378 * 27 16 15 29 29 H 1.08999 * 109.47370 * 66.92461 * 1 2 3 30 30 H 1.09003 * 109.47243 * 186.92527 * 1 2 3 31 31 H 1.09002 * 109.46971 * 306.92261 * 1 2 3 32 32 H 1.09002 * 109.47071 * 240.00187 * 2 1 3 33 33 H 1.09001 * 109.46988 * 120.00395 * 2 1 3 34 34 H 0.97003 * 119.99796 * 179.97438 * 7 6 4 35 35 H 1.09009 * 109.46724 * 143.39608 * 12 3 2 36 36 H 1.09000 * 109.46586 * 23.40777 * 12 3 2 37 37 H 1.08998 * 109.45979 * 300.64680 * 13 12 3 38 38 H 1.09003 * 109.49913 * 58.67616 * 14 13 12 39 39 H 1.09002 * 109.52161 * 298.59984 * 14 13 12 40 40 H 1.09011 * 109.58644 * 294.84204 * 15 14 13 41 41 H 1.09004 * 109.70210 * 174.49272 * 15 14 13 42 42 H 1.08006 * 120.40782 * 0.02562 * 20 19 17 43 43 H 1.08004 * 120.72257 * 179.72564 * 21 20 19 44 44 H 1.07995 * 120.34252 * 180.24229 * 22 21 20 45 45 H 1.09001 * 109.47496 * 60.00232 * 25 24 23 46 46 H 1.09005 * 109.46943 * 179.97438 * 25 24 23 47 47 H 1.08996 * 109.47486 * 299.99936 * 25 24 23 48 48 H 1.09003 * 109.58080 * 173.14006 * 27 16 15 49 49 H 1.08993 * 109.58908 * 293.56866 * 27 16 15 50 50 H 1.09000 * 109.56271 * 185.54745 * 28 27 16 51 51 H 1.08996 * 109.36635 * 65.49440 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3157 2.0022 1.1838 5 1 2.8170 2.9589 1.1806 6 6 1.9730 1.4022 2.3876 7 7 0.8733 0.6843 2.4755 8 14 3.0723 1.6137 3.8830 9 1 2.5720 2.7414 4.7097 10 1 3.0587 0.3658 4.6878 11 1 4.4602 1.9021 3.4402 12 6 2.1885 2.0980 -1.2662 13 6 3.6488 2.0046 -1.7129 14 6 3.8298 2.7678 -3.0271 15 6 5.2997 2.7009 -3.4534 16 7 5.7114 1.2917 -3.5123 17 6 6.2736 0.7867 -4.6282 18 8 6.4130 1.4893 -5.6099 19 6 6.7218 -0.6251 -4.6581 20 6 6.8697 -1.2756 -5.8795 21 6 7.2844 -2.5994 -5.8950 22 6 7.5477 -3.2244 -4.6887 23 6 7.3793 -2.5149 -3.5026 24 8 7.6301 -3.1232 -2.3161 25 6 7.4386 -2.3434 -1.1341 26 7 6.9783 -1.2581 -3.5190 27 6 5.4929 0.4422 -2.3337 28 6 4.0259 0.5357 -1.9180 29 1 -0.3634 0.4028 -0.9454 30 1 -0.3634 -1.0202 0.1239 31 1 -0.3633 0.6174 0.8216 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.6339 0.2647 3.3167 35 1 1.9162 3.1448 -1.1306 36 1 1.5468 1.6513 -2.0257 37 1 4.2911 2.4411 -0.9481 38 1 3.5388 3.8087 -2.8863 39 1 3.2062 2.3169 -3.7990 40 1 5.9154 3.2315 -2.7270 41 1 5.4184 3.1577 -4.4360 42 1 6.6604 -0.7575 -6.8037 43 1 7.4032 -3.1295 -6.8285 44 1 7.8759 -4.2531 -4.6675 45 1 6.4011 -2.0135 -1.0805 46 1 7.6728 -2.9482 -0.2580 47 1 8.0953 -1.4740 -1.1620 48 1 5.7368 -0.5917 -2.5784 49 1 6.1246 0.7847 -1.5142 50 1 3.8745 -0.0121 -0.9879 51 1 3.4005 0.1053 -2.7001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485033758.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:09 Heat of formation + Delta-G solvation = -7.768467 kcal Electronic energy + Delta-G solvation = -32080.111759 eV Core-core repulsion = 27980.928113 eV Total energy + Delta-G solvation = -4099.183646 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.18389 -40.81833 -39.29618 -38.58794 -37.44318 -34.83736 -33.75292 -32.78193 -32.15995 -31.63918 -31.02439 -28.65914 -28.03058 -26.17121 -25.20760 -24.48351 -23.98168 -23.61474 -22.14642 -21.62600 -20.55875 -19.03864 -18.81431 -18.33734 -17.37123 -17.09931 -17.05000 -16.90265 -16.80893 -16.31577 -15.69988 -15.62491 -15.30739 -15.21736 -15.10917 -14.74466 -14.54897 -14.39226 -14.20704 -13.98321 -13.76895 -13.54790 -13.33801 -13.22697 -12.89639 -12.70689 -12.65471 -12.51076 -12.41178 -12.26109 -12.11375 -12.05960 -11.89019 -11.73411 -11.56429 -11.45632 -11.31075 -11.04596 -10.98642 -10.32936 -10.13374 -9.81069 -9.55277 -8.77141 -7.80101 -5.02944 -0.41469 0.19469 1.46592 1.53287 1.57400 1.60918 1.84651 2.06972 2.58499 2.66692 2.90271 3.24587 3.56096 3.65774 3.89647 3.93925 4.00885 4.03400 4.12985 4.18890 4.21867 4.37770 4.40266 4.41580 4.45534 4.57862 4.61702 4.67742 4.77574 4.79385 4.86799 4.90721 4.95957 5.01467 5.03654 5.07385 5.10627 5.16661 5.19597 5.21013 5.29866 5.34794 5.36906 5.60285 5.61724 5.66297 5.74534 6.11199 6.20570 6.27048 6.37477 6.52072 6.97008 7.26311 7.99035 8.41480 9.20789 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011579 B = 0.003315 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.597959 B = 8444.549861 C = 9497.697315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.180 3.820 3 N -0.604 5.604 4 C -0.258 4.258 5 H 0.068 0.932 6 C -0.038 4.038 7 N -0.904 5.904 8 Si 0.931 3.069 9 H -0.295 1.295 10 H -0.296 1.296 11 H -0.277 1.277 12 C 0.158 3.842 13 C -0.095 4.095 14 C -0.116 4.116 15 C 0.111 3.889 16 N -0.585 5.585 17 C 0.565 3.435 18 O -0.567 6.567 19 C 0.095 3.905 20 C -0.149 4.149 21 C -0.031 4.031 22 C -0.158 4.158 23 C 0.296 3.704 24 O -0.311 6.311 25 C 0.032 3.968 26 N -0.522 5.522 27 C 0.090 3.910 28 C -0.112 4.112 29 H 0.019 0.981 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.035 0.965 34 H 0.245 0.755 35 H 0.035 0.965 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.155 0.845 43 H 0.193 0.807 44 H 0.175 0.825 45 H 0.053 0.947 46 H 0.121 0.879 47 H 0.057 0.943 48 H 0.135 0.865 49 H 0.061 0.939 50 H 0.066 0.934 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.778 -8.263 -16.197 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.054 3.946 3 N -0.326 5.326 4 C -0.387 4.387 5 H 0.085 0.915 6 C -0.234 4.234 7 N -0.550 5.550 8 Si 0.761 3.239 9 H -0.223 1.223 10 H -0.222 1.222 11 H -0.203 1.203 12 C 0.032 3.968 13 C -0.117 4.117 14 C -0.154 4.154 15 C -0.011 4.011 16 N -0.315 5.315 17 C 0.352 3.648 18 O -0.447 6.447 19 C -0.040 4.040 20 C -0.170 4.170 21 C -0.056 4.056 22 C -0.179 4.179 23 C 0.115 3.885 24 O -0.217 6.217 25 C -0.063 4.063 26 N -0.250 5.250 27 C -0.032 4.032 28 C -0.150 4.150 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.173 0.827 43 H 0.210 0.790 44 H 0.193 0.807 45 H 0.072 0.928 46 H 0.139 0.861 47 H 0.076 0.924 48 H 0.151 0.849 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.752 -7.755 -15.705 22.268 hybrid contribution 0.059 0.185 0.985 1.004 sum 13.811 -7.570 -14.720 21.557 Atomic orbital electron populations 1.22270 0.99186 0.99569 0.99724 1.20453 0.92561 0.84672 0.96880 1.44295 1.76345 1.10471 1.01515 1.19302 1.30642 1.04361 0.84398 0.91456 1.25122 0.97659 1.01714 0.98936 1.70370 1.20619 1.38848 1.25194 0.85810 0.80826 0.76247 0.81027 1.22298 1.22207 1.20258 1.20821 0.93987 0.95170 0.86871 1.21588 0.98708 0.95329 0.96028 1.21825 0.95266 1.01580 0.96750 1.21728 0.95667 0.80804 1.02867 1.48099 1.57918 1.11739 1.13767 1.18245 0.77813 0.86240 0.82454 1.90736 1.58532 1.60404 1.35009 1.20663 0.99998 0.93596 0.89772 1.22163 1.00472 0.96355 0.98043 1.21910 0.91683 0.92565 0.99461 1.21727 1.03624 1.03201 0.89311 1.20365 0.92252 0.88111 0.87760 1.86252 1.82618 1.40069 1.12790 1.23112 1.01944 0.96825 0.84372 1.67171 1.17360 1.10262 1.30179 1.22669 0.95735 0.98474 0.86306 1.21732 0.95441 0.97210 1.00602 0.96203 0.95090 0.91196 0.94948 0.94621 0.94502 0.94711 0.93882 0.92633 0.89478 0.91998 0.90670 0.89222 0.82750 0.79007 0.80746 0.92791 0.86088 0.92438 0.84855 0.92079 0.91536 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.77 9.63 71.98 0.69 -6.08 16 2 C 0.18 8.26 4.67 86.38 0.40 8.66 16 3 N -0.60 -28.26 2.13 -702.00 -1.50 -29.76 16 4 C -0.26 -13.49 9.59 84.03 0.81 -12.69 16 5 H 0.07 3.52 8.02 -2.91 -0.02 3.49 16 6 C -0.04 -2.05 4.59 84.86 0.39 -1.66 16 7 N -0.90 -50.46 8.99 21.65 0.19 -50.26 16 8 Si 0.93 43.54 29.67 68.60 2.04 45.58 16 9 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 10 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 C 0.16 6.08 5.17 86.38 0.45 6.53 16 13 C -0.10 -3.11 2.35 -10.77 -0.03 -3.14 16 14 C -0.12 -3.09 5.36 30.67 0.16 -2.92 16 15 C 0.11 2.92 6.44 86.36 0.56 3.48 16 16 N -0.59 -16.57 2.98 -822.78 -2.45 -19.02 16 17 C 0.56 16.53 7.61 86.88 0.66 17.19 16 18 O -0.57 -18.80 15.93 -3.78 -0.06 -18.86 16 19 C 0.09 2.34 6.41 41.85 0.27 2.61 16 20 C -0.15 -2.74 9.62 22.61 0.22 -2.52 16 21 C -0.03 -0.37 10.16 22.42 0.23 -0.14 16 22 C -0.16 -2.22 10.05 22.55 0.23 -1.99 16 23 C 0.30 6.14 7.49 84.92 0.64 6.78 16 24 O -0.31 -6.40 10.48 -89.86 -0.94 -7.34 16 25 C 0.03 0.61 10.35 113.37 1.17 1.78 16 26 N -0.52 -12.60 5.32 -298.19 -1.59 -14.19 16 27 C 0.09 2.54 5.90 86.22 0.51 3.05 16 28 C -0.11 -3.53 4.37 30.53 0.13 -3.39 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 3.72 5.95 -2.39 -0.01 3.71 16 32 H 0.03 1.33 6.66 -2.39 -0.02 1.31 16 33 H 0.04 1.83 6.41 -2.39 -0.02 1.82 16 34 H 0.25 13.46 8.31 -92.71 -0.77 12.69 16 35 H 0.03 1.37 8.09 -2.38 -0.02 1.35 16 36 H 0.04 1.59 8.02 -2.39 -0.02 1.58 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.09 2.37 7.00 -2.38 -0.02 2.35 16 42 H 0.15 2.62 7.79 -2.91 -0.02 2.60 16 43 H 0.19 0.58 8.06 -2.91 -0.02 0.56 16 44 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 45 H 0.05 1.14 7.29 -2.39 -0.02 1.12 16 46 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 47 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 48 H 0.13 3.67 3.25 -41.78 -0.14 3.54 16 49 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.07 2.40 6.28 -2.39 -0.01 2.39 16 51 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -65.01 397.17 3.97 -61.04 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.79 Total: 17.26 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 7.49 Total: 15.56 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -5.34 Total: -113.23 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -1.00 Total: -26.20 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.04 Total: 45.58 kcal Total: -65.01 3.97 -61.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485033758.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.269 kcal (2) G-P(sol) polarization free energy of solvation -65.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds