Wall clock time and date at job start Wed Apr 1 2020 05:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46788 * 2 1 4 4 C 1.46501 * 120.00122 * 277.51781 * 3 2 1 5 5 C 1.52995 * 109.47029 * 269.99789 * 4 3 2 6 6 N 1.46898 * 109.46855 * 179.97438 * 5 4 3 7 7 C 1.46905 * 110.99833 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47116 * 180.02562 * 7 6 5 9 9 O 1.21295 * 119.99950 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99983 * 179.97438 * 8 7 6 11 11 C 1.37091 * 120.00010 * 179.97438 * 10 8 7 12 12 H 1.08003 * 120.00043 * 0.02562 * 11 10 8 13 13 C 1.38954 * 120.00215 * 179.97438 * 11 10 8 14 14 N 1.31405 * 119.99896 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00066 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46946 * 90.00753 * 15 13 11 17 17 H 1.48501 * 109.46963 * 210.00490 * 15 13 11 18 18 H 1.48495 * 109.47190 * 330.00598 * 15 13 11 19 19 C 1.34779 * 119.99891 * 97.51992 * 3 2 1 20 20 O 1.21555 * 120.00334 * 185.75516 * 19 3 2 21 21 C 1.47851 * 120.00035 * 5.75157 * 19 3 2 22 22 C 1.39598 * 120.14234 * 314.34210 * 21 19 3 23 23 C 1.37939 * 119.85090 * 180.25946 * 22 21 19 24 24 C 1.38382 * 120.14302 * 359.43810 * 23 22 21 25 25 C 1.50695 * 119.85245 * 180.26347 * 24 23 22 26 26 C 1.38334 * 120.29268 * 0.56362 * 24 23 22 27 27 C 1.50706 * 119.92789 * 179.69904 * 26 24 23 28 28 C 1.37980 * 120.14741 * 359.72034 * 26 24 23 29 29 H 1.08998 * 109.47241 * 69.38574 * 1 2 3 30 30 H 1.09004 * 109.47196 * 189.38037 * 1 2 3 31 31 H 1.08998 * 109.47608 * 309.37817 * 1 2 3 32 32 H 1.08998 * 109.47311 * 240.00375 * 2 1 3 33 33 H 1.09001 * 109.47404 * 119.99805 * 2 1 3 34 34 H 1.08994 * 109.46918 * 30.00549 * 4 3 2 35 35 H 1.09005 * 109.46991 * 150.00233 * 4 3 2 36 36 H 1.09003 * 109.47672 * 300.00013 * 5 4 3 37 37 H 1.09005 * 109.46872 * 60.00371 * 5 4 3 38 38 H 1.00903 * 110.99847 * 56.05196 * 6 5 4 39 39 H 1.08999 * 109.46882 * 299.99915 * 7 6 5 40 40 H 1.08993 * 109.47476 * 60.00260 * 7 6 5 41 41 H 0.97000 * 119.99873 * 0.02562 * 10 8 7 42 42 H 0.96996 * 120.00378 * 179.97438 * 14 13 11 43 43 H 1.08000 * 120.07606 * 359.97438 * 22 21 19 44 44 H 1.08001 * 119.92483 * 179.72465 * 23 22 21 45 45 H 1.08999 * 109.47171 * 270.29490 * 25 24 23 46 46 H 1.08999 * 109.47279 * 30.30142 * 25 24 23 47 47 H 1.08999 * 109.47149 * 150.30050 * 25 24 23 48 48 H 1.08998 * 109.47154 * 270.01636 * 27 26 24 49 49 H 1.08992 * 109.46729 * 30.02402 * 27 26 24 50 50 H 1.09002 * 109.46739 * 150.02205 * 27 26 24 51 51 H 1.08004 * 120.08000 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1059 2.1272 -1.2578 5 6 3.4847 1.9103 -1.8843 6 7 3.5723 2.6579 -3.1459 7 6 4.8855 2.4723 -3.7776 8 6 4.9381 3.2527 -5.0658 9 8 3.9763 3.9002 -5.4223 10 7 6.0541 3.2320 -5.8212 11 6 6.1017 3.9415 -6.9932 12 1 5.2450 4.5174 -7.3111 13 6 7.2524 3.9206 -7.7718 14 7 8.2949 3.2204 -7.3849 15 14 7.3170 4.8868 -9.3692 16 1 7.8236 6.2564 -9.0992 17 1 8.2247 4.2028 -10.3250 18 1 5.9542 4.9693 -9.9533 19 6 2.3868 1.9657 1.1572 20 8 2.6921 3.1422 1.1737 21 6 2.4198 1.1759 2.4066 22 6 1.3573 0.3299 2.7294 23 6 1.3919 -0.4001 3.8993 24 6 2.4820 -0.3042 4.7463 25 6 2.5157 -1.1093 6.0197 26 6 3.5382 0.5322 4.4322 27 6 4.7182 0.6355 5.3640 28 6 3.5135 1.2724 3.2681 29 1 -0.3633 0.3618 -0.9618 30 1 -0.3634 -1.0140 0.1675 31 1 -0.3634 0.6520 0.7943 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3355 1.7748 -1.9436 35 1 1.9591 3.1893 -1.0613 36 1 4.2551 2.2628 -1.1985 37 1 3.6315 0.8482 -2.0808 38 1 3.3757 3.6368 -3.0005 39 1 5.6658 2.8288 -3.1052 40 1 5.0419 1.4141 -3.9869 41 1 6.8233 2.7145 -5.5359 42 1 9.0981 3.2055 -7.9285 43 1 0.5080 0.2508 2.0670 44 1 0.5685 -1.0516 4.1524 45 1 2.0622 -0.5329 6.8261 46 1 1.9598 -2.0362 5.8784 47 1 3.5495 -1.3411 6.2758 48 1 4.5409 1.4307 6.0881 49 1 4.8509 -0.3107 5.8884 50 1 5.6164 0.8613 4.7891 51 1 4.3385 1.9254 3.0242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699217834.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:26 Heat of formation + Delta-G solvation = -65.865522 kcal Electronic energy + Delta-G solvation = -29532.975659 eV Core-core repulsion = 25431.272736 eV Total energy + Delta-G solvation = -4101.702923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.69567 -40.21844 -39.86050 -37.72136 -36.67295 -35.86252 -34.43471 -33.30416 -33.11983 -32.13490 -30.43502 -28.71827 -28.05850 -27.21841 -25.66841 -24.46059 -23.74557 -22.99319 -22.31291 -21.17635 -20.13456 -19.86692 -18.33497 -17.89541 -17.81540 -17.13984 -16.78935 -16.61499 -16.47088 -16.14268 -15.90003 -15.52911 -15.37381 -15.15255 -14.97303 -14.82221 -14.71967 -14.34520 -13.97710 -13.72814 -13.69471 -13.59447 -13.53037 -13.44576 -13.36928 -12.99307 -12.93711 -12.82890 -12.73953 -12.57975 -12.43580 -12.26482 -12.12447 -12.11316 -12.01961 -11.71741 -11.52968 -11.02539 -10.42458 -10.04392 -9.92692 -9.76041 -9.50337 -9.48437 -8.48512 -5.97750 -0.05494 0.36152 1.37198 1.41002 1.52998 1.54811 1.83048 2.01265 2.28517 2.69772 2.92404 3.18162 3.36121 3.52013 3.80521 3.89575 3.94340 3.95887 4.02697 4.06362 4.24766 4.26172 4.28323 4.32982 4.42487 4.43602 4.52542 4.53371 4.60395 4.70404 4.75448 4.78970 4.81130 4.83087 4.91402 4.93869 4.94881 4.98415 5.17690 5.30071 5.31436 5.34047 5.39039 5.43948 5.44520 5.65550 5.79138 5.97377 6.02628 6.22275 6.26642 6.57076 6.98691 7.09818 7.52449 8.07569 8.68936 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019743 B = 0.001677 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.886510 B =16697.281589 C =17510.629890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.087 3.913 3 N -0.597 5.597 4 C 0.122 3.878 5 C 0.056 3.944 6 N -0.674 5.674 7 C 0.066 3.934 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.571 5.571 11 C -0.337 4.337 12 H 0.080 0.920 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.995 3.005 16 H -0.271 1.271 17 H -0.269 1.269 18 H -0.272 1.272 19 C 0.553 3.447 20 O -0.584 6.584 21 C -0.149 4.149 22 C -0.102 4.102 23 C -0.121 4.121 24 C -0.068 4.068 25 C -0.120 4.120 26 C -0.100 4.100 27 C -0.118 4.118 28 C -0.086 4.086 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.017 0.983 37 H 0.089 0.911 38 H 0.343 0.657 39 H 0.060 0.940 40 H 0.109 0.891 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.156 0.844 44 H 0.159 0.841 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.091 0.909 50 H 0.063 0.937 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.420 -16.350 29.119 35.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.034 4.034 3 N -0.328 5.328 4 C -0.001 4.001 5 C -0.074 4.074 6 N -0.306 5.306 7 C -0.066 4.066 8 C 0.225 3.775 9 O -0.508 6.508 10 N -0.209 5.209 11 C -0.466 4.466 12 H 0.098 0.902 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.819 3.181 16 H -0.197 1.197 17 H -0.194 1.194 18 H -0.197 1.197 19 C 0.343 3.657 20 O -0.464 6.464 21 C -0.152 4.152 22 C -0.120 4.120 23 C -0.139 4.139 24 C -0.068 4.068 25 C -0.176 4.176 26 C -0.101 4.101 27 C -0.174 4.174 28 C -0.105 4.105 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.036 0.964 37 H 0.107 0.893 38 H 0.162 0.838 39 H 0.078 0.922 40 H 0.127 0.873 41 H 0.230 0.770 42 H 0.088 0.912 43 H 0.173 0.827 44 H 0.176 0.824 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.096 0.904 49 H 0.110 0.890 50 H 0.082 0.918 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.013 -15.861 28.407 35.041 hybrid contribution 1.359 1.321 -0.487 1.957 sum -11.654 -14.540 27.920 33.568 Atomic orbital electron populations 1.22330 0.94224 1.04018 1.02538 1.22153 0.95739 0.80396 1.05146 1.47940 1.63617 1.15565 1.05705 1.21268 0.97287 0.97194 0.84362 1.22243 0.96840 0.99646 0.88669 1.60043 1.29203 1.16655 1.24699 1.21530 0.91277 1.01238 0.92595 1.20777 0.83267 0.85718 0.87743 1.90490 1.37467 1.48124 1.74761 1.41915 1.14196 1.44353 1.20390 1.19698 1.00909 1.26984 0.99019 0.90239 1.26076 0.94212 0.98254 1.02721 1.69671 1.04508 1.41240 1.40648 0.84895 0.78268 0.78030 0.76931 1.19676 1.19368 1.19709 1.18949 0.75795 0.86358 0.84562 1.90771 1.50813 1.17914 1.86950 1.19770 0.98653 1.01298 0.95512 1.21980 0.97821 0.94040 0.98193 1.21352 0.98871 1.00292 0.93381 1.20365 0.93024 0.95872 0.97526 1.20997 1.04111 0.99402 0.93136 1.19967 0.97827 0.96974 0.95286 1.20929 0.94357 1.03920 0.98203 1.21071 0.97316 0.98256 0.93890 0.92079 0.88401 0.92337 0.88888 0.88280 0.87686 0.91766 0.96450 0.89281 0.83850 0.92236 0.87271 0.76957 0.91228 0.82724 0.82388 0.89962 0.89788 0.90098 0.90426 0.89033 0.91760 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 9.14 71.98 0.66 -1.01 16 2 C 0.09 1.14 5.60 86.38 0.48 1.62 16 3 N -0.60 -12.74 2.48 -825.22 -2.04 -14.78 16 4 C 0.12 2.99 5.73 86.38 0.49 3.48 16 5 C 0.06 1.51 6.01 86.30 0.52 2.03 16 6 N -0.67 -22.98 6.13 -517.93 -3.17 -26.16 16 7 C 0.07 2.42 6.17 85.56 0.53 2.95 16 8 C 0.44 21.70 7.82 87.66 0.69 22.38 16 9 O -0.62 -35.66 15.78 -3.08 -0.05 -35.71 16 10 N -0.57 -30.26 5.29 -306.98 -1.62 -31.89 16 11 C -0.34 -19.59 9.68 84.04 0.81 -18.78 16 12 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 13 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 14 N -0.92 -50.42 13.05 21.66 0.28 -50.14 16 15 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 C 0.55 14.80 7.27 86.79 0.63 15.43 16 20 O -0.58 -21.04 16.54 -3.89 -0.06 -21.11 16 21 C -0.15 -3.18 5.08 -20.09 -0.10 -3.28 16 22 C -0.10 -1.48 7.42 22.53 0.17 -1.31 16 23 C -0.12 -1.31 9.68 22.23 0.22 -1.09 16 24 C -0.07 -0.79 5.89 -19.81 -0.12 -0.90 16 25 C -0.12 -0.65 9.59 71.23 0.68 0.04 16 26 C -0.10 -1.55 5.87 -19.90 -0.12 -1.66 16 27 C -0.12 -1.26 9.60 71.24 0.68 -0.58 16 28 C -0.09 -1.82 9.34 22.53 0.21 -1.61 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.06 0.63 6.32 -2.39 -0.02 0.61 16 32 H 0.09 1.06 8.12 -2.39 -0.02 1.04 16 33 H 0.10 1.15 5.10 -2.39 -0.01 1.14 16 34 H 0.10 2.25 8.07 -2.39 -0.02 2.23 16 35 H 0.06 1.88 7.35 -2.38 -0.02 1.86 16 36 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.34 12.67 8.43 -89.69 -0.76 11.92 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 41 H 0.40 19.91 7.90 -92.71 -0.73 19.18 16 42 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 43 H 0.16 1.69 3.71 -2.91 -0.01 1.68 16 44 H 0.16 0.72 8.06 -2.91 -0.02 0.69 16 45 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.08 0.23 8.08 -2.39 -0.02 0.21 16 47 H 0.08 0.33 5.93 -2.39 -0.01 0.31 16 48 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.09 0.60 5.93 -2.39 -0.01 0.59 16 50 H 0.06 0.73 8.08 -2.39 -0.02 0.71 16 51 H 0.11 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -77.53 415.27 1.74 -75.79 By element: Atomic # 1 Polarization: 41.36 SS G_CDS: -0.52 Total: 40.84 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 6.90 Total: 17.49 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -6.56 Total: -122.96 kcal Atomic # 8 Polarization: -56.71 SS G_CDS: -0.11 Total: -56.82 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -77.53 1.74 -75.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699217834.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.926 kcal (2) G-P(sol) polarization free energy of solvation -77.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds