Wall clock time and date at job start Wed Apr 1 2020 05:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46788 * 2 1 4 4 C 1.46501 * 120.00122 * 277.51781 * 3 2 1 5 5 C 1.52995 * 109.47029 * 269.99789 * 4 3 2 6 6 N 1.46898 * 109.46855 * 179.97438 * 5 4 3 7 7 C 1.46905 * 110.99833 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47116 * 180.02562 * 7 6 5 9 9 O 1.21295 * 119.99950 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99983 * 179.97438 * 8 7 6 11 11 C 1.37091 * 120.00010 * 179.97438 * 10 8 7 12 12 H 1.08003 * 120.00043 * 0.02562 * 11 10 8 13 13 C 1.38954 * 120.00215 * 179.97438 * 11 10 8 14 14 N 1.31405 * 119.99896 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00066 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46946 * 90.00753 * 15 13 11 17 17 H 1.48501 * 109.46963 * 210.00490 * 15 13 11 18 18 H 1.48495 * 109.47190 * 330.00598 * 15 13 11 19 19 C 1.34779 * 119.99891 * 97.51992 * 3 2 1 20 20 O 1.21555 * 120.00334 * 185.75516 * 19 3 2 21 21 C 1.47851 * 120.00035 * 5.75157 * 19 3 2 22 22 C 1.39598 * 120.14234 * 314.34210 * 21 19 3 23 23 C 1.37939 * 119.85090 * 180.25946 * 22 21 19 24 24 C 1.38382 * 120.14302 * 359.43810 * 23 22 21 25 25 C 1.50695 * 119.85245 * 180.26347 * 24 23 22 26 26 C 1.38334 * 120.29268 * 0.56362 * 24 23 22 27 27 C 1.50706 * 119.92789 * 179.69904 * 26 24 23 28 28 C 1.37980 * 120.14741 * 359.72034 * 26 24 23 29 29 H 1.08998 * 109.47241 * 69.38574 * 1 2 3 30 30 H 1.09004 * 109.47196 * 189.38037 * 1 2 3 31 31 H 1.08998 * 109.47608 * 309.37817 * 1 2 3 32 32 H 1.08998 * 109.47311 * 240.00375 * 2 1 3 33 33 H 1.09001 * 109.47404 * 119.99805 * 2 1 3 34 34 H 1.08994 * 109.46918 * 30.00549 * 4 3 2 35 35 H 1.09005 * 109.46991 * 150.00233 * 4 3 2 36 36 H 1.09003 * 109.47672 * 300.00013 * 5 4 3 37 37 H 1.09005 * 109.46872 * 60.00371 * 5 4 3 38 38 H 1.00903 * 110.99847 * 56.05196 * 6 5 4 39 39 H 1.08999 * 109.46882 * 299.99915 * 7 6 5 40 40 H 1.08993 * 109.47476 * 60.00260 * 7 6 5 41 41 H 0.97000 * 119.99873 * 0.02562 * 10 8 7 42 42 H 0.96996 * 120.00378 * 179.97438 * 14 13 11 43 43 H 1.08000 * 120.07606 * 359.97438 * 22 21 19 44 44 H 1.08001 * 119.92483 * 179.72465 * 23 22 21 45 45 H 1.08999 * 109.47171 * 270.29490 * 25 24 23 46 46 H 1.08999 * 109.47279 * 30.30142 * 25 24 23 47 47 H 1.08999 * 109.47149 * 150.30050 * 25 24 23 48 48 H 1.08998 * 109.47154 * 270.01636 * 27 26 24 49 49 H 1.08992 * 109.46729 * 30.02402 * 27 26 24 50 50 H 1.09002 * 109.46739 * 150.02205 * 27 26 24 51 51 H 1.08004 * 120.08000 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1059 2.1272 -1.2578 5 6 3.4847 1.9103 -1.8843 6 7 3.5723 2.6579 -3.1459 7 6 4.8855 2.4723 -3.7776 8 6 4.9381 3.2527 -5.0658 9 8 3.9763 3.9002 -5.4223 10 7 6.0541 3.2320 -5.8212 11 6 6.1017 3.9415 -6.9932 12 1 5.2450 4.5174 -7.3111 13 6 7.2524 3.9206 -7.7718 14 7 8.2949 3.2204 -7.3849 15 14 7.3170 4.8868 -9.3692 16 1 7.8236 6.2564 -9.0992 17 1 8.2247 4.2028 -10.3250 18 1 5.9542 4.9693 -9.9533 19 6 2.3868 1.9657 1.1572 20 8 2.6921 3.1422 1.1737 21 6 2.4198 1.1759 2.4066 22 6 1.3573 0.3299 2.7294 23 6 1.3919 -0.4001 3.8993 24 6 2.4820 -0.3042 4.7463 25 6 2.5157 -1.1093 6.0197 26 6 3.5382 0.5322 4.4322 27 6 4.7182 0.6355 5.3640 28 6 3.5135 1.2724 3.2681 29 1 -0.3633 0.3618 -0.9618 30 1 -0.3634 -1.0140 0.1675 31 1 -0.3634 0.6520 0.7943 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3355 1.7748 -1.9436 35 1 1.9591 3.1893 -1.0613 36 1 4.2551 2.2628 -1.1985 37 1 3.6315 0.8482 -2.0808 38 1 3.3757 3.6368 -3.0005 39 1 5.6658 2.8288 -3.1052 40 1 5.0419 1.4141 -3.9869 41 1 6.8233 2.7145 -5.5359 42 1 9.0981 3.2055 -7.9285 43 1 0.5080 0.2508 2.0670 44 1 0.5685 -1.0516 4.1524 45 1 2.0622 -0.5329 6.8261 46 1 1.9598 -2.0362 5.8784 47 1 3.5495 -1.3411 6.2758 48 1 4.5409 1.4307 6.0881 49 1 4.8509 -0.3107 5.8884 50 1 5.6164 0.8613 4.7891 51 1 4.3385 1.9254 3.0242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699217834.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:27 Heat of formation + Delta-G solvation = -42.714571 kcal Electronic energy + Delta-G solvation = -29531.971759 eV Core-core repulsion = 25431.272736 eV Total energy + Delta-G solvation = -4100.699023 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.89274 -39.18621 -38.24426 -36.64515 -35.42590 -33.94619 -33.64804 -32.56292 -31.40416 -31.13515 -29.40029 -28.05735 -27.18028 -25.86320 -24.05282 -23.81066 -22.74171 -22.30959 -21.53155 -19.49122 -19.04172 -17.86287 -17.51821 -16.96765 -16.38480 -16.02272 -15.82800 -15.49178 -15.28152 -14.84059 -14.68006 -14.46263 -14.39002 -14.11493 -13.79850 -13.72569 -13.44471 -13.24679 -13.22867 -13.15606 -12.97910 -12.85169 -12.46556 -12.34308 -12.23965 -12.10761 -11.97549 -11.67671 -11.50506 -11.47783 -11.45105 -11.19252 -11.09061 -10.94775 -10.37312 -10.19650 -10.07700 -9.48538 -9.22045 -8.97179 -8.90351 -8.43083 -8.05579 -7.93514 -6.39283 -3.80014 0.61112 0.96583 2.44717 2.68419 3.19951 3.28292 3.34351 3.34622 3.93740 4.09010 4.16588 4.33888 4.38910 4.45213 4.51718 4.60568 4.70939 4.79824 4.85791 4.97184 5.03076 5.06806 5.09379 5.19449 5.21449 5.24473 5.28749 5.29884 5.36717 5.38586 5.41149 5.42830 5.53981 5.64650 5.72380 5.77242 5.78829 5.87970 5.92872 5.95970 6.01000 6.03344 6.19463 6.25136 6.33430 6.53151 7.12085 7.20260 7.57633 7.66313 7.92625 8.08853 8.63934 9.20323 9.56899 10.08480 10.78543 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019743 B = 0.001677 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.886510 B =16697.281589 C =17510.629890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.092 3.908 3 N -0.604 5.604 4 C 0.116 3.884 5 C 0.047 3.953 6 N -0.666 5.666 7 C 0.053 3.947 8 C 0.442 3.558 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 C 0.558 3.442 20 O -0.530 6.530 21 C -0.128 4.128 22 C -0.105 4.105 23 C -0.124 4.124 24 C -0.069 4.069 25 C -0.121 4.121 26 C -0.092 4.092 27 C -0.118 4.118 28 C -0.065 4.065 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.351 0.649 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.142 0.858 44 H 0.127 0.873 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.068 0.932 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.761 -13.748 27.858 33.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.031 4.031 3 N -0.336 5.336 4 C -0.006 4.006 5 C -0.084 4.084 6 N -0.299 5.299 7 C -0.080 4.080 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.201 5.201 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C 0.347 3.653 20 O -0.406 6.406 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.142 4.142 24 C -0.069 4.069 25 C -0.177 4.177 26 C -0.093 4.093 27 C -0.175 4.175 28 C -0.083 4.083 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.171 0.829 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.159 0.841 44 H 0.145 0.855 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.091 0.909 50 H 0.087 0.913 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.358 -13.195 27.128 32.600 hybrid contribution 1.178 0.574 -0.175 1.322 sum -11.180 -12.620 26.954 31.793 Atomic orbital electron populations 1.22356 0.95703 1.02517 1.02990 1.21878 0.94575 0.82444 1.04177 1.47858 1.64466 1.14456 1.06858 1.21428 0.97739 0.97965 0.83492 1.22252 0.96345 0.99389 0.90440 1.60016 1.30128 1.16819 1.22955 1.21655 0.89903 1.01070 0.95397 1.19795 0.84514 0.86426 0.86573 1.90522 1.36234 1.46494 1.73423 1.41856 1.13485 1.44206 1.20518 1.19716 1.00737 1.25282 0.97146 0.87895 1.25265 0.95044 0.97768 0.99901 1.69611 1.04185 1.41018 1.39555 0.85847 0.78325 0.79162 0.80889 1.20433 1.20941 1.19398 1.18459 0.76741 0.86783 0.83346 1.90812 1.48208 1.15588 1.86039 1.19847 0.97168 0.99904 0.96141 1.21817 0.98415 0.94723 0.97364 1.20968 0.98191 1.00701 0.94323 1.19962 0.93702 0.96617 0.96606 1.20921 1.03145 0.99146 0.94514 1.19712 0.96575 0.97182 0.95785 1.20880 0.95364 1.02728 0.98483 1.21049 0.97403 0.97308 0.92571 0.91491 0.91025 0.91923 0.89908 0.89206 0.89168 0.89532 0.95246 0.91090 0.82949 0.93838 0.89626 0.77461 0.91897 0.84114 0.85457 0.90827 0.91354 0.90878 0.90892 0.90945 0.91296 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 9.14 37.16 0.34 -0.71 16 2 C 0.09 0.68 5.60 -4.04 -0.02 0.66 16 3 N -0.60 -6.45 2.48 -174.80 -0.43 -6.88 16 4 C 0.12 1.40 5.73 -4.04 -0.02 1.38 16 5 C 0.05 0.63 6.01 -3.83 -0.02 0.61 16 6 N -0.67 -11.35 6.13 -115.06 -0.70 -12.05 16 7 C 0.05 0.97 6.17 -4.97 -0.03 0.94 16 8 C 0.44 10.76 7.82 -10.98 -0.09 10.67 16 9 O -0.58 -16.23 15.78 5.54 0.09 -16.14 16 10 N -0.56 -14.66 5.29 -10.96 -0.06 -14.72 16 11 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 12 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 15 Si 0.93 21.37 29.55 -169.99 -5.02 16.34 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C 0.56 7.13 7.27 -12.33 -0.09 7.04 16 20 O -0.53 -8.85 16.54 5.32 0.09 -8.76 16 21 C -0.13 -1.34 5.08 -104.97 -0.53 -1.87 16 22 C -0.11 -0.84 7.42 -39.18 -0.29 -1.13 16 23 C -0.12 -0.84 9.68 -39.64 -0.38 -1.22 16 24 C -0.07 -0.48 5.89 -104.54 -0.62 -1.09 16 25 C -0.12 -0.53 9.59 36.00 0.35 -0.18 16 26 C -0.09 -0.74 5.87 -104.68 -0.61 -1.36 16 27 C -0.12 -0.68 9.60 36.01 0.35 -0.34 16 28 C -0.06 -0.65 9.34 -39.19 -0.37 -1.01 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.39 6.32 -51.93 -0.33 0.07 16 32 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 33 H 0.09 0.61 5.10 -51.93 -0.26 0.35 16 34 H 0.09 0.99 8.07 -51.93 -0.42 0.57 16 35 H 0.09 1.19 7.35 -51.93 -0.38 0.81 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.35 6.28 8.43 -39.29 -0.33 5.95 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.39 9.74 7.90 -40.82 -0.32 9.41 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.14 0.92 3.71 -52.49 -0.19 0.72 16 44 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 45 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 47 H 0.07 0.27 5.93 -51.93 -0.31 -0.04 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.31 5.93 -51.93 -0.31 0.01 16 50 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 51 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 415.27 15.07 6.26 6.26 Total: -1.00 -34.56 415.27 -9.21 -43.77 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -7.86 Total: 12.15 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -2.29 Total: 4.22 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.47 Total: -57.84 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: 0.18 Total: -24.90 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.56 -9.21 -43.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699217834.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.053 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds