Wall clock time and date at job start Wed Apr 1 2020 05:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46500 * 120.00784 * 270.00147 * 3 2 1 5 5 C 1.50700 * 109.46725 * 89.99497 * 4 3 2 6 6 O 1.21280 * 120.00237 * 0.02562 * 5 4 3 7 7 N 1.34783 * 119.99755 * 180.02562 * 5 4 3 8 8 C 1.47153 * 120.98222 * 0.02562 * 7 5 4 9 9 C 1.53291 * 108.38594 * 129.44762 * 8 7 5 10 10 O 1.42959 * 109.22742 * 52.29985 * 9 8 7 11 11 C 1.42963 * 114.16160 * 297.42329 * 10 9 8 12 12 H 1.08998 * 109.51768 * 302.65035 * 11 10 9 13 13 C 1.53008 * 109.50746 * 182.55297 * 11 10 9 14 14 N 1.46494 * 109.47310 * 65.00066 * 13 11 10 15 15 C 1.36930 * 120.00403 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99884 * 0.02562 * 15 14 13 17 17 C 1.38806 * 120.00435 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00164 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 120.00460 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46514 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47300 * 119.99449 * 19 17 15 22 22 H 1.48493 * 109.47134 * 239.99991 * 19 17 15 23 23 C 1.47145 * 120.98475 * 179.72260 * 7 5 4 24 24 C 1.39678 * 119.99800 * 90.00090 * 3 2 1 25 25 C 1.38911 * 120.07522 * 179.72542 * 24 3 2 26 26 C 1.38107 * 119.92465 * 179.76998 * 25 24 3 27 27 C 1.38282 * 120.07264 * 0.50605 * 26 25 24 28 28 C 1.38287 * 120.15396 * 359.74703 * 27 26 25 29 29 C 1.38109 * 120.07079 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 35 35 H 1.08987 * 109.47905 * 210.00002 * 4 3 2 36 36 H 1.09002 * 109.46739 * 330.00111 * 4 3 2 37 37 H 1.09009 * 109.68106 * 249.16928 * 8 7 5 38 38 H 1.08998 * 109.68233 * 9.68187 * 8 7 5 39 39 H 1.09000 * 109.51137 * 172.22562 * 9 8 7 40 40 H 1.09006 * 109.50603 * 292.32451 * 9 8 7 41 41 H 1.09002 * 109.46881 * 185.00028 * 13 11 10 42 42 H 1.09004 * 109.47170 * 305.00017 * 13 11 10 43 43 H 0.97000 * 119.99907 * 359.97438 * 14 13 11 44 44 H 0.96996 * 120.00425 * 180.02562 * 18 17 15 45 45 H 1.09006 * 109.67950 * 350.28073 * 23 7 5 46 46 H 1.09000 * 109.68822 * 110.82660 * 23 7 5 47 47 H 1.07999 * 120.03716 * 0.02562 * 25 24 3 48 48 H 1.07998 * 119.96389 * 180.25571 * 26 25 24 49 49 H 1.08005 * 119.92548 * 179.77061 * 27 26 25 50 50 H 1.07995 * 119.96400 * 180.02562 * 28 27 26 51 51 H 1.08001 * 120.03469 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0720 -1.2686 5 6 1.0066 2.7823 -1.7036 6 8 0.0063 2.7183 -1.0209 7 7 0.9951 3.4888 -2.8513 8 6 2.1963 3.5805 -3.6965 9 6 1.8038 3.2240 -5.1348 10 8 0.6869 4.0239 -5.5301 11 6 -0.4938 3.8044 -4.7544 12 1 -0.7728 2.7520 -4.8057 13 6 -1.6341 4.6629 -5.3055 14 7 -1.9717 4.2159 -6.6591 15 6 -2.9699 4.8410 -7.3576 16 1 -3.5081 5.6638 -6.9108 17 6 -3.2893 4.4178 -8.6405 18 7 -2.6324 3.4160 -9.1857 19 14 -4.6516 5.2701 -9.5931 20 1 -5.2304 6.3572 -8.7634 21 1 -4.0959 5.8444 -10.8447 22 1 -5.7118 4.2858 -9.9282 23 6 -0.2208 4.1857 -3.2997 24 6 2.2511 2.0396 1.2097 25 6 2.7196 3.3473 1.2116 26 6 2.9442 3.9970 2.4094 27 6 2.7132 3.3435 3.6060 28 6 2.2518 2.0399 3.6078 29 6 2.0197 1.3863 2.4135 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.0643 2.7985 -1.1383 36 1 2.5506 1.3453 -2.0283 37 1 2.5909 4.5962 -3.6646 38 1 2.9519 2.8818 -3.3375 39 1 2.6447 3.4186 -5.8004 40 1 1.5341 2.1691 -5.1876 41 1 -2.5079 4.5632 -4.6615 42 1 -1.3216 5.7068 -5.3349 43 1 -1.4875 3.4777 -7.0609 44 1 -2.8554 3.1206 -10.0823 45 1 -1.0653 3.8871 -2.6785 46 1 -0.0742 5.2634 -3.2272 47 1 2.9040 3.8568 0.2773 48 1 3.3045 5.0151 2.4116 49 1 2.8932 3.8526 4.5414 50 1 2.0721 1.5327 4.5441 51 1 1.6589 0.3683 2.4156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502095033.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:44 Heat of formation + Delta-G solvation = -14.359227 kcal Electronic energy + Delta-G solvation = -30978.646950 eV Core-core repulsion = 26879.177507 eV Total energy + Delta-G solvation = -4099.469443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.69770 -39.64439 -38.32207 -36.46987 -35.08874 -34.41039 -32.42451 -32.02267 -30.87709 -30.43085 -29.93180 -28.20329 -26.98846 -25.23657 -23.60370 -23.54001 -22.67690 -22.16659 -21.06095 -20.69592 -19.29261 -18.09513 -17.54330 -17.08025 -16.72535 -16.24720 -15.92324 -15.58819 -15.45861 -15.11282 -14.78505 -14.50756 -14.48943 -14.20841 -14.01264 -13.85847 -13.57433 -13.28048 -13.17966 -13.11414 -12.76146 -12.67868 -12.49318 -12.38218 -12.16316 -11.95566 -11.64112 -11.53428 -11.27198 -11.04489 -10.91002 -10.89444 -10.81574 -10.49491 -10.40804 -10.03970 -9.92493 -9.76465 -9.64665 -9.08505 -8.87967 -8.56986 -7.54105 -6.90020 -5.73722 -3.02410 1.27549 1.43723 2.44158 2.50872 2.95514 3.45259 3.50655 3.53078 3.74017 3.89567 4.26010 4.48686 4.53633 4.57363 4.68840 4.71840 4.80545 4.86185 4.88652 5.00822 5.01606 5.10925 5.14396 5.21331 5.26981 5.28610 5.32288 5.41550 5.49734 5.59306 5.61157 5.62351 5.65469 5.76602 5.85280 5.86333 5.93283 6.06334 6.21973 6.25572 6.28827 6.33627 6.47053 6.54606 6.65866 6.68069 6.92374 7.19919 7.26345 7.42597 7.72051 8.02227 8.44351 9.56174 10.12913 10.48750 11.49179 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020874 B = 0.002055 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.035646 B =13623.530649 C =13725.787131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.608 5.608 4 C 0.107 3.893 5 C 0.489 3.511 6 O -0.518 6.518 7 N -0.615 5.615 8 C 0.071 3.929 9 C 0.046 3.954 10 O -0.357 6.357 11 C 0.075 3.925 12 H 0.062 0.938 13 C 0.163 3.837 14 N -0.726 5.726 15 C -0.238 4.238 16 H 0.071 0.929 17 C -0.015 4.015 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.087 3.913 24 C 0.227 3.773 25 C -0.195 4.195 26 C -0.072 4.072 27 C -0.182 4.182 28 C -0.074 4.074 29 C -0.193 4.193 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.053 0.947 41 H 0.036 0.964 42 H 0.030 0.970 43 H 0.387 0.613 44 H 0.254 0.746 45 H 0.100 0.900 46 H 0.076 0.924 47 H 0.115 0.885 48 H 0.118 0.882 49 H 0.115 0.885 50 H 0.118 0.882 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.372 -5.626 23.079 29.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.001 4.001 3 N -0.318 5.318 4 C -0.021 4.021 5 C 0.275 3.725 6 O -0.393 6.393 7 N -0.351 5.351 8 C -0.052 4.052 9 C -0.033 4.033 10 O -0.275 6.275 11 C 0.016 3.984 12 H 0.080 0.920 13 C 0.035 3.965 14 N -0.371 5.371 15 C -0.369 4.369 16 H 0.089 0.911 17 C -0.211 4.211 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.036 4.036 24 C 0.126 3.874 25 C -0.218 4.218 26 C -0.091 4.091 27 C -0.202 4.202 28 C -0.093 4.093 29 C -0.216 4.216 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.123 0.877 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.221 0.779 44 H 0.064 0.936 45 H 0.118 0.882 46 H 0.094 0.906 47 H 0.133 0.867 48 H 0.136 0.864 49 H 0.134 0.866 50 H 0.136 0.864 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.670 -5.530 23.123 29.037 hybrid contribution -0.592 0.105 -0.706 0.927 sum 16.078 -5.425 22.417 28.115 Atomic orbital electron populations 1.22233 0.95551 1.01115 1.03957 1.21462 0.94877 0.81360 1.02357 1.46162 1.71151 1.12805 1.01659 1.21326 0.95443 0.98012 0.87328 1.21457 0.91301 0.79236 0.80496 1.90714 1.34967 1.60729 1.52872 1.48247 1.12975 1.51513 1.22339 1.22527 0.87288 1.03123 0.92303 1.22903 0.91053 0.95575 0.93728 1.88171 1.19397 1.63009 1.56921 1.22702 0.86614 1.00381 0.88726 0.92006 1.20616 0.91621 0.95625 0.88620 1.42231 1.42302 1.40738 1.11814 1.19271 1.09512 1.11819 0.96318 0.91071 1.24749 1.00051 0.98826 0.97436 1.69682 1.43482 1.29166 1.15754 0.86100 0.81465 0.78596 0.79937 1.20532 1.21868 1.21906 1.22213 0.88025 0.97210 0.96192 1.17755 0.92757 0.91377 0.85542 1.20626 1.08463 0.94140 0.98530 1.20865 0.97249 0.99002 0.91993 1.20885 1.05827 0.95711 0.97750 1.20879 0.96711 0.94598 0.97122 1.20664 1.08971 1.00877 0.91040 0.92244 0.92521 0.91389 0.90526 0.90976 0.87814 0.87830 0.90193 0.89393 0.87743 0.92863 0.94682 0.95262 0.77939 0.93613 0.88159 0.90566 0.86690 0.86360 0.86643 0.86356 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 9.50 37.16 0.35 -1.38 16 2 C 0.12 1.00 5.92 -4.04 -0.02 0.98 16 3 N -0.61 -5.82 2.16 -173.13 -0.37 -6.19 16 4 C 0.11 0.90 4.06 -5.19 -0.02 0.88 16 5 C 0.49 5.91 7.69 -10.98 -0.08 5.82 16 6 O -0.52 -8.20 13.49 5.56 0.07 -8.13 16 7 N -0.61 -7.24 3.03 -172.56 -0.52 -7.76 16 8 C 0.07 0.63 6.54 -3.54 -0.02 0.60 16 9 C 0.05 0.52 6.98 37.31 0.26 0.78 16 10 O -0.36 -6.03 10.33 -35.23 -0.36 -6.39 16 11 C 0.07 1.26 2.79 -26.81 -0.07 1.18 16 12 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 13 C 0.16 3.37 5.93 -4.04 -0.02 3.34 16 14 N -0.73 -18.98 5.55 -59.91 -0.33 -19.32 16 15 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 16 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 19 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 C 0.09 1.23 5.90 -3.77 -0.02 1.21 16 24 C 0.23 2.40 6.55 -83.78 -0.55 1.85 16 25 C -0.20 -2.02 9.21 -39.38 -0.36 -2.39 16 26 C -0.07 -0.69 10.04 -39.61 -0.40 -1.09 16 27 C -0.18 -1.65 10.04 -39.55 -0.40 -2.05 16 28 C -0.07 -0.67 10.04 -39.61 -0.40 -1.07 16 29 C -0.19 -1.90 9.21 -39.38 -0.36 -2.27 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.88 6.39 -51.93 -0.33 0.54 16 33 H 0.08 0.53 6.20 -51.93 -0.32 0.21 16 34 H 0.07 0.48 7.89 -51.93 -0.41 0.07 16 35 H 0.10 0.70 6.06 -51.94 -0.31 0.39 16 36 H 0.10 0.64 7.41 -51.93 -0.38 0.25 16 37 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 38 H 0.09 0.48 6.05 -51.93 -0.31 0.16 16 39 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.39 10.72 7.67 -40.82 -0.31 10.40 16 44 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.10 1.53 7.08 -51.93 -0.37 1.16 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.12 1.09 6.14 -52.49 -0.32 0.76 16 48 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 49 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 50 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 51 H 0.12 1.03 6.14 -52.49 -0.32 0.71 16 LS Contribution 405.02 15.07 6.10 6.10 Total: -1.00 -35.37 405.02 -10.11 -45.47 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -8.02 Total: 7.53 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.37 Total: -1.07 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.50 Total: -61.22 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.29 Total: -14.52 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.37 -10.11 -45.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502095033.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.114 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds