Wall clock time and date at job start Wed Apr 1 2020 05:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.46821 * 2 1 4 4 C 1.36932 * 120.00265 * 275.30946 * 3 2 1 5 5 H 1.08006 * 119.99698 * 37.57784 * 4 3 2 6 6 C 1.38811 * 120.00066 * 217.58142 * 4 3 2 7 7 N 1.31620 * 120.00381 * 21.42674 * 6 4 3 8 8 Si 1.86801 * 119.99863 * 201.42330 * 6 4 3 9 9 H 1.48510 * 109.47015 * 90.00123 * 8 6 4 10 10 H 1.48494 * 109.47316 * 209.99967 * 8 6 4 11 11 H 1.48500 * 109.47109 * 330.00036 * 8 6 4 12 12 C 1.46500 * 119.99848 * 95.31387 * 3 2 1 13 13 C 1.53004 * 109.46892 * 269.99747 * 12 3 2 14 14 C 1.53000 * 109.47002 * 179.97438 * 13 12 3 15 15 N 1.46497 * 109.47066 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00248 * 180.02562 * 15 14 13 17 17 O 1.21286 * 119.99999 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00413 * 180.02562 * 16 15 14 19 19 H 1.08994 * 110.43547 * 59.29398 * 18 16 15 20 20 C 1.54813 * 110.48518 * 296.75180 * 18 16 15 21 21 C 1.54995 * 102.09085 * 262.07242 * 20 18 16 22 22 O 1.44380 * 103.49239 * 322.97298 * 21 20 18 23 23 C 1.44052 * 106.97866 * 40.14167 * 22 21 20 24 24 H 1.08998 * 109.98733 * 92.76760 * 23 22 21 25 25 C 1.50695 * 109.92832 * 214.02515 * 23 22 21 26 26 C 1.38656 * 120.79102 * 37.38351 * 25 23 22 27 27 C 1.38207 * 119.16198 * 179.80024 * 26 25 23 28 28 N 1.31869 * 120.76284 * 0.48812 * 27 26 25 29 29 C 1.31868 * 121.72888 * 359.73866 * 28 27 26 30 30 C 1.38209 * 120.76321 * 0.02779 * 29 28 27 31 31 H 1.09008 * 109.46926 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47278 * 299.99738 * 1 2 3 33 33 H 1.08995 * 109.47522 * 60.00275 * 1 2 3 34 34 H 1.08996 * 109.47278 * 240.00262 * 2 1 3 35 35 H 1.08995 * 109.47522 * 119.99725 * 2 1 3 36 36 H 0.96993 * 120.00265 * 180.02562 * 7 6 4 37 37 H 1.08997 * 109.47194 * 149.99591 * 12 3 2 38 38 H 1.09001 * 109.47298 * 29.99747 * 12 3 2 39 39 H 1.08997 * 109.47268 * 60.00479 * 13 12 3 40 40 H 1.09001 * 109.47149 * 300.00091 * 13 12 3 41 41 H 1.09007 * 109.47206 * 59.99916 * 14 13 12 42 42 H 1.09001 * 109.47270 * 300.00050 * 14 13 12 43 43 H 0.97006 * 119.99922 * 0.02562 * 15 14 13 44 44 H 1.09006 * 110.90904 * 20.26788 * 20 18 16 45 45 H 1.09000 * 110.90759 * 143.87027 * 20 18 16 46 46 H 1.08992 * 110.62172 * 81.48020 * 21 20 18 47 47 H 1.09005 * 110.61423 * 204.31940 * 21 20 18 48 48 H 1.07999 * 120.41765 * 0.02562 * 26 25 23 49 49 H 1.07997 * 119.61605 * 180.20525 * 27 26 25 50 50 H 1.08001 * 119.61947 * 180.02562 * 29 28 27 51 51 H 1.07998 * 120.41602 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1430 2.0634 -1.1807 5 1 1.4103 1.9279 -1.9627 6 6 3.2110 2.9290 -1.3727 7 7 4.3026 2.7982 -0.6490 8 14 3.0991 4.2796 -2.6584 9 1 2.5373 5.5071 -2.0393 10 1 4.4547 4.5697 -3.1908 11 1 2.2164 3.8358 -3.7670 12 6 2.3731 2.0327 1.2633 13 6 1.1424 2.7382 1.8366 14 6 1.5129 3.4180 3.1563 15 7 0.3347 4.0941 3.7049 16 6 0.4245 4.7651 4.8703 17 8 1.4806 4.8090 5.4651 18 6 -0.7876 5.4601 5.4350 19 1 -1.5912 4.7441 5.6069 20 6 -1.2595 6.5858 4.4827 21 6 -0.6230 7.8438 5.1265 22 8 -0.7295 7.5876 6.5434 23 6 -0.4291 6.1928 6.7424 24 1 0.6318 6.0674 6.9585 25 6 -1.2545 5.6467 7.8787 26 6 -2.5643 6.0606 8.0675 27 6 -3.2920 5.5347 9.1182 28 7 -2.7513 4.6572 9.9407 29 6 -1.5075 4.2443 9.7943 30 6 -0.7205 4.7227 8.7638 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 5.0487 3.4033 -0.7829 37 1 3.1616 2.7641 1.0860 38 1 2.7254 1.2833 1.9721 39 1 0.3540 2.0068 2.0140 40 1 0.7901 3.4876 1.1278 41 1 2.3016 4.1495 2.9794 42 1 1.8650 2.6684 3.8649 43 1 -0.5101 4.0587 3.2294 44 1 -0.8761 6.4286 3.4744 45 1 -2.3470 6.6598 4.4766 46 1 0.4218 7.9392 4.8312 47 1 -1.1813 8.7391 4.8529 48 1 -3.0114 6.7822 7.3998 49 1 -4.3139 5.8495 9.2701 50 1 -1.0991 3.5240 10.4877 51 1 0.2976 4.3810 8.6494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707452722.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:02 Heat of formation + Delta-G solvation = -33.995903 kcal Electronic energy + Delta-G solvation = -30446.394829 eV Core-core repulsion = 26346.073876 eV Total energy + Delta-G solvation = -4100.320953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.15976 -39.96733 -38.55500 -36.50329 -34.93231 -33.60050 -32.82199 -31.90893 -31.46992 -31.06255 -29.06257 -28.53646 -25.72330 -24.48821 -23.83201 -23.48854 -22.65086 -21.78508 -21.13301 -20.39784 -19.84088 -17.93612 -17.40396 -16.79802 -16.57451 -16.18053 -15.96782 -15.72163 -15.30217 -15.07731 -14.96947 -14.81053 -14.18516 -14.15601 -13.90426 -13.85810 -13.61708 -13.43822 -13.27841 -12.68850 -12.43503 -12.30509 -12.23074 -11.94329 -11.70204 -11.60791 -11.51198 -11.44399 -11.21181 -11.07833 -10.81529 -10.64614 -10.50497 -10.28427 -10.12633 -10.00833 -9.75877 -9.73163 -9.61883 -9.57236 -9.42333 -8.99058 -8.52340 -6.61799 -5.83349 -3.42895 0.86261 0.89117 2.49105 3.05167 3.30660 3.33951 3.39181 3.39996 3.68450 4.01147 4.13008 4.19662 4.42004 4.44966 4.52247 4.60064 4.76284 4.85375 4.90291 4.92611 5.05702 5.18702 5.31380 5.33993 5.35905 5.39865 5.45991 5.53498 5.56646 5.58863 5.69819 5.76364 5.91374 6.01751 6.03649 6.20586 6.29348 6.35809 6.38789 6.40917 6.45736 6.52512 6.67269 6.69825 6.86669 7.02667 7.12205 7.47374 7.61821 7.68404 7.77851 8.13228 8.47659 9.14907 9.77046 10.36035 11.16147 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.002241 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.109478 B =12490.385755 C =13475.085379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.260 4.260 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.119 3.881 15 N -0.720 5.720 16 C 0.517 3.483 17 O -0.538 6.538 18 C -0.138 4.138 19 H 0.112 0.888 20 C -0.146 4.146 21 C 0.046 3.954 22 O -0.365 6.365 23 C 0.125 3.875 24 H 0.110 0.890 25 C -0.042 4.042 26 C -0.149 4.149 27 C 0.093 3.907 28 N -0.486 5.486 29 C 0.097 3.903 30 C -0.158 4.158 31 H 0.035 0.965 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.255 0.745 37 H 0.095 0.905 38 H 0.025 0.975 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.400 0.600 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.100 0.900 48 H 0.138 0.862 49 H 0.156 0.844 50 H 0.158 0.842 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.108 6.484 15.323 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.390 4.390 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.203 1.203 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.004 4.004 15 N -0.370 5.370 16 C 0.302 3.698 17 O -0.415 6.415 18 C -0.160 4.160 19 H 0.130 0.870 20 C -0.184 4.184 21 C -0.031 4.031 22 O -0.283 6.283 23 C 0.067 3.933 24 H 0.127 0.873 25 C -0.050 4.050 26 C -0.169 4.169 27 C -0.063 4.063 28 N -0.195 5.195 29 C -0.059 4.059 30 C -0.178 4.178 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.113 0.887 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.234 0.766 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.085 0.915 47 H 0.118 0.882 48 H 0.155 0.845 49 H 0.173 0.827 50 H 0.175 0.825 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.685 6.376 16.557 22.408 hybrid contribution 0.035 0.901 -1.839 2.048 sum -13.650 7.278 14.719 21.353 Atomic orbital electron populations 1.22365 1.00169 0.98918 1.01056 1.20849 0.91660 0.87386 0.98754 1.43748 1.76044 1.08194 1.02488 1.18991 1.04666 1.21191 0.94167 0.92293 1.25198 0.94199 1.01326 0.98078 1.69996 1.03190 1.37200 1.42432 0.86409 0.76999 0.82571 0.81501 1.21340 1.21698 1.20271 1.20793 0.94382 0.96666 0.85800 1.22547 1.02471 0.99889 0.93785 1.21538 0.86909 0.96178 0.95752 1.46156 1.14741 1.53189 1.22927 1.20154 0.89453 0.78952 0.81256 1.90695 1.30017 1.61241 1.59585 1.22686 0.98008 0.99329 0.96005 0.86996 1.23210 1.02336 0.93457 0.99431 1.23607 1.00992 0.98015 0.80440 1.88953 1.91391 1.23883 1.24120 1.21666 0.99775 0.81208 0.90654 0.87258 1.20193 0.94304 0.95245 0.95286 1.22003 0.94414 1.00805 0.99693 1.22780 1.00024 0.92760 0.90768 1.67669 1.12776 1.11590 1.27496 1.22760 0.89549 0.97623 0.95989 1.22086 1.01999 0.98166 0.95520 0.94606 0.93862 0.93267 0.93856 0.94838 0.93474 0.88727 0.95665 0.93044 0.91702 0.91363 0.91850 0.76650 0.89033 0.89128 0.91472 0.88169 0.84457 0.82702 0.82509 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 10.21 37.15 0.38 -2.48 16 2 C 0.14 2.85 6.44 -4.04 -0.03 2.83 16 3 N -0.58 -13.81 2.43 -173.24 -0.42 -14.23 16 4 C -0.26 -6.80 9.45 -15.06 -0.14 -6.95 16 5 H 0.06 1.55 7.92 -52.48 -0.42 1.14 16 6 C 0.01 0.33 4.95 -17.43 -0.09 0.25 16 7 N -0.89 -24.76 11.47 55.49 0.64 -24.13 16 8 Si 0.90 20.85 29.60 -169.99 -5.03 15.81 16 9 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.15 3.29 5.33 -4.04 -0.02 3.27 16 13 C -0.15 -2.55 5.65 -26.73 -0.15 -2.70 16 14 C 0.12 1.86 5.67 -4.04 -0.02 1.84 16 15 N -0.72 -9.00 5.32 -60.29 -0.32 -9.32 16 16 C 0.52 6.68 7.08 -10.99 -0.08 6.60 16 17 O -0.54 -8.92 15.26 5.55 0.08 -8.84 16 18 C -0.14 -1.33 3.05 -90.24 -0.28 -1.60 16 19 H 0.11 0.94 7.69 -51.93 -0.40 0.54 16 20 C -0.15 -1.12 6.69 -24.72 -0.17 -1.29 16 21 C 0.05 0.40 7.72 38.21 0.29 0.69 16 22 O -0.36 -3.96 10.55 -35.23 -0.37 -4.33 16 23 C 0.12 1.34 3.30 -27.31 -0.09 1.25 16 24 H 0.11 1.40 6.36 -51.93 -0.33 1.07 16 25 C -0.04 -0.43 4.80 -104.32 -0.50 -0.93 16 26 C -0.15 -1.35 9.46 -39.44 -0.37 -1.72 16 27 C 0.09 0.84 11.18 -17.55 -0.20 0.65 16 28 N -0.49 -5.18 10.36 -13.25 -0.14 -5.32 16 29 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 30 C -0.16 -1.55 9.80 -39.44 -0.39 -1.94 16 31 H 0.03 0.53 8.14 -51.92 -0.42 0.10 16 32 H 0.04 0.72 6.64 -51.93 -0.34 0.37 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.03 0.64 7.83 -51.93 -0.41 0.24 16 36 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.10 2.38 5.52 -51.93 -0.29 2.09 16 38 H 0.02 0.53 7.86 -51.93 -0.41 0.12 16 39 H 0.05 0.84 6.64 -51.93 -0.34 0.50 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.40 4.02 8.47 -40.82 -0.35 3.67 16 44 H 0.09 0.70 7.68 -51.93 -0.40 0.30 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.14 1.04 7.80 -52.49 -0.41 0.63 16 49 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 50 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 51 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 414.42 15.07 6.25 6.25 Total: -1.00 -31.55 414.42 -9.65 -41.20 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -8.30 Total: 4.39 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.04 Total: -1.49 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.24 Total: -52.99 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.29 Total: -13.17 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.55 -9.65 -41.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707452722.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.201 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds