Wall clock time and date at job start Wed Apr 1 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46891 * 109.46905 * 2 1 4 4 C 1.46899 * 111.00581 * 76.02960 * 3 2 1 5 5 C 1.52996 * 109.47412 * 199.54394 * 4 3 2 6 6 N 1.46498 * 109.47015 * 174.88340 * 5 4 3 7 7 C 1.34782 * 119.99952 * 180.02562 * 6 5 4 8 8 O 1.21553 * 119.99745 * 359.97438 * 7 6 5 9 9 C 1.47846 * 120.00028 * 179.97438 * 7 6 5 10 10 C 1.39597 * 120.14507 * 359.97438 * 9 7 6 11 11 C 1.37933 * 119.85487 * 180.25171 * 10 9 7 12 12 C 1.38386 * 120.14353 * 359.44801 * 11 10 9 13 13 C 1.50698 * 119.85406 * 180.25856 * 12 11 10 14 14 C 1.38339 * 120.28979 * 0.55083 * 12 11 10 15 15 C 1.50699 * 119.92675 * 179.69930 * 14 12 11 16 16 C 1.37983 * 120.14533 * 359.72787 * 14 12 11 17 17 C 1.46906 * 110.99688 * 199.98287 * 3 2 1 18 18 C 1.50689 * 109.47472 * 66.04699 * 17 3 2 19 19 O 1.21300 * 120.00232 * 359.97438 * 18 17 3 20 20 N 1.34774 * 120.00280 * 180.02562 * 18 17 3 21 21 C 1.37104 * 120.00260 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99677 * 0.02562 * 21 20 18 23 23 C 1.38943 * 120.00046 * 179.97438 * 21 20 18 24 24 N 1.31418 * 120.00441 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00151 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47039 * 90.00055 * 25 23 21 27 27 H 1.48500 * 109.47164 * 210.00199 * 25 23 21 28 28 H 1.48502 * 109.46896 * 330.00219 * 25 23 21 29 29 H 1.08995 * 109.46808 * 174.87444 * 1 2 3 30 30 H 1.08993 * 109.47135 * 294.87344 * 1 2 3 31 31 H 1.09000 * 109.47011 * 54.87435 * 1 2 3 32 32 H 1.09002 * 109.47102 * 239.99825 * 2 1 3 33 33 H 1.08998 * 109.46736 * 119.99939 * 2 1 3 34 34 H 1.08992 * 109.47185 * 79.53984 * 4 3 2 35 35 H 1.09000 * 109.46611 * 319.54535 * 4 3 2 36 36 H 1.09002 * 109.47287 * 54.88614 * 5 4 3 37 37 H 1.08999 * 109.47475 * 294.88336 * 5 4 3 38 38 H 0.97005 * 120.00213 * 0.02562 * 6 5 4 39 39 H 1.08007 * 120.07075 * 359.97438 * 10 9 7 40 40 H 1.07998 * 119.93016 * 179.72273 * 11 10 9 41 41 H 1.09002 * 109.47000 * 270.29638 * 13 12 11 42 42 H 1.09001 * 109.47157 * 30.29341 * 13 12 11 43 43 H 1.09000 * 109.47175 * 150.30079 * 13 12 11 44 44 H 1.08995 * 109.47395 * 270.02948 * 15 14 12 45 45 H 1.09005 * 109.47025 * 30.02614 * 15 14 12 46 46 H 1.09000 * 109.47267 * 150.02138 * 15 14 12 47 47 H 1.08002 * 120.07064 * 179.97438 * 16 14 12 48 48 H 1.09006 * 109.46971 * 186.04643 * 17 3 2 49 49 H 1.09003 * 109.47145 * 306.03978 * 17 3 2 50 50 H 0.96996 * 119.99800 * 359.97438 * 20 18 17 51 51 H 0.96996 * 120.00290 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8830 1.9917 1.3308 5 6 1.9280 3.5157 1.2035 6 7 1.6699 4.1228 2.5116 7 6 1.6597 5.4643 2.6418 8 8 1.8651 6.1703 1.6739 9 6 1.3987 6.0769 3.9618 10 6 1.1619 5.2689 5.0752 11 6 0.9139 5.8469 6.3028 12 6 0.9109 7.2245 6.4344 13 6 0.6449 7.8490 7.7798 14 6 1.1449 8.0309 5.3350 15 6 1.1329 9.5303 5.4862 16 6 1.3886 7.4655 4.1001 17 6 3.4104 1.4516 -0.4687 18 6 3.4713 1.0499 -1.9198 19 8 2.4561 0.7381 -2.5059 20 7 4.6538 1.0359 -2.5661 21 6 4.7093 0.6699 -3.8862 22 1 3.8053 0.3931 -4.4083 23 6 5.9284 0.6561 -4.5527 24 7 7.0284 0.9933 -3.9176 25 14 6.0041 0.1567 -6.3511 26 1 5.8324 1.3586 -7.2063 27 1 7.3201 -0.4696 -6.6360 28 1 4.9200 -0.8159 -6.6408 29 1 -0.3633 -1.0235 -0.0918 30 1 -0.3633 0.4322 0.9323 31 1 -0.3633 0.5913 -0.8405 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.7005 1.6562 1.9688 35 1 0.9320 1.6917 1.7709 36 1 1.1678 3.8437 0.4945 37 1 2.9120 3.8219 0.8487 38 1 1.5063 3.5593 3.2841 39 1 1.1684 4.1935 4.9747 40 1 0.7261 5.2230 7.1641 41 1 -0.4262 8.0122 7.8993 42 1 1.0009 7.1832 8.5661 43 1 1.1676 8.8031 7.8472 44 1 0.1231 9.9044 5.3182 45 1 1.4562 9.7965 6.4926 46 1 1.8110 9.9744 4.7575 47 1 1.5707 8.0963 3.2426 48 1 3.7827 2.4701 -0.3577 49 1 4.0259 0.7734 0.1223 50 1 5.4657 1.2849 -2.0973 51 1 7.8794 0.9840 -4.3830 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663452165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:15 Heat of formation + Delta-G solvation = -73.266873 kcal Electronic energy + Delta-G solvation = -29366.683127 eV Core-core repulsion = 25264.659257 eV Total energy + Delta-G solvation = -4102.023870 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.36876 -40.48569 -39.75660 -38.34233 -36.10150 -35.71644 -34.42134 -33.30729 -33.06655 -32.07727 -30.59214 -28.72584 -28.06738 -27.20055 -25.95206 -24.14356 -23.06847 -22.90859 -22.25655 -21.04840 -20.76480 -19.86682 -18.69968 -17.93538 -17.47097 -16.96342 -16.52975 -16.42387 -16.33081 -16.15070 -15.98710 -15.68379 -15.47046 -15.38025 -15.14380 -14.84341 -14.61627 -14.43112 -14.03384 -13.90510 -13.68247 -13.58614 -13.46535 -13.42053 -13.02814 -12.86400 -12.78222 -12.73435 -12.62977 -12.55114 -12.41879 -12.24503 -12.14199 -12.02400 -11.87362 -11.76390 -11.41020 -11.11140 -10.27778 -10.24051 -9.99259 -9.80414 -9.54778 -9.23884 -8.46316 -5.94877 -0.17162 0.38229 1.37368 1.40623 1.53458 1.78737 1.93778 2.06073 2.29156 2.82754 2.85440 3.20567 3.36972 3.64988 3.77988 3.87508 3.92990 4.02478 4.03462 4.16408 4.24325 4.27200 4.29616 4.38200 4.45791 4.56125 4.58330 4.63699 4.71801 4.72513 4.78472 4.81386 4.82284 4.89844 4.94634 4.98485 5.03823 5.17773 5.21413 5.28828 5.30744 5.36781 5.40924 5.41466 5.42817 5.65223 5.89325 5.97499 6.08680 6.20451 6.46844 6.60865 7.13355 7.13962 7.56992 8.12819 8.71215 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016356 B = 0.001764 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.492313 B =15872.548115 C =17018.217926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 N -0.534 5.534 4 C 0.054 3.946 5 C 0.128 3.872 6 N -0.705 5.705 7 C 0.552 3.448 8 O -0.587 6.587 9 C -0.157 4.157 10 C -0.084 4.084 11 C -0.125 4.125 12 C -0.063 4.063 13 C -0.121 4.121 14 C -0.105 4.105 15 C -0.118 4.118 16 C -0.079 4.079 17 C 0.055 3.945 18 C 0.441 3.559 19 O -0.611 6.611 20 N -0.576 5.576 21 C -0.331 4.331 22 H 0.079 0.921 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.272 1.272 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.417 0.583 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.115 0.885 48 H 0.100 0.900 49 H 0.073 0.927 50 H 0.395 0.605 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.525 9.496 30.016 33.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.073 4.073 3 N -0.260 5.260 4 C -0.074 4.074 5 C 0.003 3.997 6 N -0.359 5.359 7 C 0.341 3.659 8 O -0.469 6.469 9 C -0.160 4.160 10 C -0.102 4.102 11 C -0.143 4.143 12 C -0.064 4.064 13 C -0.177 4.177 14 C -0.105 4.105 15 C -0.174 4.174 16 C -0.098 4.098 17 C -0.076 4.076 18 C 0.228 3.772 19 O -0.497 6.497 20 N -0.214 5.214 21 C -0.461 4.461 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.195 1.195 28 H -0.197 1.197 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.255 0.745 39 H 0.170 0.830 40 H 0.177 0.823 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.109 0.891 46 H 0.082 0.918 47 H 0.133 0.867 48 H 0.118 0.882 49 H 0.091 0.909 50 H 0.228 0.772 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.147 10.009 28.539 32.592 hybrid contribution 1.245 -0.679 -0.681 1.573 sum -10.902 9.330 27.858 31.337 Atomic orbital electron populations 1.21640 0.93790 1.01699 1.01829 1.22101 0.97212 0.87447 1.00568 1.61346 1.18803 1.20326 1.25497 1.22249 1.03857 0.91949 0.89334 1.21158 1.00869 0.93287 0.84356 1.45605 1.71983 1.06045 1.12223 1.18761 0.75976 0.82402 0.88752 1.90775 1.51381 1.62860 1.41859 1.19832 1.08494 0.94822 0.92843 1.21542 0.96547 1.00537 0.91580 1.21364 1.00341 0.94563 0.98006 1.20415 0.95812 0.93870 0.96274 1.21013 1.03185 1.01791 0.91746 1.20004 1.00661 0.97720 0.92151 1.20931 1.03105 0.89450 1.03937 1.21193 0.97044 0.93764 0.97814 1.21783 0.90892 1.02825 0.92072 1.20753 0.83336 0.82959 0.90123 1.90484 1.35163 1.54194 1.69813 1.41950 1.08269 1.60231 1.10934 1.19656 0.94896 1.43940 0.87584 0.90290 1.26042 0.94099 0.96961 1.04310 1.69678 0.99097 1.48534 1.38979 0.84927 0.77863 0.78484 0.77043 1.19898 1.19458 1.19655 0.91511 0.91008 0.94301 0.92815 0.93009 0.91674 0.87601 0.92697 0.92982 0.74481 0.82960 0.82296 0.89697 0.89855 0.90110 0.90221 0.89102 0.91823 0.86689 0.88218 0.90947 0.77167 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.96 71.99 0.72 -2.69 16 2 C 0.05 1.63 5.18 86.31 0.45 2.08 16 3 N -0.53 -16.76 4.10 -900.82 -3.70 -20.46 16 4 C 0.05 1.16 4.92 86.30 0.42 1.58 16 5 C 0.13 3.27 5.70 86.38 0.49 3.77 16 6 N -0.71 -14.44 5.51 -465.97 -2.57 -17.01 16 7 C 0.55 14.80 7.77 86.79 0.67 15.47 16 8 O -0.59 -21.74 16.35 -3.88 -0.06 -21.80 16 9 C -0.16 -3.29 5.87 -20.09 -0.12 -3.41 16 10 C -0.08 -1.10 9.54 22.53 0.21 -0.88 16 11 C -0.13 -1.30 9.68 22.23 0.22 -1.08 16 12 C -0.06 -0.74 5.89 -19.81 -0.12 -0.85 16 13 C -0.12 -0.64 9.59 71.24 0.68 0.04 16 14 C -0.11 -1.64 5.87 -19.90 -0.12 -1.75 16 15 C -0.12 -1.26 9.60 71.24 0.68 -0.58 16 16 C -0.08 -1.70 9.24 22.53 0.21 -1.49 16 17 C 0.06 1.96 5.27 85.55 0.45 2.41 16 18 C 0.44 21.47 7.29 87.65 0.64 22.11 16 19 O -0.61 -34.11 14.12 -3.09 -0.04 -34.15 16 20 N -0.58 -30.41 5.29 -306.99 -1.62 -32.03 16 21 C -0.33 -19.25 9.68 84.04 0.81 -18.43 16 22 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 23 C -0.01 -0.80 5.50 84.92 0.47 -0.34 16 24 N -0.92 -50.97 13.05 21.66 0.28 -50.69 16 25 Si 0.99 44.05 29.55 68.60 2.03 46.08 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 1.42 6.91 -2.39 -0.02 1.40 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 2.11 5.85 -2.39 -0.01 2.10 16 33 H 0.05 1.25 7.99 -2.39 -0.02 1.23 16 34 H 0.07 1.13 8.00 -2.39 -0.02 1.11 16 35 H 0.11 1.76 6.58 -2.39 -0.02 1.74 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.54 6.95 -2.39 -0.02 1.52 16 38 H 0.42 5.00 6.51 -92.70 -0.60 4.40 16 39 H 0.15 1.03 6.41 -2.91 -0.02 1.01 16 40 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 41 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.08 0.24 8.08 -2.39 -0.02 0.22 16 43 H 0.08 0.33 5.93 -2.39 -0.01 0.32 16 44 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.09 0.60 5.93 -2.38 -0.01 0.59 16 46 H 0.06 0.74 8.08 -2.39 -0.02 0.73 16 47 H 0.12 2.83 7.65 -2.91 -0.02 2.81 16 48 H 0.10 3.33 6.71 -2.38 -0.02 3.31 16 49 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 50 H 0.39 19.90 7.90 -92.71 -0.73 19.17 16 51 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -79.58 413.70 0.73 -78.85 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: -0.37 Total: 35.26 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 6.78 Total: 15.94 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -7.60 Total: -120.18 kcal Atomic # 8 Polarization: -55.85 SS G_CDS: -0.11 Total: -55.95 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -79.58 0.73 -78.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663452165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.587 kcal (2) G-P(sol) polarization free energy of solvation -79.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds