Wall clock time and date at job start Wed Apr 1 2020 05:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46956 * 2 1 4 4 C 1.36941 * 119.99906 * 264.28358 * 3 2 1 5 5 H 1.07995 * 120.00122 * 188.63884 * 4 3 2 6 6 C 1.38814 * 119.99919 * 8.64392 * 4 3 2 7 7 N 1.31627 * 119.99736 * 24.59978 * 6 4 3 8 8 Si 1.86795 * 120.00198 * 204.60042 * 6 4 3 9 9 H 1.48507 * 109.47086 * 85.02189 * 8 6 4 10 10 H 1.48497 * 109.47281 * 205.02574 * 8 6 4 11 11 H 1.48506 * 109.47141 * 325.02966 * 8 6 4 12 12 C 1.46492 * 120.00006 * 84.29129 * 3 2 1 13 13 C 1.53005 * 109.47175 * 269.99403 * 12 3 2 14 14 C 1.52994 * 109.47597 * 179.97438 * 13 12 3 15 15 N 1.46496 * 109.47467 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00122 * 180.02562 * 15 14 13 17 17 O 1.21511 * 119.99971 * 0.02562 * 16 15 14 18 18 C 1.48164 * 120.00143 * 180.02562 * 16 15 14 19 19 C 1.39963 * 120.88826 * 359.97438 * 18 16 15 20 20 C 1.37984 * 119.13315 * 180.02562 * 19 18 16 21 21 N 1.31910 * 120.97545 * 359.71156 * 20 19 18 22 22 C 1.32172 * 121.96939 * 0.58130 * 21 20 19 23 23 O 1.35684 * 119.61992 * 179.70306 * 22 21 20 24 24 C 1.42901 * 117.00505 * 359.72483 * 23 22 21 25 25 C 1.53777 * 113.61376 * 247.49955 * 24 23 22 26 26 C 1.53785 * 87.08111 * 220.01413 * 25 24 23 27 27 C 1.53780 * 87.07855 * 25.43461 * 26 25 24 28 28 C 1.38896 * 120.75547 * 359.42503 * 22 21 20 29 29 H 1.09001 * 109.47217 * 300.00514 * 1 2 3 30 30 H 1.09002 * 109.46812 * 60.00273 * 1 2 3 31 31 H 1.09005 * 109.47539 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46785 * 239.99591 * 2 1 3 33 33 H 1.09002 * 109.46812 * 119.99727 * 2 1 3 34 34 H 0.97000 * 119.99227 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47432 * 149.99909 * 12 3 2 36 36 H 1.09001 * 109.47323 * 29.99294 * 12 3 2 37 37 H 1.09004 * 109.46970 * 59.99904 * 13 12 3 38 38 H 1.08995 * 109.47485 * 300.00505 * 13 12 3 39 39 H 1.09004 * 109.46937 * 60.00009 * 14 13 12 40 40 H 1.08995 * 109.47217 * 300.00794 * 14 13 12 41 41 H 0.97003 * 120.00109 * 0.02562 * 15 14 13 42 42 H 1.08002 * 120.43633 * 359.97438 * 19 18 16 43 43 H 1.07997 * 119.50995 * 180.02562 * 20 19 18 44 44 H 1.08998 * 112.84450 * 18.80034 * 24 23 22 45 45 H 1.09003 * 113.61746 * 334.56399 * 25 24 23 46 46 H 1.09000 * 113.61509 * 105.47139 * 25 24 23 47 47 H 1.08994 * 113.61425 * 270.88754 * 26 25 24 48 48 H 1.08997 * 113.61393 * 139.97851 * 26 25 24 49 49 H 1.09006 * 113.61371 * 220.01904 * 27 26 25 50 50 H 1.09001 * 113.69267 * 89.12656 * 27 26 25 51 51 H 1.08003 * 120.52673 * 180.25642 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3579 1.9874 -1.1801 5 1 2.8471 2.9502 -1.1714 6 6 2.0732 1.3644 -2.3874 7 7 1.0959 0.4857 -2.4602 8 14 3.0771 1.7729 -3.9088 9 1 4.3048 0.9376 -3.9308 10 1 2.2690 1.4974 -5.1238 11 1 3.4558 3.2086 -3.8812 12 6 2.1435 2.1139 1.2624 13 6 0.8338 2.8475 1.5583 14 6 0.9642 3.6122 2.8770 15 7 -0.2896 4.3151 3.1600 16 6 -0.4074 5.0596 4.2773 17 8 0.5264 5.1481 5.0496 18 6 -1.6757 5.7700 4.5638 19 6 -2.7629 5.6813 3.6869 20 6 -3.9266 6.3583 3.9891 21 7 -4.0270 7.0781 5.0899 22 6 -3.0247 7.1948 5.9436 23 8 -3.1782 7.9527 7.0585 24 6 -4.4421 8.5950 7.2375 25 6 -4.3749 10.1275 7.1301 26 6 -5.3678 10.1747 8.3035 27 6 -4.8286 8.7939 8.7126 28 6 -1.8181 6.5459 5.7152 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.8968 0.0506 -3.3040 35 1 2.9552 2.8371 1.1839 36 1 2.3578 1.4133 2.0694 37 1 0.0220 2.1243 1.6368 38 1 0.6193 3.5481 0.7513 39 1 1.7761 4.3353 2.7989 40 1 1.1784 2.9113 3.6838 41 1 -1.0350 4.2447 2.5433 42 1 -2.6916 5.0914 2.7850 43 1 -4.7694 6.2938 3.3169 44 1 -5.2330 8.1480 6.6353 45 1 -3.3948 10.5396 7.3706 46 1 -4.7822 10.5182 6.1976 47 1 -6.4123 10.1609 7.9924 48 1 -5.1511 10.9601 9.0276 49 1 -5.6022 8.1078 9.0576 50 1 -3.9727 8.8398 9.3859 51 1 -1.0029 6.6405 6.4174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660610152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:45 Heat of formation + Delta-G solvation = -6.824891 kcal Electronic energy + Delta-G solvation = -29286.705113 eV Core-core repulsion = 25187.562384 eV Total energy + Delta-G solvation = -4099.142729 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.00466 -40.84339 -39.72657 -38.27595 -37.40530 -36.39854 -34.15136 -33.50538 -32.14283 -31.46166 -30.57045 -27.44911 -26.66944 -26.54946 -25.51649 -24.43352 -24.40060 -22.62857 -22.16591 -21.64649 -20.59455 -19.86487 -18.68715 -18.47193 -17.61087 -17.06628 -16.89384 -16.84414 -16.62707 -16.49965 -16.06466 -15.78950 -15.74040 -15.44642 -15.07601 -14.88265 -14.73288 -14.33150 -14.15215 -13.67213 -13.47941 -13.44676 -13.30245 -13.14676 -13.05079 -12.85870 -12.60069 -12.53867 -12.48042 -12.25505 -12.13600 -12.09386 -11.66154 -11.55622 -11.34481 -11.33684 -11.27310 -11.14313 -11.10163 -10.72106 -10.30939 -10.19027 -9.60163 -8.79595 -7.76914 -5.07630 -0.46172 0.04352 1.49853 1.54445 1.59252 1.71814 1.73978 2.17625 2.57673 2.70478 3.19808 3.32360 3.44191 3.56971 3.58507 3.66599 3.84114 3.86956 3.88022 3.95822 4.04517 4.13730 4.28546 4.48166 4.52788 4.59923 4.67125 4.67798 4.75496 4.77162 4.80083 4.83288 4.91877 4.95056 4.96463 5.01545 5.08102 5.09665 5.18918 5.23232 5.27833 5.34896 5.36259 5.44821 5.57468 5.67123 5.85922 6.20698 6.22209 6.37205 6.41267 6.68284 7.00224 7.26768 7.98802 8.38446 9.24788 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.001594 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.226598 B =17557.283002 C =17767.435415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 N -0.611 5.611 4 C -0.254 4.254 5 H 0.071 0.929 6 C -0.049 4.049 7 N -0.914 5.914 8 Si 0.950 3.050 9 H -0.293 1.293 10 H -0.299 1.299 11 H -0.277 1.277 12 C 0.150 3.850 13 C -0.134 4.134 14 C 0.130 3.870 15 N -0.703 5.703 16 C 0.555 3.445 17 O -0.570 6.570 18 C -0.059 4.059 19 C -0.172 4.172 20 C 0.145 3.855 21 N -0.534 5.534 22 C 0.311 3.689 23 O -0.306 6.306 24 C 0.046 3.954 25 C -0.154 4.154 26 C -0.127 4.127 27 C -0.136 4.136 28 C -0.153 4.153 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.029 0.971 32 H 0.054 0.946 33 H 0.021 0.979 34 H 0.245 0.755 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.415 0.585 42 H 0.171 0.829 43 H 0.206 0.794 44 H 0.115 0.885 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.098 0.902 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.088 0.912 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.769 15.089 18.471 28.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.040 3.960 3 N -0.333 5.333 4 C -0.384 4.384 5 H 0.089 0.911 6 C -0.244 4.244 7 N -0.562 5.562 8 Si 0.780 3.220 9 H -0.221 1.221 10 H -0.226 1.226 11 H -0.202 1.202 12 C 0.023 3.977 13 C -0.174 4.174 14 C 0.006 3.994 15 N -0.355 5.355 16 C 0.342 3.658 17 O -0.450 6.450 18 C -0.070 4.070 19 C -0.192 4.192 20 C -0.011 4.011 21 N -0.258 5.258 22 C 0.133 3.867 23 O -0.214 6.214 24 C -0.010 4.010 25 C -0.192 4.192 26 C -0.164 4.164 27 C -0.173 4.173 28 C -0.175 4.175 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.253 0.747 42 H 0.188 0.812 43 H 0.222 0.778 44 H 0.133 0.867 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.116 0.884 48 H 0.107 0.893 49 H 0.103 0.897 50 H 0.107 0.893 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.696 15.538 19.271 29.311 hybrid contribution 0.959 -0.430 -1.571 1.890 sum -14.737 15.107 17.700 27.545 Atomic orbital electron populations 1.22190 0.98361 0.98657 1.00289 1.20706 0.93282 0.84515 0.97455 1.44384 1.76070 1.10597 1.02245 1.19496 1.30706 1.03509 0.84695 0.91083 1.25287 0.98912 1.00786 0.99436 1.70301 1.28153 1.32930 1.24775 0.85535 0.78733 0.77651 0.80052 1.22100 1.22612 1.20205 1.20828 0.94868 0.94550 0.87442 1.22375 1.01276 0.99185 0.94608 1.21346 0.85369 0.95273 0.97433 1.45901 1.17796 1.48524 1.23264 1.18380 0.87045 0.78997 0.81377 1.90764 1.41405 1.64034 1.48840 1.20069 0.94350 0.97204 0.95372 1.22508 0.92984 1.02457 1.01265 1.23065 0.97794 0.88827 0.91380 1.67186 1.30857 1.21924 1.05869 1.19692 0.89753 0.90080 0.87182 1.86350 1.38281 1.59764 1.36959 1.24520 0.84233 0.92832 0.99398 1.23464 1.00927 0.94393 1.00384 1.22627 0.99355 0.96823 0.97594 1.23301 1.01497 0.98385 0.94138 1.21094 0.97599 0.99533 0.99257 0.94901 0.92259 0.95236 0.92769 0.96047 0.94572 0.93419 0.92564 0.91584 0.92682 0.91886 0.91347 0.74745 0.81157 0.77788 0.86682 0.89843 0.90589 0.88359 0.89267 0.89678 0.89345 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.80 9.58 71.98 0.69 -5.11 16 2 C 0.17 7.60 5.64 86.38 0.49 8.09 16 3 N -0.61 -28.28 2.54 -702.01 -1.78 -30.06 16 4 C -0.25 -13.14 9.70 84.03 0.82 -12.33 16 5 H 0.07 3.62 7.93 -2.91 -0.02 3.60 16 6 C -0.05 -2.60 4.91 84.86 0.42 -2.19 16 7 N -0.91 -49.95 8.54 21.65 0.18 -49.77 16 8 Si 0.95 43.62 29.62 68.60 2.03 45.65 16 9 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 10 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 C 0.15 5.49 5.71 86.38 0.49 5.98 16 13 C -0.13 -4.15 5.53 30.59 0.17 -3.98 16 14 C 0.13 3.47 5.67 86.38 0.49 3.96 16 15 N -0.70 -16.44 5.51 -465.69 -2.57 -19.00 16 16 C 0.56 14.90 7.80 86.88 0.68 15.58 16 17 O -0.57 -19.71 16.44 -3.75 -0.06 -19.77 16 18 C -0.06 -1.32 5.91 -19.90 -0.12 -1.44 16 19 C -0.17 -2.64 9.61 22.63 0.22 -2.42 16 20 C 0.14 2.05 11.17 84.62 0.94 2.99 16 21 N -0.53 -10.29 8.56 -309.14 -2.65 -12.93 16 22 C 0.31 7.01 7.49 84.80 0.63 7.65 16 23 O -0.31 -6.72 10.12 -90.02 -0.91 -7.63 16 24 C 0.05 0.74 4.18 31.12 0.13 0.87 16 25 C -0.15 -2.01 7.91 31.12 0.25 -1.76 16 26 C -0.13 -1.11 8.08 31.12 0.25 -0.86 16 27 C -0.14 -1.60 7.91 31.12 0.25 -1.35 16 28 C -0.15 -3.69 9.61 22.75 0.22 -3.47 16 29 H 0.03 1.24 5.98 -2.39 -0.01 1.22 16 30 H 0.06 2.94 6.28 -2.39 -0.01 2.92 16 31 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.05 2.85 5.87 -2.39 -0.01 2.84 16 33 H 0.02 0.89 7.97 -2.39 -0.02 0.87 16 34 H 0.24 13.22 8.31 -92.71 -0.77 12.45 16 35 H 0.05 1.73 8.03 -2.39 -0.02 1.71 16 36 H 0.06 1.88 7.95 -2.39 -0.02 1.86 16 37 H 0.07 2.07 5.93 -2.38 -0.01 2.06 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.41 7.47 6.61 -92.71 -0.61 6.85 16 42 H 0.17 1.63 6.53 -2.91 -0.02 1.61 16 43 H 0.21 1.26 8.06 -2.91 -0.02 1.24 16 44 H 0.12 1.87 6.87 -2.39 -0.02 1.85 16 45 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 50 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.14 3.63 7.74 -2.91 -0.02 3.61 16 Total: -1.00 -66.08 410.55 1.59 -64.49 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.32 Total: 18.81 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 7.01 Total: 10.21 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -6.81 Total: -111.77 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.97 Total: -27.40 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -66.08 1.59 -64.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660610152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.666 kcal (2) G-P(sol) polarization free energy of solvation -66.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds