Wall clock time and date at job start Wed Apr 1 2020 05:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.46821 * 2 1 4 4 C 1.36932 * 120.00265 * 275.30946 * 3 2 1 5 5 H 1.08006 * 119.99698 * 37.57784 * 4 3 2 6 6 C 1.38811 * 120.00066 * 217.58142 * 4 3 2 7 7 N 1.31620 * 120.00381 * 21.42674 * 6 4 3 8 8 Si 1.86801 * 119.99863 * 201.42330 * 6 4 3 9 9 H 1.48510 * 109.47015 * 90.00123 * 8 6 4 10 10 H 1.48494 * 109.47316 * 209.99967 * 8 6 4 11 11 H 1.48500 * 109.47109 * 330.00036 * 8 6 4 12 12 C 1.46500 * 119.99848 * 95.31387 * 3 2 1 13 13 C 1.53004 * 109.46892 * 269.99747 * 12 3 2 14 14 C 1.53000 * 109.47002 * 179.97438 * 13 12 3 15 15 N 1.46497 * 109.47066 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00248 * 180.02562 * 15 14 13 17 17 O 1.21286 * 119.99999 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00413 * 180.02562 * 16 15 14 19 19 H 1.08994 * 110.43547 * 59.29398 * 18 16 15 20 20 C 1.54813 * 110.48518 * 296.75180 * 18 16 15 21 21 C 1.54995 * 102.09085 * 262.07242 * 20 18 16 22 22 O 1.44380 * 103.49239 * 322.97298 * 21 20 18 23 23 C 1.44052 * 106.97866 * 40.14167 * 22 21 20 24 24 H 1.08998 * 109.98733 * 92.76760 * 23 22 21 25 25 C 1.50695 * 109.92832 * 214.02515 * 23 22 21 26 26 C 1.38656 * 120.79102 * 37.38351 * 25 23 22 27 27 C 1.38207 * 119.16198 * 179.80024 * 26 25 23 28 28 N 1.31869 * 120.76284 * 0.48812 * 27 26 25 29 29 C 1.31868 * 121.72888 * 359.73866 * 28 27 26 30 30 C 1.38209 * 120.76321 * 0.02779 * 29 28 27 31 31 H 1.09008 * 109.46926 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47278 * 299.99738 * 1 2 3 33 33 H 1.08995 * 109.47522 * 60.00275 * 1 2 3 34 34 H 1.08996 * 109.47278 * 240.00262 * 2 1 3 35 35 H 1.08995 * 109.47522 * 119.99725 * 2 1 3 36 36 H 0.96993 * 120.00265 * 180.02562 * 7 6 4 37 37 H 1.08997 * 109.47194 * 149.99591 * 12 3 2 38 38 H 1.09001 * 109.47298 * 29.99747 * 12 3 2 39 39 H 1.08997 * 109.47268 * 60.00479 * 13 12 3 40 40 H 1.09001 * 109.47149 * 300.00091 * 13 12 3 41 41 H 1.09007 * 109.47206 * 59.99916 * 14 13 12 42 42 H 1.09001 * 109.47270 * 300.00050 * 14 13 12 43 43 H 0.97006 * 119.99922 * 0.02562 * 15 14 13 44 44 H 1.09006 * 110.90904 * 20.26788 * 20 18 16 45 45 H 1.09000 * 110.90759 * 143.87027 * 20 18 16 46 46 H 1.08992 * 110.62172 * 81.48020 * 21 20 18 47 47 H 1.09005 * 110.61423 * 204.31940 * 21 20 18 48 48 H 1.07999 * 120.41765 * 0.02562 * 26 25 23 49 49 H 1.07997 * 119.61605 * 180.20525 * 27 26 25 50 50 H 1.08001 * 119.61947 * 180.02562 * 29 28 27 51 51 H 1.07998 * 120.41602 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1430 2.0634 -1.1807 5 1 1.4103 1.9279 -1.9627 6 6 3.2110 2.9290 -1.3727 7 7 4.3026 2.7982 -0.6490 8 14 3.0991 4.2796 -2.6584 9 1 2.5373 5.5071 -2.0393 10 1 4.4547 4.5697 -3.1908 11 1 2.2164 3.8358 -3.7670 12 6 2.3731 2.0327 1.2633 13 6 1.1424 2.7382 1.8366 14 6 1.5129 3.4180 3.1563 15 7 0.3347 4.0941 3.7049 16 6 0.4245 4.7651 4.8703 17 8 1.4806 4.8090 5.4651 18 6 -0.7876 5.4601 5.4350 19 1 -1.5912 4.7441 5.6069 20 6 -1.2595 6.5858 4.4827 21 6 -0.6230 7.8438 5.1265 22 8 -0.7295 7.5876 6.5434 23 6 -0.4291 6.1928 6.7424 24 1 0.6318 6.0674 6.9585 25 6 -1.2545 5.6467 7.8787 26 6 -2.5643 6.0606 8.0675 27 6 -3.2920 5.5347 9.1182 28 7 -2.7513 4.6572 9.9407 29 6 -1.5075 4.2443 9.7943 30 6 -0.7205 4.7227 8.7638 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 5.0487 3.4033 -0.7829 37 1 3.1616 2.7641 1.0860 38 1 2.7254 1.2833 1.9721 39 1 0.3540 2.0068 2.0140 40 1 0.7901 3.4876 1.1278 41 1 2.3016 4.1495 2.9794 42 1 1.8650 2.6684 3.8649 43 1 -0.5101 4.0587 3.2294 44 1 -0.8761 6.4286 3.4744 45 1 -2.3470 6.6598 4.4766 46 1 0.4218 7.9392 4.8312 47 1 -1.1813 8.7391 4.8529 48 1 -3.0114 6.7822 7.3998 49 1 -4.3139 5.8495 9.2701 50 1 -1.0991 3.5240 10.4877 51 1 0.2976 4.3810 8.6494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707452722.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:01 Heat of formation + Delta-G solvation = -53.371157 kcal Electronic energy + Delta-G solvation = -30447.235003 eV Core-core repulsion = 26346.073876 eV Total energy + Delta-G solvation = -4101.161127 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.99274 -40.79922 -39.48609 -38.17161 -36.25992 -34.35540 -33.85927 -33.68573 -32.36673 -32.14579 -30.24611 -29.73170 -27.25760 -25.77898 -24.84219 -24.45101 -23.41278 -22.72744 -22.45968 -22.01007 -20.98953 -18.78426 -18.62983 -18.19103 -17.34784 -17.27401 -17.02912 -16.74238 -16.51185 -16.21523 -16.08635 -15.74305 -15.61410 -15.40338 -14.96292 -14.88797 -14.67647 -14.49930 -14.26729 -14.06976 -14.01953 -13.28104 -13.20601 -13.13966 -12.94906 -12.74618 -12.72428 -12.61773 -12.56662 -12.39475 -12.26739 -12.17720 -12.13101 -11.92519 -11.46944 -11.25884 -11.12677 -10.95027 -10.50210 -10.46942 -10.46741 -10.17410 -10.10438 -8.54969 -7.80822 -5.45250 0.15124 0.18739 1.45367 1.46492 1.48013 1.56086 2.01919 2.51029 2.61264 2.95072 3.24068 3.27772 3.35523 3.58318 3.60858 3.66652 3.85579 3.93961 3.96001 4.14264 4.18246 4.19848 4.25782 4.31381 4.34235 4.44779 4.53638 4.63925 4.70704 4.72872 4.76171 4.76736 4.79785 4.88529 4.89719 4.95100 4.99342 5.00157 5.04033 5.16171 5.32552 5.33752 5.38308 5.45803 5.60412 5.70002 5.70718 5.73833 5.84400 6.45330 6.48288 6.99264 7.11708 7.19139 7.88764 8.41387 9.13816 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.002241 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.109478 B =12490.385755 C =13475.085379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 N -0.602 5.602 4 C -0.261 4.261 5 H 0.056 0.944 6 C -0.037 4.037 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.283 1.283 10 H -0.298 1.298 11 H -0.269 1.269 12 C 0.150 3.850 13 C -0.122 4.122 14 C 0.133 3.867 15 N -0.709 5.709 16 C 0.516 3.484 17 O -0.579 6.579 18 C -0.128 4.128 19 H 0.133 0.867 20 C -0.138 4.138 21 C 0.039 3.961 22 O -0.376 6.376 23 C 0.127 3.873 24 H 0.081 0.919 25 C -0.053 4.053 26 C -0.146 4.146 27 C 0.091 3.909 28 N -0.508 5.508 29 C 0.092 3.908 30 C -0.170 4.170 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.036 0.964 34 H 0.028 0.972 35 H 0.044 0.956 36 H 0.250 0.750 37 H 0.059 0.941 38 H 0.026 0.974 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.060 0.940 43 H 0.415 0.585 44 H 0.093 0.907 45 H 0.121 0.879 46 H 0.049 0.951 47 H 0.126 0.874 48 H 0.155 0.845 49 H 0.183 0.817 50 H 0.176 0.824 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.367 6.858 15.381 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.392 4.392 5 H 0.073 0.927 6 C -0.234 4.234 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.209 1.209 10 H -0.225 1.225 11 H -0.193 1.193 12 C 0.023 3.977 13 C -0.162 4.162 14 C 0.008 3.992 15 N -0.361 5.361 16 C 0.303 3.697 17 O -0.460 6.460 18 C -0.149 4.149 19 H 0.151 0.849 20 C -0.175 4.175 21 C -0.037 4.037 22 O -0.295 6.295 23 C 0.069 3.931 24 H 0.098 0.902 25 C -0.061 4.061 26 C -0.166 4.166 27 C -0.066 4.066 28 N -0.218 5.218 29 C -0.064 4.064 30 C -0.189 4.189 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.252 0.748 44 H 0.112 0.888 45 H 0.140 0.860 46 H 0.067 0.933 47 H 0.144 0.856 48 H 0.173 0.827 49 H 0.200 0.800 50 H 0.193 0.807 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.997 6.739 16.606 24.700 hybrid contribution 1.082 0.732 -1.818 2.239 sum -15.915 7.471 14.787 22.973 Atomic orbital electron populations 1.22162 0.97159 1.00769 1.00887 1.20998 0.93915 0.85724 0.98551 1.43998 1.76457 1.09542 1.02312 1.19180 1.04048 1.21113 0.94851 0.92671 1.25860 0.93999 1.03398 1.00162 1.70132 1.03813 1.38042 1.44304 0.85478 0.76505 0.80158 0.79595 1.20940 1.22456 1.19332 1.20702 0.95380 0.96089 0.85530 1.22158 1.00601 0.99573 0.93879 1.21154 0.87512 0.95545 0.94961 1.45934 1.14421 1.52726 1.22974 1.20751 0.89993 0.78291 0.80682 1.90688 1.32003 1.62574 1.60694 1.22645 0.96551 0.99971 0.95748 0.84943 1.23268 1.04063 0.91546 0.98660 1.23785 1.00640 0.99769 0.79555 1.88944 1.91224 1.23814 1.25497 1.21489 0.98427 0.81609 0.91565 0.90161 1.20246 0.94976 0.95628 0.95291 1.22174 0.93759 1.00751 0.99899 1.23256 1.01141 0.91989 0.90198 1.67719 1.13229 1.12501 1.28349 1.23065 0.89389 0.97832 0.96139 1.22173 1.02155 0.98632 0.95982 0.91741 0.92927 0.94435 0.95365 0.93805 0.94043 0.92267 0.95559 0.91132 0.92733 0.93708 0.92209 0.74785 0.88813 0.86040 0.93279 0.85578 0.82688 0.80047 0.80702 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.81 10.21 71.98 0.73 -4.07 16 2 C 0.13 5.31 6.44 86.38 0.56 5.87 16 3 N -0.60 -28.38 2.43 -702.01 -1.71 -30.09 16 4 C -0.26 -13.70 9.45 84.03 0.79 -12.90 16 5 H 0.06 2.89 7.92 -2.91 -0.02 2.87 16 6 C -0.04 -1.98 4.95 84.86 0.42 -1.56 16 7 N -0.92 -52.76 11.47 21.65 0.25 -52.52 16 8 Si 0.95 43.21 29.60 68.60 2.03 45.24 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 12 C 0.15 6.60 5.33 86.38 0.46 7.06 16 13 C -0.12 -4.14 5.65 30.60 0.17 -3.96 16 14 C 0.13 4.12 5.67 86.38 0.49 4.61 16 15 N -0.71 -16.83 5.32 -463.05 -2.47 -19.29 16 16 C 0.52 13.02 7.08 87.66 0.62 13.64 16 17 O -0.58 -19.76 15.26 -3.05 -0.05 -19.81 16 18 C -0.13 -2.22 3.05 -10.55 -0.03 -2.25 16 19 H 0.13 1.81 7.69 -2.39 -0.02 1.80 16 20 C -0.14 -1.71 6.69 31.90 0.21 -1.50 16 21 C 0.04 0.60 7.72 72.66 0.56 1.16 16 22 O -0.38 -7.70 10.55 -148.98 -1.57 -9.27 16 23 C 0.13 2.67 3.30 30.22 0.10 2.77 16 24 H 0.08 2.16 6.36 -2.39 -0.02 2.14 16 25 C -0.05 -1.03 4.80 -19.67 -0.09 -1.12 16 26 C -0.15 -2.31 9.46 22.36 0.21 -2.09 16 27 C 0.09 1.43 11.18 84.68 0.95 2.38 16 28 N -0.51 -10.07 10.36 -195.84 -2.03 -12.10 16 29 C 0.09 1.67 11.18 84.68 0.95 2.62 16 30 C -0.17 -3.29 9.80 22.36 0.22 -3.07 16 31 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.05 1.57 6.64 -2.39 -0.02 1.56 16 33 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 34 H 0.03 1.18 8.08 -2.39 -0.02 1.16 16 35 H 0.04 1.63 7.83 -2.39 -0.02 1.61 16 36 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 37 H 0.06 3.08 5.52 -2.39 -0.01 3.07 16 38 H 0.03 1.12 7.86 -2.39 -0.02 1.10 16 39 H 0.07 2.14 6.64 -2.39 -0.02 2.12 16 40 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.42 7.29 8.47 -92.70 -0.79 6.50 16 44 H 0.09 1.17 7.68 -2.38 -0.02 1.15 16 45 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 48 H 0.16 1.83 7.80 -2.91 -0.02 1.81 16 49 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 50 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 51 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -69.94 414.42 1.92 -68.02 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.14 Total: 22.25 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 7.32 Total: 7.57 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -5.95 Total: -114.01 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -1.62 Total: -29.08 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -69.94 1.92 -68.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707452722.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.652 kcal (2) G-P(sol) polarization free energy of solvation -69.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds