Wall clock time and date at job start Wed Apr 1 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46500 * 120.00784 * 270.00147 * 3 2 1 5 5 C 1.50700 * 109.46725 * 89.99497 * 4 3 2 6 6 O 1.21280 * 120.00237 * 0.02562 * 5 4 3 7 7 N 1.34783 * 119.99755 * 180.02562 * 5 4 3 8 8 C 1.47153 * 120.98222 * 0.02562 * 7 5 4 9 9 C 1.53291 * 108.38594 * 129.44762 * 8 7 5 10 10 O 1.42959 * 109.22742 * 52.29985 * 9 8 7 11 11 C 1.42963 * 114.16160 * 297.42329 * 10 9 8 12 12 H 1.08998 * 109.51768 * 302.65035 * 11 10 9 13 13 C 1.53008 * 109.50746 * 182.55297 * 11 10 9 14 14 N 1.46494 * 109.47310 * 65.00066 * 13 11 10 15 15 C 1.36930 * 120.00403 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99884 * 0.02562 * 15 14 13 17 17 C 1.38806 * 120.00435 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00164 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 120.00460 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46514 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47300 * 119.99449 * 19 17 15 22 22 H 1.48493 * 109.47134 * 239.99991 * 19 17 15 23 23 C 1.47145 * 120.98475 * 179.72260 * 7 5 4 24 24 C 1.39678 * 119.99800 * 90.00090 * 3 2 1 25 25 C 1.38911 * 120.07522 * 179.72542 * 24 3 2 26 26 C 1.38107 * 119.92465 * 179.76998 * 25 24 3 27 27 C 1.38282 * 120.07264 * 0.50605 * 26 25 24 28 28 C 1.38287 * 120.15396 * 359.74703 * 27 26 25 29 29 C 1.38109 * 120.07079 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 35 35 H 1.08987 * 109.47905 * 210.00002 * 4 3 2 36 36 H 1.09002 * 109.46739 * 330.00111 * 4 3 2 37 37 H 1.09009 * 109.68106 * 249.16928 * 8 7 5 38 38 H 1.08998 * 109.68233 * 9.68187 * 8 7 5 39 39 H 1.09000 * 109.51137 * 172.22562 * 9 8 7 40 40 H 1.09006 * 109.50603 * 292.32451 * 9 8 7 41 41 H 1.09002 * 109.46881 * 185.00028 * 13 11 10 42 42 H 1.09004 * 109.47170 * 305.00017 * 13 11 10 43 43 H 0.97000 * 119.99907 * 359.97438 * 14 13 11 44 44 H 0.96996 * 120.00425 * 180.02562 * 18 17 15 45 45 H 1.09006 * 109.67950 * 350.28073 * 23 7 5 46 46 H 1.09000 * 109.68822 * 110.82660 * 23 7 5 47 47 H 1.07999 * 120.03716 * 0.02562 * 25 24 3 48 48 H 1.07998 * 119.96389 * 180.25571 * 26 25 24 49 49 H 1.08005 * 119.92548 * 179.77061 * 27 26 25 50 50 H 1.07995 * 119.96400 * 180.02562 * 28 27 26 51 51 H 1.08001 * 120.03469 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0720 -1.2686 5 6 1.0066 2.7823 -1.7036 6 8 0.0063 2.7183 -1.0209 7 7 0.9951 3.4888 -2.8513 8 6 2.1963 3.5805 -3.6965 9 6 1.8038 3.2240 -5.1348 10 8 0.6869 4.0239 -5.5301 11 6 -0.4938 3.8044 -4.7544 12 1 -0.7728 2.7520 -4.8057 13 6 -1.6341 4.6629 -5.3055 14 7 -1.9717 4.2159 -6.6591 15 6 -2.9699 4.8410 -7.3576 16 1 -3.5081 5.6638 -6.9108 17 6 -3.2893 4.4178 -8.6405 18 7 -2.6324 3.4160 -9.1857 19 14 -4.6516 5.2701 -9.5931 20 1 -5.2304 6.3572 -8.7634 21 1 -4.0959 5.8444 -10.8447 22 1 -5.7118 4.2858 -9.9282 23 6 -0.2208 4.1857 -3.2997 24 6 2.2511 2.0396 1.2097 25 6 2.7196 3.3473 1.2116 26 6 2.9442 3.9970 2.4094 27 6 2.7132 3.3435 3.6060 28 6 2.2518 2.0399 3.6078 29 6 2.0197 1.3863 2.4135 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.0643 2.7985 -1.1383 36 1 2.5506 1.3453 -2.0283 37 1 2.5909 4.5962 -3.6646 38 1 2.9519 2.8818 -3.3375 39 1 2.6447 3.4186 -5.8004 40 1 1.5341 2.1691 -5.1876 41 1 -2.5079 4.5632 -4.6615 42 1 -1.3216 5.7068 -5.3349 43 1 -1.4875 3.4777 -7.0609 44 1 -2.8554 3.1206 -10.0823 45 1 -1.0653 3.8871 -2.6785 46 1 -0.0742 5.2634 -3.2272 47 1 2.9040 3.8568 0.2773 48 1 3.3045 5.0151 2.4116 49 1 2.8932 3.8526 4.5414 50 1 2.0721 1.5327 4.5441 51 1 1.6589 0.3683 2.4156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502095033.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:43 Heat of formation + Delta-G solvation = -37.095185 kcal Electronic energy + Delta-G solvation = -30979.632855 eV Core-core repulsion = 26879.177507 eV Total energy + Delta-G solvation = -4100.455348 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.60941 -40.47394 -39.36400 -37.19803 -36.68043 -35.72585 -33.98686 -32.86940 -32.00205 -31.53319 -30.78462 -29.28398 -28.08433 -26.61052 -24.91946 -24.33224 -23.93366 -23.05679 -22.34713 -21.52767 -20.17539 -19.26707 -18.78395 -18.33665 -17.79796 -17.26455 -16.86855 -16.68844 -16.44764 -16.15753 -15.99544 -15.80533 -15.37206 -15.30133 -15.03732 -14.74625 -14.67986 -14.55925 -14.33145 -14.13867 -13.93327 -13.84119 -13.46344 -13.38716 -13.09712 -12.97697 -12.82694 -12.69958 -12.59294 -12.25120 -12.20654 -12.04174 -11.98592 -11.89025 -11.64166 -11.55130 -11.25947 -11.13132 -10.98978 -10.56101 -9.78070 -9.60480 -9.03568 -8.24251 -7.96284 -5.26020 0.57953 0.73138 1.46495 1.47958 1.54950 1.58230 1.70244 2.20433 2.54752 2.75232 3.03792 3.37620 3.44567 3.58483 3.87101 3.89600 3.91446 3.97226 4.05062 4.12036 4.16401 4.23432 4.27008 4.34104 4.37054 4.41579 4.46438 4.49649 4.57717 4.62657 4.64741 4.66163 4.74530 4.79666 4.88095 4.90613 4.93676 4.99977 5.06441 5.19047 5.24911 5.38611 5.42814 5.46679 5.64540 5.78583 5.99619 6.19812 6.23052 6.26453 6.38757 6.55838 7.11686 7.31367 8.04404 8.29628 9.27560 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020874 B = 0.002055 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.035646 B =13623.530649 C =13725.787131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 N -0.611 5.611 4 C 0.109 3.891 5 C 0.486 3.514 6 O -0.563 6.563 7 N -0.615 5.615 8 C 0.075 3.925 9 C 0.035 3.965 10 O -0.389 6.389 11 C 0.092 3.908 12 H 0.045 0.955 13 C 0.160 3.840 14 N -0.740 5.740 15 C -0.247 4.247 16 H 0.077 0.923 17 C -0.077 4.077 18 N -0.969 5.969 19 Si 0.978 3.022 20 H -0.266 1.266 21 H -0.291 1.291 22 H -0.292 1.292 23 C 0.098 3.902 24 C 0.210 3.790 25 C -0.211 4.211 26 C -0.083 4.083 27 C -0.191 4.191 28 C -0.082 4.082 29 C -0.207 4.207 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.037 0.963 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.135 0.865 37 H 0.092 0.908 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.052 0.948 41 H 0.040 0.960 42 H 0.030 0.970 43 H 0.375 0.625 44 H 0.252 0.748 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.121 0.879 48 H 0.134 0.866 49 H 0.133 0.867 50 H 0.138 0.862 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.206 -5.577 24.082 31.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.001 4.001 3 N -0.321 5.321 4 C -0.018 4.018 5 C 0.274 3.726 6 O -0.440 6.440 7 N -0.350 5.350 8 C -0.047 4.047 9 C -0.041 4.041 10 O -0.308 6.308 11 C 0.033 3.967 12 H 0.063 0.937 13 C 0.033 3.967 14 N -0.382 5.382 15 C -0.379 4.379 16 H 0.095 0.905 17 C -0.269 4.269 18 N -0.620 5.620 19 Si 0.806 3.194 20 H -0.190 1.190 21 H -0.218 1.218 22 H -0.219 1.219 23 C -0.026 4.026 24 C 0.109 3.891 25 C -0.234 4.234 26 C -0.102 4.102 27 C -0.211 4.211 28 C -0.100 4.100 29 C -0.229 4.229 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.110 0.890 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.207 0.793 44 H 0.060 0.940 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.139 0.861 48 H 0.152 0.848 49 H 0.151 0.849 50 H 0.155 0.845 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.538 -5.463 24.162 30.940 hybrid contribution -1.132 0.089 -0.945 1.477 sum 17.406 -5.374 23.217 29.511 Atomic orbital electron populations 1.22147 0.97436 1.01234 1.01272 1.21572 0.93151 0.81284 1.04135 1.46298 1.70919 1.13136 1.01712 1.21534 0.93679 0.98957 0.87666 1.22262 0.92052 0.78504 0.79799 1.90703 1.36922 1.62169 1.54246 1.48346 1.12880 1.51035 1.22767 1.22719 0.86747 1.05173 0.90021 1.23255 0.89868 0.94900 0.96124 1.88102 1.20425 1.64375 1.57874 1.22298 0.86053 0.98323 0.90067 0.93706 1.20752 0.93428 0.96216 0.86329 1.42413 1.41828 1.40383 1.13619 1.19690 1.09750 1.11685 0.96733 0.90489 1.25628 1.02807 0.99890 0.98606 1.69840 1.45316 1.30848 1.15961 0.85014 0.78364 0.77712 0.78295 1.18988 1.21844 1.21917 1.21863 0.89163 0.97698 0.93923 1.17991 0.93131 0.91784 0.86215 1.20823 1.09023 0.94345 0.99171 1.21156 0.97134 0.99852 0.92016 1.21188 1.05509 0.95923 0.98471 1.21193 0.96220 0.94836 0.97798 1.20893 1.09199 1.01504 0.91293 0.94465 0.90986 0.94378 0.89078 0.88802 0.85520 0.84725 0.88982 0.85000 0.85407 0.93005 0.94274 0.95228 0.79322 0.93953 0.89755 0.90039 0.86089 0.84815 0.84926 0.84453 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.50 71.98 0.68 -2.59 16 2 C 0.12 1.77 5.92 86.38 0.51 2.28 16 3 N -0.61 -10.55 2.16 -701.66 -1.51 -12.06 16 4 C 0.11 1.53 4.06 85.63 0.35 1.88 16 5 C 0.49 11.13 7.69 87.66 0.67 11.80 16 6 O -0.56 -18.03 13.49 -3.03 -0.04 -18.07 16 7 N -0.62 -13.60 3.03 -818.23 -2.48 -16.08 16 8 C 0.08 1.10 6.54 86.35 0.57 1.67 16 9 C 0.04 0.75 6.98 72.08 0.50 1.25 16 10 O -0.39 -13.05 10.33 -148.98 -1.54 -14.59 16 11 C 0.09 3.15 2.79 30.54 0.09 3.23 16 12 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 13 C 0.16 6.74 5.93 86.38 0.51 7.25 16 14 N -0.74 -39.60 5.55 -343.46 -1.91 -41.51 16 15 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 16 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 17 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 18 N -0.97 -60.74 13.06 21.65 0.28 -60.46 16 19 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 23 C 0.10 2.78 5.90 86.20 0.51 3.29 16 24 C 0.21 4.18 6.55 38.21 0.25 4.43 16 25 C -0.21 -4.09 9.21 22.40 0.21 -3.88 16 26 C -0.08 -1.47 10.04 22.25 0.22 -1.24 16 27 C -0.19 -3.20 10.04 22.29 0.22 -2.98 16 28 C -0.08 -1.38 10.04 22.25 0.22 -1.16 16 29 C -0.21 -3.85 9.21 22.40 0.21 -3.64 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.04 1.00 6.39 -2.38 -0.02 0.98 16 33 H 0.09 1.07 6.20 -2.39 -0.01 1.06 16 34 H 0.09 0.97 7.89 -2.39 -0.02 0.95 16 35 H 0.13 1.23 6.06 -2.39 -0.01 1.21 16 36 H 0.14 1.07 7.41 -2.39 -0.02 1.05 16 37 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.13 0.79 6.05 -2.39 -0.01 0.77 16 39 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.37 21.48 7.67 -92.71 -0.71 20.77 16 44 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.08 2.67 7.08 -2.38 -0.02 2.65 16 46 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.12 2.06 6.14 -2.91 -0.02 2.04 16 48 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 49 H 0.13 1.66 8.06 -2.91 -0.02 1.63 16 50 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 51 H 0.13 2.05 6.14 -2.91 -0.02 2.04 16 Total: -1.00 -79.29 405.02 2.09 -77.20 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.22 Total: 32.40 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 7.03 Total: 4.04 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -5.61 Total: -130.11 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -1.58 Total: -32.66 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -79.29 2.09 -77.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502095033.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.103 kcal (2) G-P(sol) polarization free energy of solvation -79.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds