Wall clock time and date at job start Wed Apr 1 2020 05:54:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46497 * 109.47188 * 2 1
4 4 C 1.46500 * 120.00784 * 270.00147 * 3 2 1
5 5 C 1.50700 * 109.46725 * 89.99497 * 4 3 2
6 6 O 1.21280 * 120.00237 * 0.02562 * 5 4 3
7 7 N 1.34783 * 119.99755 * 180.02562 * 5 4 3
8 8 C 1.47153 * 120.98222 * 0.02562 * 7 5 4
9 9 C 1.53291 * 108.38594 * 129.44762 * 8 7 5
10 10 O 1.42959 * 109.22742 * 52.29985 * 9 8 7
11 11 C 1.42963 * 114.16160 * 297.42329 * 10 9 8
12 12 H 1.08998 * 109.51768 * 302.65035 * 11 10 9
13 13 C 1.53008 * 109.50746 * 182.55297 * 11 10 9
14 14 N 1.46494 * 109.47310 * 65.00066 * 13 11 10
15 15 C 1.36930 * 120.00403 * 180.02562 * 14 13 11
16 16 H 1.08000 * 119.99884 * 0.02562 * 15 14 13
17 17 C 1.38806 * 120.00435 * 179.97438 * 15 14 13
18 18 N 1.31620 * 120.00164 * 359.97438 * 17 15 14
19 19 Si 1.86808 * 120.00460 * 179.97438 * 17 15 14
20 20 H 1.48502 * 109.46514 * 359.97438 * 19 17 15
21 21 H 1.48496 * 109.47300 * 119.99449 * 19 17 15
22 22 H 1.48493 * 109.47134 * 239.99991 * 19 17 15
23 23 C 1.47145 * 120.98475 * 179.72260 * 7 5 4
24 24 C 1.39678 * 119.99800 * 90.00090 * 3 2 1
25 25 C 1.38911 * 120.07522 * 179.72542 * 24 3 2
26 26 C 1.38107 * 119.92465 * 179.76998 * 25 24 3
27 27 C 1.38282 * 120.07264 * 0.50605 * 26 25 24
28 28 C 1.38287 * 120.15396 * 359.74703 * 27 26 25
29 29 C 1.38109 * 120.07079 * 359.97438 * 28 27 26
30 30 H 1.09002 * 109.47153 * 299.99573 * 1 2 3
31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
32 32 H 1.09004 * 109.47261 * 59.99745 * 1 2 3
33 33 H 1.08996 * 109.47853 * 120.00399 * 2 1 3
34 34 H 1.09002 * 109.47153 * 240.00427 * 2 1 3
35 35 H 1.08987 * 109.47905 * 210.00002 * 4 3 2
36 36 H 1.09002 * 109.46739 * 330.00111 * 4 3 2
37 37 H 1.09009 * 109.68106 * 249.16928 * 8 7 5
38 38 H 1.08998 * 109.68233 * 9.68187 * 8 7 5
39 39 H 1.09000 * 109.51137 * 172.22562 * 9 8 7
40 40 H 1.09006 * 109.50603 * 292.32451 * 9 8 7
41 41 H 1.09002 * 109.46881 * 185.00028 * 13 11 10
42 42 H 1.09004 * 109.47170 * 305.00017 * 13 11 10
43 43 H 0.97000 * 119.99907 * 359.97438 * 14 13 11
44 44 H 0.96996 * 120.00425 * 180.02562 * 18 17 15
45 45 H 1.09006 * 109.67950 * 350.28073 * 23 7 5
46 46 H 1.09000 * 109.68822 * 110.82660 * 23 7 5
47 47 H 1.07999 * 120.03716 * 0.02562 * 25 24 3
48 48 H 1.07998 * 119.96389 * 180.25571 * 26 25 24
49 49 H 1.08005 * 119.92548 * 179.77061 * 27 26 25
50 50 H 1.07995 * 119.96400 * 180.02562 * 28 27 26
51 51 H 1.08001 * 120.03469 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2625 2.0720 -1.2686
5 6 1.0066 2.7823 -1.7036
6 8 0.0063 2.7183 -1.0209
7 7 0.9951 3.4888 -2.8513
8 6 2.1963 3.5805 -3.6965
9 6 1.8038 3.2240 -5.1348
10 8 0.6869 4.0239 -5.5301
11 6 -0.4938 3.8044 -4.7544
12 1 -0.7728 2.7520 -4.8057
13 6 -1.6341 4.6629 -5.3055
14 7 -1.9717 4.2159 -6.6591
15 6 -2.9699 4.8410 -7.3576
16 1 -3.5081 5.6638 -6.9108
17 6 -3.2893 4.4178 -8.6405
18 7 -2.6324 3.4160 -9.1857
19 14 -4.6516 5.2701 -9.5931
20 1 -5.2304 6.3572 -8.7634
21 1 -4.0959 5.8444 -10.8447
22 1 -5.7118 4.2858 -9.9282
23 6 -0.2208 4.1857 -3.2997
24 6 2.2511 2.0396 1.2097
25 6 2.7196 3.3473 1.2116
26 6 2.9442 3.9970 2.4094
27 6 2.7132 3.3435 3.6060
28 6 2.2518 2.0399 3.6078
29 6 2.0197 1.3863 2.4135
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5139 -0.8900
33 1 1.8934 -0.5139 0.8899
34 1 1.8933 -0.5138 -0.8900
35 1 3.0643 2.7985 -1.1383
36 1 2.5506 1.3453 -2.0283
37 1 2.5909 4.5962 -3.6646
38 1 2.9519 2.8818 -3.3375
39 1 2.6447 3.4186 -5.8004
40 1 1.5341 2.1691 -5.1876
41 1 -2.5079 4.5632 -4.6615
42 1 -1.3216 5.7068 -5.3349
43 1 -1.4875 3.4777 -7.0609
44 1 -2.8554 3.1206 -10.0823
45 1 -1.0653 3.8871 -2.6785
46 1 -0.0742 5.2634 -3.2272
47 1 2.9040 3.8568 0.2773
48 1 3.3045 5.0151 2.4116
49 1 2.8932 3.8526 4.5414
50 1 2.0721 1.5327 4.5441
51 1 1.6589 0.3683 2.4156
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001502095033.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:54:44
Heat of formation + Delta-G solvation = -14.359227 kcal
Electronic energy + Delta-G solvation = -30978.646950 eV
Core-core repulsion = 26879.177507 eV
Total energy + Delta-G solvation = -4099.469443 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-40.69770 -39.64439 -38.32207 -36.46987 -35.08874 -34.41039 -32.42451 -32.02267
-30.87709 -30.43085 -29.93180 -28.20329 -26.98846 -25.23657 -23.60370 -23.54001
-22.67690 -22.16659 -21.06095 -20.69592 -19.29261 -18.09513 -17.54330 -17.08025
-16.72535 -16.24720 -15.92324 -15.58819 -15.45861 -15.11282 -14.78505 -14.50756
-14.48943 -14.20841 -14.01264 -13.85847 -13.57433 -13.28048 -13.17966 -13.11414
-12.76146 -12.67868 -12.49318 -12.38218 -12.16316 -11.95566 -11.64112 -11.53428
-11.27198 -11.04489 -10.91002 -10.89444 -10.81574 -10.49491 -10.40804 -10.03970
-9.92493 -9.76465 -9.64665 -9.08505 -8.87967 -8.56986 -7.54105 -6.90020
-5.73722 -3.02410 1.27549 1.43723 2.44158 2.50872 2.95514 3.45259
3.50655 3.53078 3.74017 3.89567 4.26010 4.48686 4.53633 4.57363
4.68840 4.71840 4.80545 4.86185 4.88652 5.00822 5.01606 5.10925
5.14396 5.21331 5.26981 5.28610 5.32288 5.41550 5.49734 5.59306
5.61157 5.62351 5.65469 5.76602 5.85280 5.86333 5.93283 6.06334
6.21973 6.25572 6.28827 6.33627 6.47053 6.54606 6.65866 6.68069
6.92374 7.19919 7.26345 7.42597 7.72051 8.02227 8.44351 9.56174
10.12913 10.48750 11.49179
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.020874 B = 0.002055 C = 0.002039
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1341.035646 B =13623.530649 C =13725.787131
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.122 3.878
3 N -0.608 5.608
4 C 0.107 3.893
5 C 0.489 3.511
6 O -0.518 6.518
7 N -0.615 5.615
8 C 0.071 3.929
9 C 0.046 3.954
10 O -0.357 6.357
11 C 0.075 3.925
12 H 0.062 0.938
13 C 0.163 3.837
14 N -0.726 5.726
15 C -0.238 4.238
16 H 0.071 0.929
17 C -0.015 4.015
18 N -0.932 5.932
19 Si 0.908 3.092
20 H -0.280 1.280
21 H -0.292 1.292
22 H -0.292 1.292
23 C 0.087 3.913
24 C 0.227 3.773
25 C -0.195 4.195
26 C -0.072 4.072
27 C -0.182 4.182
28 C -0.074 4.074
29 C -0.193 4.193
30 H 0.058 0.942
31 H 0.056 0.944
32 H 0.067 0.933
33 H 0.077 0.923
34 H 0.072 0.928
35 H 0.104 0.896
36 H 0.104 0.896
37 H 0.080 0.920
38 H 0.088 0.912
39 H 0.105 0.895
40 H 0.053 0.947
41 H 0.036 0.964
42 H 0.030 0.970
43 H 0.387 0.613
44 H 0.254 0.746
45 H 0.100 0.900
46 H 0.076 0.924
47 H 0.115 0.885
48 H 0.118 0.882
49 H 0.115 0.885
50 H 0.118 0.882
51 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.372 -5.626 23.079 29.429
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C -0.001 4.001
3 N -0.318 5.318
4 C -0.021 4.021
5 C 0.275 3.725
6 O -0.393 6.393
7 N -0.351 5.351
8 C -0.052 4.052
9 C -0.033 4.033
10 O -0.275 6.275
11 C 0.016 3.984
12 H 0.080 0.920
13 C 0.035 3.965
14 N -0.371 5.371
15 C -0.369 4.369
16 H 0.089 0.911
17 C -0.211 4.211
18 N -0.581 5.581
19 Si 0.739 3.261
20 H -0.205 1.205
21 H -0.219 1.219
22 H -0.219 1.219
23 C -0.036 4.036
24 C 0.126 3.874
25 C -0.218 4.218
26 C -0.091 4.091
27 C -0.202 4.202
28 C -0.093 4.093
29 C -0.216 4.216
30 H 0.078 0.922
31 H 0.075 0.925
32 H 0.086 0.914
33 H 0.095 0.905
34 H 0.090 0.910
35 H 0.122 0.878
36 H 0.122 0.878
37 H 0.098 0.902
38 H 0.106 0.894
39 H 0.123 0.877
40 H 0.071 0.929
41 H 0.053 0.947
42 H 0.047 0.953
43 H 0.221 0.779
44 H 0.064 0.936
45 H 0.118 0.882
46 H 0.094 0.906
47 H 0.133 0.867
48 H 0.136 0.864
49 H 0.134 0.866
50 H 0.136 0.864
51 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 16.670 -5.530 23.123 29.037
hybrid contribution -0.592 0.105 -0.706 0.927
sum 16.078 -5.425 22.417 28.115
Atomic orbital electron populations
1.22233 0.95551 1.01115 1.03957 1.21462 0.94877 0.81360 1.02357
1.46162 1.71151 1.12805 1.01659 1.21326 0.95443 0.98012 0.87328
1.21457 0.91301 0.79236 0.80496 1.90714 1.34967 1.60729 1.52872
1.48247 1.12975 1.51513 1.22339 1.22527 0.87288 1.03123 0.92303
1.22903 0.91053 0.95575 0.93728 1.88171 1.19397 1.63009 1.56921
1.22702 0.86614 1.00381 0.88726 0.92006 1.20616 0.91621 0.95625
0.88620 1.42231 1.42302 1.40738 1.11814 1.19271 1.09512 1.11819
0.96318 0.91071 1.24749 1.00051 0.98826 0.97436 1.69682 1.43482
1.29166 1.15754 0.86100 0.81465 0.78596 0.79937 1.20532 1.21868
1.21906 1.22213 0.88025 0.97210 0.96192 1.17755 0.92757 0.91377
0.85542 1.20626 1.08463 0.94140 0.98530 1.20865 0.97249 0.99002
0.91993 1.20885 1.05827 0.95711 0.97750 1.20879 0.96711 0.94598
0.97122 1.20664 1.08971 1.00877 0.91040 0.92244 0.92521 0.91389
0.90526 0.90976 0.87814 0.87830 0.90193 0.89393 0.87743 0.92863
0.94682 0.95262 0.77939 0.93613 0.88159 0.90566 0.86690 0.86360
0.86643 0.86356 0.86084
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.73 9.50 37.16 0.35 -1.38 16
2 C 0.12 1.00 5.92 -4.04 -0.02 0.98 16
3 N -0.61 -5.82 2.16 -173.13 -0.37 -6.19 16
4 C 0.11 0.90 4.06 -5.19 -0.02 0.88 16
5 C 0.49 5.91 7.69 -10.98 -0.08 5.82 16
6 O -0.52 -8.20 13.49 5.56 0.07 -8.13 16
7 N -0.61 -7.24 3.03 -172.56 -0.52 -7.76 16
8 C 0.07 0.63 6.54 -3.54 -0.02 0.60 16
9 C 0.05 0.52 6.98 37.31 0.26 0.78 16
10 O -0.36 -6.03 10.33 -35.23 -0.36 -6.39 16
11 C 0.07 1.26 2.79 -26.81 -0.07 1.18 16
12 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16
13 C 0.16 3.37 5.93 -4.04 -0.02 3.34 16
14 N -0.73 -18.98 5.55 -59.91 -0.33 -19.32 16
15 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16
16 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16
17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16
18 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16
19 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16
20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
23 C 0.09 1.23 5.90 -3.77 -0.02 1.21 16
24 C 0.23 2.40 6.55 -83.78 -0.55 1.85 16
25 C -0.20 -2.02 9.21 -39.38 -0.36 -2.39 16
26 C -0.07 -0.69 10.04 -39.61 -0.40 -1.09 16
27 C -0.18 -1.65 10.04 -39.55 -0.40 -2.05 16
28 C -0.07 -0.67 10.04 -39.61 -0.40 -1.07 16
29 C -0.19 -1.90 9.21 -39.38 -0.36 -2.27 16
30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
32 H 0.07 0.88 6.39 -51.93 -0.33 0.54 16
33 H 0.08 0.53 6.20 -51.93 -0.32 0.21 16
34 H 0.07 0.48 7.89 -51.93 -0.41 0.07 16
35 H 0.10 0.70 6.06 -51.94 -0.31 0.39 16
36 H 0.10 0.64 7.41 -51.93 -0.38 0.25 16
37 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16
38 H 0.09 0.48 6.05 -51.93 -0.31 0.16 16
39 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16
40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16
42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
43 H 0.39 10.72 7.67 -40.82 -0.31 10.40 16
44 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16
45 H 0.10 1.53 7.08 -51.93 -0.37 1.16 16
46 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16
47 H 0.12 1.09 6.14 -52.49 -0.32 0.76 16
48 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16
49 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16
50 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16
51 H 0.12 1.03 6.14 -52.49 -0.32 0.71 16
LS Contribution 405.02 15.07 6.10 6.10
Total: -1.00 -35.37 405.02 -10.11 -45.47
By element:
Atomic # 1 Polarization: 15.55 SS G_CDS: -8.02 Total: 7.53 kcal
Atomic # 6 Polarization: 1.30 SS G_CDS: -2.37 Total: -1.07 kcal
Atomic # 7 Polarization: -60.72 SS G_CDS: -0.50 Total: -61.22 kcal
Atomic # 8 Polarization: -14.23 SS G_CDS: -0.29 Total: -14.52 kcal
Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -35.37 -10.11 -45.47 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001502095033.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.114 kcal
(2) G-P(sol) polarization free energy of solvation -35.365 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.251 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.473 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.359 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds