Wall clock time and date at job start Wed Apr 1 2020 04:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47252 * 2 1 4 4 C 1.36931 * 120.00258 * 263.59965 * 3 2 1 5 5 H 1.08007 * 120.00104 * 194.84745 * 4 3 2 6 6 C 1.38806 * 120.00053 * 14.83734 * 4 3 2 7 7 N 1.31621 * 119.99832 * 24.15590 * 6 4 3 8 8 Si 1.86801 * 120.00459 * 204.14911 * 6 4 3 9 9 H 1.48501 * 109.47098 * 90.00144 * 8 6 4 10 10 H 1.48492 * 109.47600 * 210.00275 * 8 6 4 11 11 H 1.48501 * 109.47065 * 330.00746 * 8 6 4 12 12 C 1.46505 * 119.99634 * 83.59869 * 3 2 1 13 13 C 1.52994 * 109.47358 * 85.16458 * 12 3 2 14 14 C 1.53033 * 109.46138 * 178.11011 * 13 12 3 15 15 C 1.53198 * 109.31412 * 178.60967 * 14 13 12 16 16 N 1.46930 * 108.77345 * 54.63508 * 15 14 13 17 17 C 1.34771 * 120.62934 * 126.11237 * 16 15 14 18 18 O 1.21622 * 120.00342 * 359.24558 * 17 16 15 19 19 C 1.47292 * 120.00238 * 179.24149 * 17 16 15 20 20 C 1.37991 * 120.88057 * 317.26629 * 19 17 16 21 21 N 1.34344 * 120.37123 * 179.73312 * 20 19 17 22 22 C 1.46504 * 118.80531 * 180.24036 * 21 20 19 23 23 C 1.35576 * 122.39190 * 0.53517 * 21 20 19 24 24 C 1.34868 * 121.79585 * 359.75169 * 23 21 20 25 25 C 1.41667 * 119.34448 * 359.97438 * 24 23 21 26 26 O 1.22085 * 121.07144 * 179.97438 * 25 24 23 27 27 C 1.46923 * 118.74018 * 306.39358 * 16 15 14 28 28 C 1.53039 * 109.46097 * 58.03904 * 13 12 3 29 29 H 1.09003 * 109.47298 * 61.64613 * 1 2 3 30 30 H 1.09000 * 109.47590 * 181.64824 * 1 2 3 31 31 H 1.09008 * 109.47136 * 301.64730 * 1 2 3 32 32 H 1.08999 * 109.47085 * 240.00388 * 2 1 3 33 33 H 1.09001 * 109.47539 * 120.00266 * 2 1 3 34 34 H 0.97007 * 119.99688 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.46974 * 325.15603 * 12 3 2 36 36 H 1.09000 * 109.46499 * 205.16082 * 12 3 2 37 37 H 1.09003 * 109.44582 * 298.07432 * 13 12 3 38 38 H 1.08999 * 109.49995 * 58.66079 * 14 13 12 39 39 H 1.08997 * 109.52723 * 298.58167 * 14 13 12 40 40 H 1.09001 * 109.58744 * 294.85020 * 15 14 13 41 41 H 1.09000 * 109.70321 * 174.49184 * 15 14 13 42 42 H 1.08003 * 119.81285 * 359.96973 * 20 19 17 43 43 H 1.09001 * 109.47270 * 270.28684 * 22 21 20 44 44 H 1.09007 * 109.46738 * 30.28341 * 22 21 20 45 45 H 1.08997 * 109.46931 * 150.27847 * 22 21 20 46 46 H 1.07998 * 119.10846 * 179.73234 * 23 21 20 47 47 H 1.08008 * 120.33041 * 180.02562 * 24 23 21 48 48 H 1.09001 * 109.58787 * 173.39567 * 27 16 15 49 49 H 1.09002 * 109.58706 * 293.82053 * 27 16 15 50 50 H 1.08998 * 109.49795 * 301.33583 * 28 13 12 51 51 H 1.08997 * 109.49881 * 61.43881 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3712 1.9827 -1.1784 5 1 2.9485 2.8955 -1.1672 6 6 1.9873 1.4192 -2.3875 7 7 0.9354 0.6298 -2.4411 8 14 2.9633 1.7812 -3.9386 9 1 4.0397 0.7700 -4.0934 10 1 2.0600 1.7266 -5.1159 11 1 3.5662 3.1347 -3.8394 12 6 2.1291 2.1189 1.2609 13 6 3.4728 1.8026 1.9205 14 6 3.6084 2.6093 3.2139 15 6 4.9394 2.2640 3.8893 16 7 6.0282 2.4798 2.9265 17 6 7.0741 3.2704 3.2386 18 8 7.1163 3.8242 4.3206 19 6 8.1661 3.4638 2.2694 20 6 8.6706 2.4002 1.5493 21 7 9.6632 2.5892 0.6639 22 6 10.1692 1.4368 -0.0858 23 6 10.2177 3.8066 0.4433 24 6 9.7993 4.9076 1.1004 25 6 8.7520 4.7948 2.0476 26 8 8.3490 5.7706 2.6606 27 6 5.9520 1.8224 1.6148 28 6 4.6096 2.1725 0.9650 29 1 -0.3634 0.4881 -0.9044 30 1 -0.3634 -1.0272 0.0296 31 1 -0.3634 0.5392 0.8749 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.6669 0.2363 -3.2861 35 1 1.3187 1.8234 1.9272 36 1 2.0647 3.1888 1.0627 37 1 3.5230 0.7381 2.1496 38 1 2.7854 2.3625 3.8846 39 1 3.5829 3.6743 2.9833 40 1 4.9302 1.2201 4.2025 41 1 5.0877 2.9050 4.7583 42 1 8.2625 1.4110 1.6955 43 1 10.9838 0.9714 0.4692 44 1 9.3658 0.7137 -0.2266 45 1 10.5345 1.7678 -1.0580 46 1 11.0163 3.8972 -0.2780 47 1 10.2577 5.8660 0.9057 48 1 6.7670 2.1737 0.9821 49 1 6.0253 0.7423 1.7426 50 1 4.4991 1.6148 0.0350 51 1 4.5749 3.2415 0.7550 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505397550.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:36 Heat of formation + Delta-G solvation = 3.941371 kcal Electronic energy + Delta-G solvation = -31944.237007 eV Core-core repulsion = 27845.561138 eV Total energy + Delta-G solvation = -4098.675869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.37043 -39.68822 -38.09679 -37.34331 -35.72655 -33.50903 -32.75277 -32.20357 -30.85220 -30.56276 -29.09993 -27.41873 -26.70043 -25.03317 -23.68296 -23.51328 -22.55132 -22.38812 -20.87802 -19.79582 -19.03259 -17.95529 -17.53402 -17.08801 -16.59203 -16.24062 -15.84030 -15.55083 -15.02370 -14.83034 -14.66303 -14.19886 -13.92634 -13.88394 -13.77333 -13.52518 -13.34860 -13.33137 -13.14640 -12.83147 -12.81069 -12.49031 -12.30847 -12.03192 -11.78004 -11.70655 -11.25271 -11.00724 -10.91291 -10.82344 -10.54513 -10.34318 -10.25195 -10.06263 -10.01881 -9.88397 -9.67088 -9.56894 -9.29409 -9.21692 -8.47797 -8.39634 -8.11785 -6.79326 -5.74391 -3.10921 0.74345 1.10544 2.09261 2.84771 3.15248 3.33271 3.41996 3.43412 3.68143 3.92350 4.15050 4.37797 4.47212 4.47994 4.57169 4.81098 4.88612 4.99502 5.00745 5.17062 5.25981 5.33397 5.37985 5.41367 5.46589 5.53658 5.60523 5.72307 5.82632 5.98007 6.08109 6.17175 6.20434 6.29078 6.37737 6.49393 6.49896 6.52882 6.59737 6.69512 6.73614 6.88307 7.00540 7.02994 7.08629 7.21257 7.56503 7.62880 7.74688 8.03196 8.19791 8.38522 8.38992 9.27041 9.88365 10.36164 11.27009 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010736 B = 0.003493 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.429858 B = 8015.251010 C = 9618.299740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.176 3.824 3 N -0.596 5.596 4 C -0.243 4.243 5 H 0.072 0.928 6 C -0.003 4.003 7 N -0.895 5.895 8 Si 0.891 3.109 9 H -0.291 1.291 10 H -0.294 1.294 11 H -0.281 1.281 12 C 0.155 3.845 13 C -0.103 4.103 14 C -0.129 4.129 15 C 0.117 3.883 16 N -0.607 5.607 17 C 0.580 3.420 18 O -0.528 6.528 19 C -0.293 4.293 20 C 0.167 3.833 21 N -0.476 5.476 22 C 0.054 3.946 23 C 0.129 3.871 24 C -0.269 4.269 25 C 0.410 3.590 26 O -0.492 6.492 27 C 0.095 3.905 28 C -0.119 4.119 29 H 0.105 0.895 30 H 0.015 0.985 31 H 0.009 0.991 32 H 0.071 0.929 33 H 0.001 0.999 34 H 0.250 0.750 35 H 0.033 0.967 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.171 0.829 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.165 0.835 47 H 0.153 0.847 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.100 0.900 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.854 -3.400 4.026 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.051 3.949 3 N -0.317 5.317 4 C -0.372 4.372 5 H 0.090 0.910 6 C -0.200 4.200 7 N -0.541 5.541 8 Si 0.722 3.278 9 H -0.218 1.218 10 H -0.220 1.220 11 H -0.207 1.207 12 C 0.028 3.972 13 C -0.125 4.125 14 C -0.168 4.168 15 C -0.005 4.005 16 N -0.341 5.341 17 C 0.368 3.632 18 O -0.404 6.404 19 C -0.304 4.304 20 C 0.037 3.963 21 N -0.163 5.163 22 C -0.088 4.088 23 C 0.005 3.995 24 C -0.293 4.293 25 C 0.296 3.704 26 O -0.374 6.374 27 C -0.027 4.027 28 C -0.157 4.157 29 H 0.123 0.877 30 H 0.034 0.966 31 H 0.028 0.972 32 H 0.090 0.910 33 H 0.020 0.980 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.188 0.812 43 H 0.099 0.901 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.182 0.818 47 H 0.171 0.829 48 H 0.096 0.904 49 H 0.084 0.916 50 H 0.119 0.881 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.661 -2.806 4.664 19.438 hybrid contribution 0.411 -0.070 -1.107 1.183 sum 19.072 -2.876 3.557 19.612 Atomic orbital electron populations 1.22516 0.99301 0.97859 1.02271 1.20498 0.92562 0.84657 0.97174 1.44131 1.75807 1.10164 1.01590 1.19251 1.26613 1.08002 0.83382 0.91050 1.24751 0.97075 1.00916 0.97235 1.70069 1.22700 1.36767 1.24579 0.86432 0.80006 0.77724 0.83682 1.21839 1.22041 1.20702 1.20732 0.92615 0.95771 0.88116 1.21743 0.98300 0.98844 0.93568 1.21944 0.95950 1.01089 0.97772 1.21578 0.85866 1.00989 0.92080 1.48090 1.21277 1.48234 1.16527 1.17503 0.81328 0.78247 0.86087 1.90775 1.78620 1.47462 1.23565 1.22407 1.05412 0.96502 1.06076 1.22343 0.86708 1.00318 0.86962 1.42684 1.30261 1.09101 1.34244 1.22518 1.01730 0.87405 0.97124 1.21703 0.96269 0.83655 0.97914 1.22436 1.04064 0.99245 1.03548 1.18159 0.82788 0.87133 0.82277 1.90804 1.60655 1.39369 1.46596 1.22213 1.00434 0.96577 0.83518 1.21914 0.91615 1.02145 1.00050 0.87719 0.96607 0.97193 0.91027 0.98030 0.93923 0.94915 0.93554 0.92050 0.91152 0.91750 0.91824 0.89412 0.81160 0.90110 0.88727 0.88784 0.81808 0.82904 0.90419 0.91551 0.88131 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 9.76 37.16 0.36 -3.28 16 2 C 0.18 4.02 5.61 -4.04 -0.02 4.00 16 3 N -0.60 -13.64 2.17 -173.24 -0.38 -14.02 16 4 C -0.24 -6.10 7.88 -15.06 -0.12 -6.22 16 5 H 0.07 1.79 7.71 -52.48 -0.40 1.39 16 6 C 0.00 -0.07 4.82 -17.43 -0.08 -0.15 16 7 N -0.90 -24.10 8.53 55.49 0.47 -23.63 16 8 Si 0.89 20.46 29.62 -169.99 -5.03 15.43 16 9 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.16 3.03 5.24 -4.04 -0.02 3.00 16 13 C -0.10 -1.66 2.41 -90.59 -0.22 -1.88 16 14 C -0.13 -1.86 5.36 -26.61 -0.14 -2.01 16 15 C 0.12 1.63 6.44 -3.71 -0.02 1.61 16 16 N -0.61 -8.81 2.97 -174.08 -0.52 -9.33 16 17 C 0.58 9.79 7.20 -12.58 -0.09 9.70 16 18 O -0.53 -11.06 15.94 -3.01 -0.05 -11.10 16 19 C -0.29 -4.14 5.33 -102.71 -0.55 -4.69 16 20 C 0.17 1.47 7.60 -16.54 -0.13 1.35 16 21 N -0.48 -2.87 2.97 -124.39 -0.37 -3.24 16 22 C 0.05 0.09 10.53 59.85 0.63 0.72 16 23 C 0.13 0.82 10.17 -17.09 -0.17 0.64 16 24 C -0.27 -2.82 10.01 -39.47 -0.40 -3.22 16 25 C 0.41 6.52 6.94 -34.68 -0.24 6.28 16 26 O -0.49 -10.30 17.13 -3.43 -0.06 -10.36 16 27 C 0.09 1.20 5.06 -3.71 -0.02 1.18 16 28 C -0.12 -1.90 4.65 -26.61 -0.12 -2.03 16 29 H 0.10 2.72 5.75 -51.93 -0.30 2.43 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.01 0.20 8.00 -51.92 -0.42 -0.22 16 32 H 0.07 1.80 6.29 -51.93 -0.33 1.48 16 33 H 0.00 0.03 8.12 -51.93 -0.42 -0.39 16 34 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.03 0.63 7.97 -51.93 -0.41 0.21 16 36 H 0.05 0.95 8.00 -51.93 -0.42 0.53 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.09 1.33 7.00 -51.93 -0.36 0.96 16 42 H 0.17 1.08 6.50 -52.48 -0.34 0.74 16 43 H 0.08 0.04 8.14 -51.93 -0.42 -0.39 16 44 H 0.09 0.10 7.96 -51.92 -0.41 -0.31 16 45 H 0.09 0.01 7.96 -51.93 -0.41 -0.41 16 46 H 0.16 0.33 7.97 -52.49 -0.42 -0.09 16 47 H 0.15 1.38 8.06 -52.48 -0.42 0.95 16 48 H 0.08 0.86 4.46 -51.93 -0.23 0.63 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.10 1.82 6.43 -51.93 -0.33 1.49 16 51 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 397.29 15.07 5.99 5.99 Total: -1.00 -36.47 397.29 -9.45 -45.92 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -8.15 Total: -0.66 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -1.35 Total: 5.01 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.79 Total: -50.22 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.11 Total: -21.46 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.47 -9.45 -45.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505397550.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.862 kcal (2) G-P(sol) polarization free energy of solvation -36.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds