Wall clock time and date at job start Wed Apr 1 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46905 * 109.47103 * 2 1 4 4 C 1.46898 * 111.00009 * 74.60135 * 3 2 1 5 5 C 1.52994 * 109.47366 * 199.23524 * 4 3 2 6 6 N 1.46503 * 109.47209 * 174.76179 * 5 4 3 7 7 C 1.34782 * 119.99790 * 179.97438 * 6 5 4 8 8 O 1.21551 * 120.00323 * 0.02562 * 7 6 5 9 9 C 1.47846 * 119.99555 * 180.02562 * 7 6 5 10 10 C 1.39589 * 120.14684 * 353.57662 * 9 7 6 11 11 C 1.37940 * 119.85285 * 180.23253 * 10 9 7 12 12 C 1.38381 * 120.14582 * 0.06193 * 11 10 9 13 13 C 1.50694 * 119.85541 * 179.97438 * 12 11 10 14 14 C 1.38340 * 120.29247 * 359.96115 * 12 11 10 15 15 C 1.37986 * 120.14399 * 359.97438 * 14 12 11 16 16 C 1.50693 * 120.07111 * 180.02562 * 15 14 12 17 17 C 1.46895 * 111.00367 * 198.55587 * 3 2 1 18 18 C 1.50701 * 109.47080 * 66.04639 * 17 3 2 19 19 O 1.21295 * 120.00055 * 359.97438 * 18 17 3 20 20 N 1.34778 * 120.00270 * 180.02562 * 18 17 3 21 21 C 1.37095 * 120.00095 * 180.02562 * 20 18 17 22 22 H 1.07993 * 120.00345 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99693 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00189 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99738 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47153 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47032 * 119.99883 * 25 23 21 28 28 H 1.48498 * 109.46706 * 239.99735 * 25 23 21 29 29 H 1.09001 * 109.47178 * 300.69074 * 1 2 3 30 30 H 1.08997 * 109.47825 * 60.70005 * 1 2 3 31 31 H 1.09007 * 109.47037 * 180.69622 * 1 2 3 32 32 H 1.09005 * 109.47441 * 240.00610 * 2 1 3 33 33 H 1.08997 * 109.47953 * 120.00071 * 2 1 3 34 34 H 1.08999 * 109.47340 * 79.22680 * 4 3 2 35 35 H 1.09011 * 109.47063 * 319.23294 * 4 3 2 36 36 H 1.08994 * 109.47824 * 54.75919 * 5 4 3 37 37 H 1.09009 * 109.47079 * 294.76083 * 5 4 3 38 38 H 0.96990 * 120.00193 * 0.02562 * 6 5 4 39 39 H 1.08003 * 120.07610 * 0.25516 * 10 9 7 40 40 H 1.07994 * 119.92613 * 180.02562 * 11 10 9 41 41 H 1.09003 * 109.47333 * 269.98142 * 13 12 11 42 42 H 1.08997 * 109.47061 * 29.97918 * 13 12 11 43 43 H 1.08998 * 109.47426 * 149.98385 * 13 12 11 44 44 H 1.07996 * 119.93054 * 180.02562 * 14 12 11 45 45 H 1.09000 * 109.47309 * 263.31480 * 16 15 14 46 46 H 1.08995 * 109.47649 * 23.31412 * 16 15 14 47 47 H 1.09004 * 109.47194 * 143.32196 * 16 15 14 48 48 H 1.08997 * 109.47364 * 186.04642 * 17 3 2 49 49 H 1.09002 * 109.47231 * 306.04513 * 17 3 2 50 50 H 0.96996 * 119.99697 * 359.97438 * 20 18 17 51 51 H 0.97004 * 120.00211 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8518 2.0028 1.3222 5 6 1.9076 3.5255 1.1845 6 7 1.6160 4.1440 2.4802 7 6 1.6097 5.4864 2.5999 8 8 1.8454 6.1840 1.6328 9 6 1.3161 6.1105 3.9076 10 6 0.9143 5.3213 4.9866 11 6 0.6373 5.9105 6.2027 12 6 0.7556 7.2809 6.3540 13 6 0.4508 7.9178 7.6853 14 6 1.1529 8.0689 5.2885 15 6 1.4343 7.4919 4.0671 16 6 1.8674 8.3517 2.9078 17 6 3.4208 1.4481 -0.4364 18 6 3.5157 1.0343 -1.8824 19 8 2.5146 0.7176 -2.4895 20 7 4.7131 1.0152 -2.5007 21 6 4.7993 0.6393 -3.8163 22 1 3.9079 0.3581 -4.3571 23 6 6.0339 0.6191 -4.4536 24 7 7.1187 0.9608 -3.7954 25 14 6.1515 0.1062 -6.2460 26 1 4.7973 -0.2287 -6.7549 27 1 6.7186 1.2227 -7.0442 28 1 7.0323 -1.0836 -6.3636 29 1 -0.3633 0.5245 0.8837 30 1 -0.3634 0.5029 -0.8961 31 1 -0.3633 -1.0277 0.0125 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.6509 1.6681 1.9837 35 1 0.8882 1.7108 1.7400 36 1 1.1692 3.8515 0.4520 37 1 2.9027 3.8243 0.8549 38 1 1.4283 3.5874 3.2520 39 1 0.8209 4.2517 4.8697 40 1 0.3267 5.3010 7.0384 41 1 -0.6046 8.1874 7.7259 42 1 0.6767 7.2130 8.4854 43 1 1.0595 8.8136 7.8074 44 1 1.2437 9.1377 5.4132 45 1 1.0051 8.5767 2.2802 46 1 2.2950 9.2809 3.2843 47 1 2.6154 7.8194 2.3201 48 1 3.7905 2.4674 -0.3252 49 1 4.0223 0.7748 0.1744 50 1 5.5138 1.2682 -2.0151 51 1 7.9806 0.9471 -4.2404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493053398.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:12 Heat of formation + Delta-G solvation = -46.641157 kcal Electronic energy + Delta-G solvation = -29632.869454 eV Core-core repulsion = 25532.000162 eV Total energy + Delta-G solvation = -4100.869292 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.63544 -39.00921 -38.55854 -36.89168 -34.98434 -33.81630 -33.65732 -32.49532 -31.33347 -30.79151 -29.37375 -27.76679 -27.29936 -26.05218 -24.22417 -23.13202 -22.75986 -21.37717 -21.04624 -20.28022 -19.15213 -18.00013 -17.83327 -16.57359 -16.19466 -15.70271 -15.42241 -15.35411 -15.32802 -15.00107 -14.64454 -14.39438 -14.32216 -13.98988 -13.78834 -13.73561 -13.57230 -13.46542 -13.19045 -13.07479 -12.77928 -12.38998 -12.17659 -12.14101 -12.01090 -11.92416 -11.71840 -11.55517 -11.46085 -11.43906 -11.35934 -11.11670 -10.79201 -10.51062 -10.32033 -10.20114 -9.75873 -9.45388 -9.24442 -9.16871 -8.87161 -8.41834 -7.97407 -7.89626 -6.39342 -3.79952 0.53898 1.00523 2.66084 2.92479 3.18228 3.28751 3.35999 3.52468 3.92127 4.03799 4.25899 4.34707 4.35034 4.50025 4.58405 4.80974 4.88699 4.94072 5.00678 5.13139 5.14239 5.20753 5.24816 5.27193 5.35635 5.43860 5.44730 5.57847 5.58094 5.63810 5.66728 5.78464 5.83189 5.87719 5.88845 5.91429 5.98678 6.01004 6.10980 6.14547 6.26372 6.30723 6.38099 6.47023 6.55454 6.56564 7.26412 7.30295 7.38963 7.57822 8.08820 8.09329 8.64136 9.20669 9.57062 10.08630 10.78501 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.001864 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.817020 B =15019.994000 C =16212.454851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.052 3.948 3 N -0.511 5.511 4 C 0.043 3.957 5 C 0.122 3.878 6 N -0.725 5.725 7 C 0.556 3.444 8 O -0.526 6.526 9 C -0.144 4.144 10 C -0.078 4.078 11 C -0.138 4.138 12 C -0.059 4.059 13 C -0.119 4.119 14 C -0.134 4.134 15 C -0.016 4.016 16 C -0.123 4.123 17 C 0.042 3.958 18 C 0.444 3.556 19 O -0.576 6.576 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.022 0.978 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.396 0.604 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.128 0.872 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.097 0.903 48 H 0.089 0.911 49 H 0.048 0.952 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.295 9.915 24.989 29.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 N -0.236 5.236 4 C -0.085 4.085 5 C -0.002 4.002 6 N -0.378 5.378 7 C 0.343 3.657 8 O -0.404 6.404 9 C -0.147 4.147 10 C -0.096 4.096 11 C -0.156 4.156 12 C -0.059 4.059 13 C -0.175 4.175 14 C -0.152 4.152 15 C -0.017 4.017 16 C -0.179 4.179 17 C -0.089 4.089 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.040 0.960 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.231 0.769 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.146 0.854 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.115 0.885 48 H 0.107 0.893 49 H 0.066 0.934 50 H 0.225 0.775 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.879 10.442 23.432 28.270 hybrid contribution 1.106 -0.875 0.479 1.489 sum -10.773 9.566 23.910 27.916 Atomic orbital electron populations 1.21700 0.95283 1.00744 1.01951 1.22179 0.95956 0.87929 1.01450 1.61432 1.19053 1.19220 1.23891 1.22258 1.01499 0.93590 0.91199 1.21375 1.02561 0.92023 0.84232 1.45864 1.72349 1.06495 1.13063 1.18226 0.77249 0.81995 0.88183 1.90765 1.48461 1.61527 1.39618 1.19799 1.06889 0.94083 0.93975 1.21265 0.96641 0.99385 0.92354 1.20939 1.02670 0.94387 0.97574 1.20130 0.96179 0.93766 0.95808 1.20863 1.02271 1.00960 0.93425 1.20955 1.02145 0.99970 0.92097 1.20076 0.93641 0.92560 0.95473 1.21104 1.03173 0.97965 0.95663 1.21946 0.88780 1.01949 0.96231 1.19701 0.84431 0.84932 0.88021 1.90507 1.35517 1.53165 1.66769 1.41877 1.07219 1.59205 1.11843 1.19744 0.94898 1.41510 0.86544 0.87841 1.25260 0.94851 0.97546 1.00340 1.69620 0.98763 1.48480 1.37462 0.85805 0.78501 0.78045 0.82023 1.19222 1.20759 1.20831 0.93772 0.91468 0.92889 0.88321 0.95988 0.94340 0.90197 0.90000 0.91096 0.76907 0.85631 0.85512 0.90763 0.91238 0.91242 0.85418 0.90504 0.92445 0.88476 0.89268 0.93399 0.77527 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 10.02 37.16 0.37 -1.51 16 2 C 0.05 0.82 5.21 -3.82 -0.02 0.80 16 3 N -0.51 -8.22 4.11 -236.07 -0.97 -9.19 16 4 C 0.04 0.52 4.93 -3.83 -0.02 0.50 16 5 C 0.12 1.55 5.70 -4.04 -0.02 1.53 16 6 N -0.73 -7.64 5.51 -61.25 -0.34 -7.98 16 7 C 0.56 7.02 7.70 -12.33 -0.09 6.92 16 8 O -0.53 -8.44 13.35 5.32 0.07 -8.36 16 9 C -0.14 -1.52 5.87 -104.97 -0.62 -2.14 16 10 C -0.08 -0.61 9.53 -39.19 -0.37 -0.99 16 11 C -0.14 -0.96 9.68 -39.64 -0.38 -1.35 16 12 C -0.06 -0.42 5.89 -104.53 -0.62 -1.03 16 13 C -0.12 -0.53 10.00 36.00 0.36 -0.17 16 14 C -0.13 -1.10 9.31 -39.64 -0.37 -1.47 16 15 C -0.02 -0.17 5.91 -104.23 -0.62 -0.79 16 16 C -0.12 -1.29 8.72 36.00 0.31 -0.98 16 17 C 0.04 0.75 5.28 -4.98 -0.03 0.72 16 18 C 0.44 10.45 7.31 -10.98 -0.08 10.37 16 19 O -0.58 -15.36 14.10 5.54 0.08 -15.28 16 20 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 21 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.76 13.05 55.50 0.72 -24.03 16 25 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 H 0.04 0.51 6.67 -51.93 -0.35 0.16 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 1.91 5.83 -51.93 -0.30 1.61 16 33 H 0.02 0.30 8.02 -51.93 -0.42 -0.12 16 34 H 0.04 0.41 8.01 -51.93 -0.42 0.00 16 35 H 0.08 0.82 6.41 -51.92 -0.33 0.49 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.01 6.94 -51.92 -0.36 0.65 16 38 H 0.40 2.93 6.55 -40.82 -0.27 2.67 16 39 H 0.13 0.68 6.46 -52.48 -0.34 0.34 16 40 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 43 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 44 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.48 8.04 -51.93 -0.42 0.06 16 47 H 0.10 1.24 5.88 -51.93 -0.31 0.93 16 48 H 0.09 1.48 6.69 -51.93 -0.35 1.14 16 49 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 50 H 0.39 9.59 7.90 -40.82 -0.32 9.26 16 51 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 412.47 15.07 6.22 6.22 Total: -1.00 -33.39 412.47 -9.64 -43.03 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -7.90 Total: 11.40 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -2.43 Total: 2.42 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.64 Total: -55.64 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: 0.15 Total: -23.64 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.39 -9.64 -43.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493053398.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.612 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds