Wall clock time and date at job start Wed Apr 1 2020 05:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46956 * 2 1 4 4 C 1.36941 * 119.99906 * 264.28358 * 3 2 1 5 5 H 1.07995 * 120.00122 * 188.63884 * 4 3 2 6 6 C 1.38814 * 119.99919 * 8.64392 * 4 3 2 7 7 N 1.31627 * 119.99736 * 24.59978 * 6 4 3 8 8 Si 1.86795 * 120.00198 * 204.60042 * 6 4 3 9 9 H 1.48507 * 109.47086 * 85.02189 * 8 6 4 10 10 H 1.48497 * 109.47281 * 205.02574 * 8 6 4 11 11 H 1.48506 * 109.47141 * 325.02966 * 8 6 4 12 12 C 1.46492 * 120.00006 * 84.29129 * 3 2 1 13 13 C 1.53005 * 109.47175 * 269.99403 * 12 3 2 14 14 C 1.52994 * 109.47597 * 179.97438 * 13 12 3 15 15 N 1.46496 * 109.47467 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00122 * 180.02562 * 15 14 13 17 17 O 1.21511 * 119.99971 * 0.02562 * 16 15 14 18 18 C 1.48164 * 120.00143 * 180.02562 * 16 15 14 19 19 C 1.39963 * 120.88826 * 359.97438 * 18 16 15 20 20 C 1.37984 * 119.13315 * 180.02562 * 19 18 16 21 21 N 1.31910 * 120.97545 * 359.71156 * 20 19 18 22 22 C 1.32172 * 121.96939 * 0.58130 * 21 20 19 23 23 O 1.35684 * 119.61992 * 179.70306 * 22 21 20 24 24 C 1.42901 * 117.00505 * 359.72483 * 23 22 21 25 25 C 1.53777 * 113.61376 * 247.49955 * 24 23 22 26 26 C 1.53785 * 87.08111 * 220.01413 * 25 24 23 27 27 C 1.53780 * 87.07855 * 25.43461 * 26 25 24 28 28 C 1.38896 * 120.75547 * 359.42503 * 22 21 20 29 29 H 1.09001 * 109.47217 * 300.00514 * 1 2 3 30 30 H 1.09002 * 109.46812 * 60.00273 * 1 2 3 31 31 H 1.09005 * 109.47539 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46785 * 239.99591 * 2 1 3 33 33 H 1.09002 * 109.46812 * 119.99727 * 2 1 3 34 34 H 0.97000 * 119.99227 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47432 * 149.99909 * 12 3 2 36 36 H 1.09001 * 109.47323 * 29.99294 * 12 3 2 37 37 H 1.09004 * 109.46970 * 59.99904 * 13 12 3 38 38 H 1.08995 * 109.47485 * 300.00505 * 13 12 3 39 39 H 1.09004 * 109.46937 * 60.00009 * 14 13 12 40 40 H 1.08995 * 109.47217 * 300.00794 * 14 13 12 41 41 H 0.97003 * 120.00109 * 0.02562 * 15 14 13 42 42 H 1.08002 * 120.43633 * 359.97438 * 19 18 16 43 43 H 1.07997 * 119.50995 * 180.02562 * 20 19 18 44 44 H 1.08998 * 112.84450 * 18.80034 * 24 23 22 45 45 H 1.09003 * 113.61746 * 334.56399 * 25 24 23 46 46 H 1.09000 * 113.61509 * 105.47139 * 25 24 23 47 47 H 1.08994 * 113.61425 * 270.88754 * 26 25 24 48 48 H 1.08997 * 113.61393 * 139.97851 * 26 25 24 49 49 H 1.09006 * 113.61371 * 220.01904 * 27 26 25 50 50 H 1.09001 * 113.69267 * 89.12656 * 27 26 25 51 51 H 1.08003 * 120.52673 * 180.25642 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3579 1.9874 -1.1801 5 1 2.8471 2.9502 -1.1714 6 6 2.0732 1.3644 -2.3874 7 7 1.0959 0.4857 -2.4602 8 14 3.0771 1.7729 -3.9088 9 1 4.3048 0.9376 -3.9308 10 1 2.2690 1.4974 -5.1238 11 1 3.4558 3.2086 -3.8812 12 6 2.1435 2.1139 1.2624 13 6 0.8338 2.8475 1.5583 14 6 0.9642 3.6122 2.8770 15 7 -0.2896 4.3151 3.1600 16 6 -0.4074 5.0596 4.2773 17 8 0.5264 5.1481 5.0496 18 6 -1.6757 5.7700 4.5638 19 6 -2.7629 5.6813 3.6869 20 6 -3.9266 6.3583 3.9891 21 7 -4.0270 7.0781 5.0899 22 6 -3.0247 7.1948 5.9436 23 8 -3.1782 7.9527 7.0585 24 6 -4.4421 8.5950 7.2375 25 6 -4.3749 10.1275 7.1301 26 6 -5.3678 10.1747 8.3035 27 6 -4.8286 8.7939 8.7126 28 6 -1.8181 6.5459 5.7152 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.8968 0.0506 -3.3040 35 1 2.9552 2.8371 1.1839 36 1 2.3578 1.4133 2.0694 37 1 0.0220 2.1243 1.6368 38 1 0.6193 3.5481 0.7513 39 1 1.7761 4.3353 2.7989 40 1 1.1784 2.9113 3.6838 41 1 -1.0350 4.2447 2.5433 42 1 -2.6916 5.0914 2.7850 43 1 -4.7694 6.2938 3.3169 44 1 -5.2330 8.1480 6.6353 45 1 -3.3948 10.5396 7.3706 46 1 -4.7822 10.5182 6.1976 47 1 -6.4123 10.1609 7.9924 48 1 -5.1511 10.9601 9.0276 49 1 -5.6022 8.1078 9.0576 50 1 -3.9727 8.8398 9.3859 51 1 -1.0029 6.6405 6.4174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660610152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:46 Heat of formation + Delta-G solvation = 11.143521 kcal Electronic energy + Delta-G solvation = -29285.925944 eV Core-core repulsion = 25187.562384 eV Total energy + Delta-G solvation = -4098.363561 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.19801 -39.93252 -38.93415 -36.75058 -36.60326 -35.05985 -33.10090 -32.02893 -30.82959 -30.28109 -28.90319 -26.33748 -26.14308 -25.52656 -24.19398 -23.63176 -23.09235 -21.18568 -20.99341 -20.15736 -19.99723 -18.93831 -17.66492 -16.91904 -16.63174 -16.15508 -15.96830 -15.78382 -15.52370 -15.41444 -15.10875 -14.86110 -14.39630 -14.29395 -13.88031 -13.55243 -13.40323 -13.10461 -12.92961 -12.84348 -12.70252 -12.26838 -11.95005 -11.88531 -11.75540 -11.71392 -11.44468 -11.32789 -10.94204 -10.90210 -10.73351 -10.71426 -10.48663 -10.37002 -10.30098 -10.22876 -9.89455 -9.79186 -9.59497 -9.36047 -9.06129 -8.85200 -8.37100 -6.91160 -5.78281 -3.09231 0.40808 0.80401 2.56540 2.71315 3.11128 3.38556 3.46272 3.47111 3.53070 3.89700 4.09252 4.10818 4.33462 4.37826 4.45220 4.49173 4.62340 4.67963 4.76731 5.09956 5.21683 5.22941 5.27865 5.32635 5.35024 5.40437 5.44484 5.45116 5.47750 5.62044 5.71131 5.72702 5.80255 5.84251 6.05468 6.06541 6.12529 6.37860 6.47304 6.58455 6.72473 6.84374 6.91503 6.93141 7.09049 7.15905 7.39378 7.44679 7.65819 7.76282 8.04447 8.07831 8.35481 9.23306 9.86424 10.31239 11.25602 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.001594 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.226598 B =17557.283002 C =17767.435415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.166 3.834 3 N -0.597 5.597 4 C -0.249 4.249 5 H 0.073 0.927 6 C -0.003 4.003 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.156 3.844 13 C -0.156 4.156 14 C 0.118 3.882 15 N -0.713 5.713 16 C 0.554 3.446 17 O -0.530 6.530 18 C -0.048 4.048 19 C -0.182 4.182 20 C 0.140 3.860 21 N -0.530 5.530 22 C 0.321 3.679 23 O -0.291 6.291 24 C 0.060 3.940 25 C -0.152 4.152 26 C -0.139 4.139 27 C -0.137 4.137 28 C -0.135 4.135 29 H 0.013 0.987 30 H 0.090 0.910 31 H 0.018 0.982 32 H 0.087 0.913 33 H 0.002 0.998 34 H 0.251 0.749 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.402 0.598 42 H 0.144 0.856 43 H 0.167 0.833 44 H 0.118 0.882 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.092 0.908 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.154 14.401 18.132 27.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 N -0.318 5.318 4 C -0.378 4.378 5 H 0.091 0.909 6 C -0.201 4.201 7 N -0.543 5.543 8 Si 0.727 3.273 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.028 3.972 13 C -0.197 4.197 14 C -0.005 4.005 15 N -0.365 5.365 16 C 0.339 3.661 17 O -0.408 6.408 18 C -0.059 4.059 19 C -0.203 4.203 20 C -0.015 4.015 21 N -0.254 5.254 22 C 0.142 3.858 23 O -0.198 6.198 24 C 0.003 3.997 25 C -0.190 4.190 26 C -0.176 4.176 27 C -0.175 4.175 28 C -0.157 4.157 29 H 0.031 0.969 30 H 0.108 0.892 31 H 0.037 0.963 32 H 0.105 0.895 33 H 0.020 0.980 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.237 0.763 42 H 0.162 0.838 43 H 0.184 0.816 44 H 0.135 0.865 45 H 0.108 0.892 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.111 0.889 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.065 14.829 18.916 27.848 hybrid contribution 0.471 -0.224 -1.500 1.589 sum -13.593 14.605 17.416 26.484 Atomic orbital electron populations 1.22416 0.99394 0.98158 1.00974 1.20805 0.92447 0.84508 0.98189 1.44251 1.75733 1.10210 1.01573 1.19290 1.31253 1.03629 0.83590 0.90878 1.24716 0.97979 1.00050 0.97305 1.70154 1.27315 1.31979 1.24860 0.86386 0.80365 0.77829 0.82767 1.21630 1.22013 1.20813 1.20666 0.93560 0.94188 0.88797 1.22749 1.03086 0.99746 0.94083 1.21609 0.84739 0.95458 0.98688 1.46081 1.17924 1.49155 1.23296 1.18096 0.86755 0.79401 0.81876 1.90786 1.39851 1.62602 1.47518 1.20213 0.94503 0.96651 0.94545 1.22216 0.93945 1.02928 1.01237 1.22383 0.96953 0.90392 0.91817 1.67086 1.31282 1.21615 1.05431 1.19653 0.89707 0.89784 0.86697 1.86366 1.36885 1.59613 1.36958 1.24219 0.85156 0.92251 0.98024 1.23454 1.00634 0.95471 0.99445 1.22628 0.99202 0.97377 0.98428 1.23277 1.01363 0.97374 0.95447 1.21137 0.97384 0.98339 0.98840 0.96850 0.89157 0.96325 0.89497 0.97960 0.93852 0.93480 0.94157 0.91504 0.91341 0.91433 0.91548 0.76278 0.83814 0.81572 0.86455 0.89165 0.90759 0.89640 0.90372 0.90566 0.88949 0.82852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.58 37.16 0.36 -2.95 16 2 C 0.17 3.87 5.64 -4.04 -0.02 3.84 16 3 N -0.60 -14.06 2.54 -173.24 -0.44 -14.50 16 4 C -0.25 -6.47 9.70 -15.06 -0.15 -6.62 16 5 H 0.07 1.88 7.93 -52.49 -0.42 1.46 16 6 C 0.00 -0.09 4.91 -17.43 -0.09 -0.18 16 7 N -0.90 -24.31 8.54 55.49 0.47 -23.84 16 8 Si 0.90 21.12 29.62 -169.99 -5.03 16.09 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.16 2.98 5.71 -4.04 -0.02 2.96 16 13 C -0.16 -2.55 5.53 -26.73 -0.15 -2.70 16 14 C 0.12 1.68 5.67 -4.05 -0.02 1.66 16 15 N -0.71 -8.95 5.51 -61.15 -0.34 -9.29 16 16 C 0.55 7.62 7.80 -12.18 -0.10 7.52 16 17 O -0.53 -9.08 16.44 5.36 0.09 -8.99 16 18 C -0.05 -0.56 5.91 -104.68 -0.62 -1.18 16 19 C -0.18 -1.63 9.61 -39.03 -0.38 -2.01 16 20 C 0.14 1.19 11.17 -17.61 -0.20 0.99 16 21 N -0.53 -5.50 8.56 -13.38 -0.11 -5.62 16 22 C 0.32 3.63 7.49 -17.16 -0.13 3.51 16 23 O -0.29 -3.15 10.12 -18.75 -0.19 -3.34 16 24 C 0.06 0.50 4.18 -25.92 -0.11 0.39 16 25 C -0.15 -1.05 7.91 -25.92 -0.21 -1.26 16 26 C -0.14 -0.73 8.08 -25.92 -0.21 -0.94 16 27 C -0.14 -0.87 7.91 -25.92 -0.21 -1.08 16 28 C -0.14 -1.60 9.61 -38.84 -0.37 -1.98 16 29 H 0.01 0.26 5.98 -51.93 -0.31 -0.05 16 30 H 0.09 2.26 6.28 -51.93 -0.33 1.94 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 2.28 5.87 -51.93 -0.31 1.97 16 33 H 0.00 0.05 7.97 -51.93 -0.41 -0.37 16 34 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 35 H 0.05 0.88 8.03 -51.93 -0.42 0.47 16 36 H 0.04 0.72 7.95 -51.93 -0.41 0.30 16 37 H 0.07 1.13 5.93 -51.93 -0.31 0.82 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.40 4.14 6.61 -40.82 -0.27 3.87 16 42 H 0.14 0.96 6.53 -52.49 -0.34 0.62 16 43 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.12 1.00 6.87 -51.93 -0.36 0.64 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 51 H 0.15 1.84 7.74 -52.48 -0.41 1.43 16 LS Contribution 410.55 15.07 6.19 6.19 Total: -1.00 -30.44 410.55 -10.04 -40.48 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -8.07 Total: 2.82 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -2.61 Total: -0.01 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.42 Total: -53.25 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.10 Total: -12.33 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -30.44 -10.04 -40.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660610152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.628 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds