Wall clock time and date at job start Wed Apr 1 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46891 * 109.46905 * 2 1 4 4 C 1.46899 * 111.00581 * 76.02960 * 3 2 1 5 5 C 1.52996 * 109.47412 * 199.54394 * 4 3 2 6 6 N 1.46498 * 109.47015 * 174.88340 * 5 4 3 7 7 C 1.34782 * 119.99952 * 180.02562 * 6 5 4 8 8 O 1.21553 * 119.99745 * 359.97438 * 7 6 5 9 9 C 1.47846 * 120.00028 * 179.97438 * 7 6 5 10 10 C 1.39597 * 120.14507 * 359.97438 * 9 7 6 11 11 C 1.37933 * 119.85487 * 180.25171 * 10 9 7 12 12 C 1.38386 * 120.14353 * 359.44801 * 11 10 9 13 13 C 1.50698 * 119.85406 * 180.25856 * 12 11 10 14 14 C 1.38339 * 120.28979 * 0.55083 * 12 11 10 15 15 C 1.50699 * 119.92675 * 179.69930 * 14 12 11 16 16 C 1.37983 * 120.14533 * 359.72787 * 14 12 11 17 17 C 1.46906 * 110.99688 * 199.98287 * 3 2 1 18 18 C 1.50689 * 109.47472 * 66.04699 * 17 3 2 19 19 O 1.21300 * 120.00232 * 359.97438 * 18 17 3 20 20 N 1.34774 * 120.00280 * 180.02562 * 18 17 3 21 21 C 1.37104 * 120.00260 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99677 * 0.02562 * 21 20 18 23 23 C 1.38943 * 120.00046 * 179.97438 * 21 20 18 24 24 N 1.31418 * 120.00441 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00151 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47039 * 90.00055 * 25 23 21 27 27 H 1.48500 * 109.47164 * 210.00199 * 25 23 21 28 28 H 1.48502 * 109.46896 * 330.00219 * 25 23 21 29 29 H 1.08995 * 109.46808 * 174.87444 * 1 2 3 30 30 H 1.08993 * 109.47135 * 294.87344 * 1 2 3 31 31 H 1.09000 * 109.47011 * 54.87435 * 1 2 3 32 32 H 1.09002 * 109.47102 * 239.99825 * 2 1 3 33 33 H 1.08998 * 109.46736 * 119.99939 * 2 1 3 34 34 H 1.08992 * 109.47185 * 79.53984 * 4 3 2 35 35 H 1.09000 * 109.46611 * 319.54535 * 4 3 2 36 36 H 1.09002 * 109.47287 * 54.88614 * 5 4 3 37 37 H 1.08999 * 109.47475 * 294.88336 * 5 4 3 38 38 H 0.97005 * 120.00213 * 0.02562 * 6 5 4 39 39 H 1.08007 * 120.07075 * 359.97438 * 10 9 7 40 40 H 1.07998 * 119.93016 * 179.72273 * 11 10 9 41 41 H 1.09002 * 109.47000 * 270.29638 * 13 12 11 42 42 H 1.09001 * 109.47157 * 30.29341 * 13 12 11 43 43 H 1.09000 * 109.47175 * 150.30079 * 13 12 11 44 44 H 1.08995 * 109.47395 * 270.02948 * 15 14 12 45 45 H 1.09005 * 109.47025 * 30.02614 * 15 14 12 46 46 H 1.09000 * 109.47267 * 150.02138 * 15 14 12 47 47 H 1.08002 * 120.07064 * 179.97438 * 16 14 12 48 48 H 1.09006 * 109.46971 * 186.04643 * 17 3 2 49 49 H 1.09003 * 109.47145 * 306.03978 * 17 3 2 50 50 H 0.96996 * 119.99800 * 359.97438 * 20 18 17 51 51 H 0.96996 * 120.00290 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8830 1.9917 1.3308 5 6 1.9280 3.5157 1.2035 6 7 1.6699 4.1228 2.5116 7 6 1.6597 5.4643 2.6418 8 8 1.8651 6.1703 1.6739 9 6 1.3987 6.0769 3.9618 10 6 1.1619 5.2689 5.0752 11 6 0.9139 5.8469 6.3028 12 6 0.9109 7.2245 6.4344 13 6 0.6449 7.8490 7.7798 14 6 1.1449 8.0309 5.3350 15 6 1.1329 9.5303 5.4862 16 6 1.3886 7.4655 4.1001 17 6 3.4104 1.4516 -0.4687 18 6 3.4713 1.0499 -1.9198 19 8 2.4561 0.7381 -2.5059 20 7 4.6538 1.0359 -2.5661 21 6 4.7093 0.6699 -3.8862 22 1 3.8053 0.3931 -4.4083 23 6 5.9284 0.6561 -4.5527 24 7 7.0284 0.9933 -3.9176 25 14 6.0041 0.1567 -6.3511 26 1 5.8324 1.3586 -7.2063 27 1 7.3201 -0.4696 -6.6360 28 1 4.9200 -0.8159 -6.6408 29 1 -0.3633 -1.0235 -0.0918 30 1 -0.3633 0.4322 0.9323 31 1 -0.3633 0.5913 -0.8405 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.7005 1.6562 1.9688 35 1 0.9320 1.6917 1.7709 36 1 1.1678 3.8437 0.4945 37 1 2.9120 3.8219 0.8487 38 1 1.5063 3.5593 3.2841 39 1 1.1684 4.1935 4.9747 40 1 0.7261 5.2230 7.1641 41 1 -0.4262 8.0122 7.8993 42 1 1.0009 7.1832 8.5661 43 1 1.1676 8.8031 7.8472 44 1 0.1231 9.9044 5.3182 45 1 1.4562 9.7965 6.4926 46 1 1.8110 9.9744 4.7575 47 1 1.5707 8.0963 3.2426 48 1 3.7827 2.4701 -0.3577 49 1 4.0259 0.7734 0.1223 50 1 5.4657 1.2849 -2.0973 51 1 7.8794 0.9840 -4.3830 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663452165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:16 Heat of formation + Delta-G solvation = -49.183177 kcal Electronic energy + Delta-G solvation = -29365.638780 eV Core-core repulsion = 25264.659257 eV Total energy + Delta-G solvation = -4100.979523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.54383 -39.12370 -38.63595 -36.87139 -34.87569 -33.89535 -33.71044 -32.51185 -31.33866 -30.83466 -29.39397 -28.14272 -27.09936 -26.01109 -24.23820 -23.21688 -22.29456 -22.14083 -21.00997 -20.01087 -19.14167 -17.91115 -17.81593 -16.67955 -16.18803 -15.72299 -15.63655 -15.48678 -15.11652 -14.95363 -14.66331 -14.61238 -14.34152 -13.98762 -13.86518 -13.74785 -13.68556 -13.33805 -13.23002 -13.06325 -12.98754 -12.43699 -12.38948 -12.16714 -12.07240 -11.74867 -11.67154 -11.56970 -11.46188 -11.42114 -11.34557 -11.09615 -10.77863 -10.51876 -10.37018 -10.19054 -10.07543 -9.43848 -9.25978 -9.16303 -8.93055 -8.41321 -7.97000 -7.89447 -6.38707 -3.79433 0.51971 0.98232 2.63302 2.90688 3.20312 3.28734 3.34362 3.54074 3.92667 4.03808 4.25874 4.32142 4.33329 4.45869 4.62669 4.70705 4.81335 4.85613 5.00625 5.06289 5.08521 5.15622 5.24583 5.27485 5.31749 5.36153 5.36832 5.42761 5.43556 5.59182 5.65697 5.74319 5.79897 5.83657 5.87972 5.90731 5.93501 5.98397 6.02250 6.12590 6.19931 6.27074 6.31717 6.46645 6.53836 6.57067 7.26765 7.29516 7.38768 7.58100 8.07085 8.09265 8.64679 9.21069 9.57537 10.09178 10.79057 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016356 B = 0.001764 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.492313 B =15872.548115 C =17018.217926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.053 3.947 3 N -0.511 5.511 4 C 0.044 3.956 5 C 0.121 3.879 6 N -0.724 5.724 7 C 0.556 3.444 8 O -0.532 6.532 9 C -0.133 4.133 10 C -0.089 4.089 11 C -0.125 4.125 12 C -0.065 4.065 13 C -0.122 4.122 14 C -0.096 4.096 15 C -0.118 4.118 16 C -0.056 4.056 17 C 0.042 3.958 18 C 0.444 3.556 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.022 0.978 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.397 0.603 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.137 0.863 48 H 0.089 0.911 49 H 0.048 0.952 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.033 10.155 26.421 30.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 N -0.236 5.236 4 C -0.085 4.085 5 C -0.003 4.003 6 N -0.377 5.377 7 C 0.343 3.657 8 O -0.409 6.409 9 C -0.136 4.136 10 C -0.107 4.107 11 C -0.143 4.143 12 C -0.065 4.065 13 C -0.178 4.178 14 C -0.096 4.096 15 C -0.174 4.174 16 C -0.075 4.075 17 C -0.089 4.089 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.195 1.195 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.232 0.768 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.154 0.846 48 H 0.107 0.893 49 H 0.066 0.934 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.651 10.692 24.883 29.483 hybrid contribution 1.162 -0.921 0.325 1.518 sum -10.489 9.771 25.209 28.999 Atomic orbital electron populations 1.21692 0.95263 1.01087 1.01590 1.22167 0.96012 0.87879 1.01381 1.61440 1.20051 1.19565 1.22559 1.22251 1.01464 0.93598 0.91161 1.21389 1.02850 0.92211 0.83812 1.45843 1.73006 1.06495 1.12327 1.18245 0.77070 0.82095 0.88277 1.90811 1.48649 1.61573 1.39863 1.19936 1.05906 0.94484 0.93309 1.21263 0.97786 0.99432 0.92261 1.20951 1.01579 0.94255 0.97506 1.19989 0.97537 0.93494 0.95500 1.20932 1.02366 1.01282 0.93205 1.19756 1.00854 0.96371 0.92626 1.20880 1.02733 0.90844 1.02990 1.21175 0.95403 0.93610 0.97300 1.21951 0.88920 1.01961 0.96096 1.19696 0.84569 0.84927 0.87911 1.90510 1.34072 1.53182 1.68200 1.41871 1.07442 1.59431 1.11376 1.19694 0.95122 1.41880 0.86055 0.87901 1.25258 0.94809 0.97526 1.00379 1.69614 0.98717 1.48507 1.37501 0.85861 0.77516 0.78820 0.82097 1.20402 1.20988 1.19452 0.92846 0.93935 0.91365 0.88428 0.95942 0.94303 0.90219 0.89979 0.91057 0.76823 0.85645 0.85410 0.90750 0.91328 0.90830 0.90895 0.90981 0.91212 0.84551 0.89273 0.93386 0.77524 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.96 37.16 0.37 -1.53 16 2 C 0.05 0.83 5.18 -3.82 -0.02 0.81 16 3 N -0.51 -8.28 4.10 -236.08 -0.97 -9.25 16 4 C 0.04 0.53 4.92 -3.83 -0.02 0.51 16 5 C 0.12 1.57 5.70 -4.04 -0.02 1.55 16 6 N -0.72 -7.80 5.51 -61.25 -0.34 -8.14 16 7 C 0.56 7.26 7.77 -12.33 -0.10 7.17 16 8 O -0.53 -9.17 16.35 5.32 0.09 -9.08 16 9 C -0.13 -1.41 5.87 -104.97 -0.62 -2.02 16 10 C -0.09 -0.69 9.54 -39.19 -0.37 -1.07 16 11 C -0.12 -0.86 9.68 -39.64 -0.38 -1.24 16 12 C -0.06 -0.46 5.89 -104.53 -0.62 -1.08 16 13 C -0.12 -0.54 9.59 36.00 0.35 -0.19 16 14 C -0.10 -0.78 5.87 -104.68 -0.61 -1.40 16 15 C -0.12 -0.68 9.60 36.01 0.35 -0.33 16 16 C -0.06 -0.57 9.24 -39.19 -0.36 -0.94 16 17 C 0.04 0.75 5.27 -4.98 -0.03 0.72 16 18 C 0.44 10.49 7.29 -10.99 -0.08 10.40 16 19 O -0.58 -15.40 14.12 5.54 0.08 -15.32 16 20 N -0.56 -14.42 5.29 -10.97 -0.06 -14.48 16 21 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 25 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.49 6.91 -51.93 -0.36 0.13 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.10 1.89 5.85 -51.93 -0.30 1.59 16 33 H 0.02 0.31 7.99 -51.93 -0.42 -0.11 16 34 H 0.04 0.42 8.00 -51.93 -0.42 0.00 16 35 H 0.08 0.83 6.58 -51.93 -0.34 0.49 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.04 6.95 -51.93 -0.36 0.68 16 38 H 0.40 2.96 6.51 -40.82 -0.27 2.70 16 39 H 0.13 0.67 6.41 -52.48 -0.34 0.33 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 43 H 0.07 0.27 5.93 -51.93 -0.31 -0.04 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.31 5.93 -51.93 -0.31 0.00 16 46 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 47 H 0.14 1.47 7.65 -52.49 -0.40 1.06 16 48 H 0.09 1.50 6.71 -51.93 -0.35 1.15 16 49 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 50 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 51 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 413.70 15.07 6.23 6.23 Total: -1.00 -34.20 413.70 -9.47 -43.66 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -7.79 Total: 10.83 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -2.41 Total: 3.36 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.64 Total: -55.96 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: 0.17 Total: -24.41 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.20 -9.47 -43.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663452165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.519 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds