Wall clock time and date at job start Wed Apr 1 2020 04:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 109.46966 * 2 1 4 4 C 1.36936 * 119.99633 * 264.04083 * 3 2 1 5 5 H 1.07996 * 120.00004 * 185.74585 * 4 3 2 6 6 C 1.38816 * 120.00170 * 5.75330 * 4 3 2 7 7 N 1.31617 * 120.00095 * 33.40200 * 6 4 3 8 8 Si 1.86805 * 119.99629 * 213.40379 * 6 4 3 9 9 H 1.48504 * 109.46994 * 94.99858 * 8 6 4 10 10 H 1.48504 * 109.46948 * 214.99510 * 8 6 4 11 11 H 1.48493 * 109.47061 * 334.99508 * 8 6 4 12 12 C 1.46496 * 120.00267 * 84.04274 * 3 2 1 13 13 C 1.52994 * 109.47240 * 270.00051 * 12 3 2 14 14 C 1.53043 * 109.45991 * 174.99995 * 13 12 3 15 15 C 1.53192 * 109.31334 * 181.38678 * 14 13 12 16 16 N 1.46925 * 108.77063 * 305.36107 * 15 14 13 17 17 C 1.34777 * 120.63200 * 233.58118 * 16 15 14 18 18 O 1.21608 * 119.99552 * 5.55678 * 17 16 15 19 19 C 1.47453 * 120.00146 * 185.54818 * 17 16 15 20 20 C 1.41605 * 120.25848 * 255.15337 * 19 17 16 21 21 C 1.35968 * 119.00886 * 180.02562 * 20 19 17 22 22 C 1.40756 * 119.50226 * 0.02562 * 21 20 19 23 23 O 1.21969 * 119.75053 * 180.02562 * 22 21 20 24 24 N 1.34544 * 120.50184 * 359.97438 * 22 21 20 25 25 C 1.46507 * 119.47726 * 179.97438 * 24 22 21 26 26 C 1.34595 * 121.04310 * 0.27824 * 24 22 21 27 27 C 1.46928 * 118.74215 * 53.86673 * 16 15 14 28 28 C 1.53038 * 109.45962 * 295.06504 * 13 12 3 29 29 H 1.08991 * 109.47411 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47176 * 300.00749 * 1 2 3 31 31 H 1.09005 * 109.47051 * 60.00114 * 1 2 3 32 32 H 1.09000 * 109.46740 * 239.99835 * 2 1 3 33 33 H 1.08994 * 109.46733 * 119.99517 * 2 1 3 34 34 H 0.96999 * 119.99617 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47131 * 149.99588 * 12 3 2 36 36 H 1.09009 * 109.46834 * 29.99728 * 12 3 2 37 37 H 1.08996 * 109.46460 * 55.02395 * 13 12 3 38 38 H 1.08995 * 109.49700 * 61.42954 * 14 13 12 39 39 H 1.09001 * 109.51892 * 301.34954 * 14 13 12 40 40 H 1.08994 * 109.58671 * 185.57857 * 15 14 13 41 41 H 1.08999 * 109.70806 * 65.21956 * 15 14 13 42 42 H 1.07994 * 120.49129 * 0.04508 * 20 19 17 43 43 H 1.08006 * 120.25222 * 180.02562 * 21 20 19 44 44 H 1.08999 * 109.47179 * 359.97438 * 25 24 22 45 45 H 1.08997 * 109.46800 * 240.00084 * 25 24 22 46 46 H 1.08990 * 109.47094 * 119.99944 * 25 24 22 47 47 H 1.08004 * 119.77021 * 179.74652 * 26 24 22 48 48 H 1.08997 * 109.58765 * 65.91930 * 27 16 15 49 49 H 1.08997 * 109.58844 * 186.35132 * 27 16 15 50 50 H 1.09003 * 109.50178 * 298.56630 * 28 13 12 51 51 H 1.08998 * 109.49866 * 58.66350 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3626 1.9857 -1.1795 5 1 2.8093 2.9690 -1.1722 6 6 2.1374 1.3347 -2.3847 7 7 1.0949 0.5428 -2.5201 8 14 3.3141 1.5825 -3.8142 9 1 4.3222 0.4921 -3.8203 10 1 2.5543 1.5614 -5.0901 11 1 4.0010 2.8910 -3.6688 12 6 2.1384 2.1158 1.2618 13 6 0.8276 2.8497 1.5514 14 6 0.9087 3.5145 2.9275 15 6 -0.4178 4.2190 3.2288 16 7 -0.7223 5.1442 2.1288 17 6 -0.9842 6.4429 2.3763 18 8 -0.8715 6.8815 3.5049 19 6 -1.4074 7.3319 1.2787 20 6 -0.5002 8.2713 0.7312 21 6 -0.9174 9.0789 -0.2800 22 6 -2.2362 8.9652 -0.7587 23 8 -2.6151 9.6871 -1.6659 24 7 -3.0817 8.0656 -0.2238 25 6 -4.4497 7.9668 -0.7389 26 6 -2.6925 7.2592 0.7811 27 6 -0.7419 4.6255 0.7543 28 6 0.5937 3.9174 0.4803 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 0.9377 0.0876 -3.3621 35 1 2.9505 2.8389 1.1855 36 1 2.3495 1.4163 2.0707 37 1 0.0025 2.1376 1.5402 38 1 1.7177 4.2448 2.9316 39 1 1.0988 2.7565 3.6875 40 1 -0.3320 4.7762 4.1616 41 1 -1.2147 3.4805 3.3163 42 1 0.5081 8.3448 1.1109 43 1 -0.2421 9.8021 -0.7127 44 1 -4.5897 8.6927 -1.5398 45 1 -5.1563 8.1727 0.0651 46 1 -4.6209 6.9620 -1.1247 47 1 -3.3895 6.5472 1.1980 48 1 -1.5634 3.9179 0.6425 49 1 -0.8699 5.4509 0.0540 50 1 1.4057 4.6441 0.5074 51 1 0.5594 3.4461 -0.5019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505397714.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:59 Heat of formation + Delta-G solvation = -4.444894 kcal Electronic energy + Delta-G solvation = -31875.722442 eV Core-core repulsion = 27776.682917 eV Total energy + Delta-G solvation = -4099.039525 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.73064 -40.03885 -37.82625 -37.00271 -35.83139 -34.90777 -33.13464 -31.29954 -30.83910 -30.12221 -29.23408 -28.14102 -26.73673 -24.78094 -23.99127 -23.42897 -22.80789 -22.27011 -20.73155 -19.99020 -19.25046 -17.90224 -17.73712 -16.98082 -16.64990 -16.51973 -16.17593 -15.62353 -14.99134 -14.83247 -14.54806 -14.23475 -14.10089 -13.78365 -13.61027 -13.57174 -13.36916 -13.24165 -12.94343 -12.87725 -12.72237 -12.36665 -12.20168 -11.90757 -11.86795 -11.65691 -11.39666 -11.05395 -10.98033 -10.82520 -10.69777 -10.44644 -10.31200 -10.25422 -10.23645 -10.14428 -9.91431 -9.67341 -9.58637 -9.26657 -8.58304 -8.30145 -8.21916 -6.95433 -5.87315 -3.04552 0.52040 1.35252 2.18525 2.55388 3.02157 3.36152 3.38470 3.48142 3.49977 4.16041 4.23558 4.49994 4.56385 4.62526 4.80786 4.84746 5.03550 5.04193 5.12363 5.21136 5.27210 5.28464 5.42129 5.43860 5.61105 5.65665 5.68030 5.69284 5.79362 5.90187 5.92357 6.11244 6.12968 6.14091 6.29532 6.42216 6.50474 6.52677 6.60742 6.65522 6.67123 6.80068 6.89970 7.06117 7.10512 7.16421 7.39579 7.60889 7.70272 7.71354 8.01618 8.07591 8.29354 9.19355 9.86128 10.32096 11.19025 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010256 B = 0.003349 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.339682 B = 8357.629484 C = 9856.306805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.167 3.833 3 N -0.596 5.596 4 C -0.250 4.250 5 H 0.074 0.926 6 C 0.006 3.994 7 N -0.883 5.883 8 Si 0.875 3.125 9 H -0.290 1.290 10 H -0.296 1.296 11 H -0.281 1.281 12 C 0.158 3.842 13 C -0.111 4.111 14 C -0.129 4.129 15 C 0.113 3.887 16 N -0.597 5.597 17 C 0.576 3.424 18 O -0.541 6.541 19 C -0.227 4.227 20 C 0.015 3.985 21 C -0.239 4.239 22 C 0.514 3.486 23 O -0.549 6.549 24 N -0.490 5.490 25 C 0.048 3.952 26 C 0.171 3.829 27 C 0.106 3.894 28 C -0.120 4.120 29 H 0.017 0.983 30 H 0.016 0.984 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.004 0.996 34 H 0.251 0.749 35 H 0.043 0.957 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.140 0.860 43 H 0.155 0.845 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.168 0.832 48 H 0.067 0.933 49 H 0.077 0.923 50 H 0.053 0.947 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.005 8.945 8.999 15.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 N -0.317 5.317 4 C -0.379 4.379 5 H 0.092 0.908 6 C -0.193 4.193 7 N -0.528 5.528 8 Si 0.705 3.295 9 H -0.218 1.218 10 H -0.223 1.223 11 H -0.206 1.206 12 C 0.030 3.970 13 C -0.132 4.132 14 C -0.168 4.168 15 C -0.009 4.009 16 N -0.330 5.330 17 C 0.362 3.638 18 O -0.419 6.419 19 C -0.235 4.235 20 C -0.007 4.007 21 C -0.260 4.260 22 C 0.317 3.683 23 O -0.431 6.431 24 N -0.198 5.198 25 C -0.093 4.093 26 C 0.040 3.960 27 C -0.016 4.016 28 C -0.157 4.157 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.022 0.978 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.158 0.842 43 H 0.172 0.828 44 H 0.125 0.875 45 H 0.100 0.900 46 H 0.103 0.897 47 H 0.185 0.815 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.072 0.928 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.272 9.542 8.817 15.961 hybrid contribution 0.505 -0.079 -0.825 0.971 sum -8.767 9.464 7.992 15.175 Atomic orbital electron populations 1.22385 0.99415 0.98158 1.01239 1.20697 0.92405 0.84811 0.97968 1.44241 1.75679 1.10047 1.01732 1.19145 1.33286 1.01843 0.83591 0.90823 1.24579 0.97530 1.00348 0.96807 1.70224 1.23600 1.34041 1.24896 0.86661 0.82509 0.77802 0.82496 1.21784 1.22279 1.20641 1.20787 0.93904 0.93877 0.88403 1.21991 1.02067 0.97070 0.92086 1.21979 0.96443 0.99536 0.98838 1.21646 0.97477 0.91821 0.89923 1.48240 1.67750 1.07959 1.09007 1.17784 0.77248 0.81434 0.87339 1.90790 1.53178 1.74931 1.22957 1.19379 0.94817 1.04963 1.04378 1.21322 0.98950 0.89299 0.91159 1.22000 0.95789 1.05890 1.02355 1.17248 0.86720 0.80494 0.83881 1.90931 1.77818 1.43835 1.30527 1.45070 1.14631 1.31031 1.29098 1.22318 0.79635 1.05195 1.02150 1.21990 0.95771 0.91591 0.86689 1.22034 1.00099 0.98537 0.80936 1.22000 0.94186 0.97186 1.02374 0.96388 0.96486 0.89157 0.90366 0.97793 0.93839 0.93877 0.94516 0.91086 0.91954 0.91252 0.89486 0.91601 0.84209 0.82763 0.87528 0.90013 0.89666 0.81512 0.91429 0.90505 0.92813 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.60 37.16 0.36 -2.82 16 2 C 0.17 3.69 5.65 -4.04 -0.02 3.67 16 3 N -0.60 -13.16 2.41 -173.24 -0.42 -13.58 16 4 C -0.25 -6.12 7.54 -15.06 -0.11 -6.23 16 5 H 0.07 1.81 8.00 -52.49 -0.42 1.39 16 6 C 0.01 0.14 4.69 -17.43 -0.08 0.06 16 7 N -0.88 -23.02 9.10 55.49 0.51 -22.51 16 8 Si 0.88 20.51 29.66 -169.99 -5.04 15.47 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.30 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 C 0.16 2.86 5.21 -4.05 -0.02 2.84 16 13 C -0.11 -1.72 2.28 -90.58 -0.21 -1.92 16 14 C -0.13 -1.65 5.36 -26.61 -0.14 -1.79 16 15 C 0.11 1.37 6.44 -3.71 -0.02 1.35 16 16 N -0.60 -7.43 2.97 -173.76 -0.52 -7.94 16 17 C 0.58 7.49 7.10 -12.51 -0.09 7.41 16 18 O -0.54 -8.73 16.52 5.27 0.09 -8.64 16 19 C -0.23 -2.50 3.78 -104.95 -0.40 -2.90 16 20 C 0.01 0.16 9.86 -39.11 -0.39 -0.23 16 21 C -0.24 -2.71 9.97 -39.45 -0.39 -3.10 16 22 C 0.51 6.56 7.40 -15.41 -0.11 6.45 16 23 O -0.55 -8.70 16.33 4.95 0.08 -8.62 16 24 N -0.49 -4.80 2.95 -126.73 -0.37 -5.17 16 25 C 0.05 0.32 10.55 59.85 0.63 0.95 16 26 C 0.17 1.53 9.67 -16.43 -0.16 1.37 16 27 C 0.11 1.35 6.25 -3.48 -0.02 1.33 16 28 C -0.12 -1.89 4.97 -26.39 -0.13 -2.02 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.02 0.31 5.93 -51.93 -0.31 0.01 16 31 H 0.09 2.15 6.34 -51.93 -0.33 1.82 16 32 H 0.08 1.97 5.96 -51.93 -0.31 1.66 16 33 H 0.00 0.08 7.98 -51.93 -0.41 -0.34 16 34 H 0.25 6.51 8.31 -40.82 -0.34 6.17 16 35 H 0.04 0.79 8.03 -51.93 -0.42 0.38 16 36 H 0.04 0.63 7.95 -51.92 -0.41 0.22 16 37 H 0.07 1.19 5.76 -51.93 -0.30 0.89 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.09 6.99 -51.93 -0.36 0.72 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 43 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 44 H 0.11 0.87 6.83 -51.93 -0.35 0.52 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.17 1.01 8.05 -52.48 -0.42 0.59 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.08 0.92 6.16 -51.93 -0.32 0.60 16 50 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.11 2.13 6.26 -51.93 -0.32 1.81 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -30.62 397.39 -9.06 -39.68 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -8.06 Total: 0.92 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -1.31 Total: 4.40 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.80 Total: -49.20 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.17 Total: -17.26 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.04 Total: 15.47 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.62 -9.06 -39.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505397714.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.232 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds