Wall clock time and date at job start Wed Apr 1 2020 05:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47241 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47303 * 119.99759 * 9 7 5 12 12 H 1.48495 * 109.47340 * 239.99921 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.47480 * 111.00171 * 265.96874 * 16 15 13 18 18 C 1.53513 * 87.93170 * 221.29782 * 17 16 15 19 19 C 1.53000 * 114.34164 * 139.68416 * 18 17 16 20 20 N 1.46495 * 109.47256 * 91.07516 * 19 18 17 21 21 C 1.34777 * 120.00419 * 179.97438 * 20 19 18 22 22 O 1.21619 * 119.99610 * 0.02562 * 21 20 19 23 23 C 1.43203 * 120.00304 * 179.97438 * 21 20 19 24 24 C 9.68517 * 134.68721 * 279.65659 * 13 1 2 25 25 C 9.07868 * 152.50376 * 319.64810 * 16 1 2 26 26 C 1.53006 * 117.49304 * 143.63344 * 25 24 23 27 27 C 1.52999 * 117.49641 * 74.97890 * 25 24 23 28 28 C 1.47482 * 110.99764 * 169.99672 * 16 15 13 29 29 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 30 30 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 31 31 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 33 33 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 34 34 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 35 35 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 36 36 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 38 38 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 39 39 H 1.08999 * 113.47664 * 336.06792 * 17 16 15 40 40 H 1.08994 * 113.47488 * 106.52987 * 17 16 15 41 41 H 1.08999 * 114.16922 * 272.37539 * 18 17 16 42 42 H 1.09003 * 109.47227 * 211.07946 * 19 18 17 43 43 H 1.09002 * 109.47568 * 331.07706 * 19 18 17 44 44 H 0.97004 * 120.00264 * 0.02562 * 20 19 18 45 45 H 1.08992 * 115.55071 * 289.29913 * 25 24 23 46 46 H 1.08992 * 117.50065 * 359.97438 * 26 25 24 47 47 H 1.09006 * 117.49342 * 145.02037 * 26 25 24 48 48 H 1.09008 * 117.49500 * 214.97766 * 27 25 24 49 49 H 1.08994 * 117.50092 * 359.96786 * 27 25 24 50 50 H 1.08994 * 113.48196 * 253.46980 * 28 16 15 51 51 H 1.09003 * 113.47819 * 23.94188 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.6009 1.2405 -2.4169 11 1 5.9202 1.4163 -4.7380 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 3.6958 2.0024 4.0530 18 6 3.1733 2.1272 5.4910 19 6 3.8047 1.1443 6.4790 20 7 4.9834 1.7595 7.0940 21 6 5.7042 1.0741 8.0035 22 8 5.3763 -0.0553 8.3133 23 6 6.8568 1.6753 8.6043 24 6 7.7986 2.1694 9.0990 25 6 8.9846 2.7864 9.7164 26 6 9.3484 4.2076 9.2819 27 6 10.2034 3.0239 8.8225 28 6 1.8567 1.6375 4.8718 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5818 1.6876 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 3.6747 3.5148 -4.4447 37 1 0.9443 1.0114 2.5302 38 1 2.6227 0.4186 2.5299 39 1 4.0915 1.0140 3.8190 40 1 4.3727 2.8069 3.7655 41 1 3.1371 3.1503 5.8655 42 1 3.0805 0.8922 7.2537 43 1 4.1017 0.2384 5.9507 44 1 5.2448 2.6605 6.8473 45 1 9.1680 2.5154 10.7560 46 1 8.7101 4.6856 8.5388 47 1 9.7716 4.8715 10.0358 48 1 11.1888 2.9096 9.2743 49 1 10.1275 2.7231 7.7777 50 1 0.9750 2.1328 5.2783 51 1 1.7616 0.5517 4.8564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713900873.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:14 Heat of formation + Delta-G solvation = 49.894332 kcal Electronic energy + Delta-G solvation = -29101.729077 eV Core-core repulsion = 25005.045878 eV Total energy + Delta-G solvation = -4096.683199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.71665 -39.73543 -38.55688 -38.09544 -35.28334 -35.06189 -33.20148 -32.83048 -31.28932 -30.06619 -28.29649 -26.74471 -26.08077 -25.06933 -23.59974 -22.99252 -22.98891 -22.19587 -21.74488 -20.27035 -18.99077 -18.22504 -17.09976 -16.73251 -16.64070 -16.34390 -15.89121 -15.85347 -15.60013 -15.40293 -14.98081 -14.86904 -14.36705 -13.97631 -13.80831 -13.37546 -13.20304 -13.10048 -13.03099 -12.77286 -12.49166 -12.27227 -12.11913 -12.01584 -11.92132 -11.85307 -11.59409 -11.47476 -11.24505 -11.01829 -10.89435 -10.79438 -10.71062 -10.60431 -10.54082 -10.52671 -10.21215 -10.12106 -9.60486 -9.48726 -9.11161 -8.59209 -8.43305 -7.61893 -6.03707 -4.08261 1.13770 1.82111 2.65903 2.98372 3.29058 3.36307 3.39564 3.48751 3.50896 3.63655 3.66124 4.09738 4.19060 4.20093 4.37060 4.43703 4.45732 4.48960 4.87010 4.95283 4.97907 5.05642 5.08518 5.16387 5.20798 5.26453 5.29419 5.30826 5.35866 5.39856 5.44987 5.47733 5.50279 5.54752 5.63581 5.76129 5.78108 5.87848 6.01156 6.05778 6.22975 6.26135 6.47665 6.80711 6.85735 7.03778 7.13607 7.47649 7.58956 7.74324 7.93465 8.25104 8.47239 8.92440 9.17600 9.56942 11.04305 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.002023 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.806778 B =13839.388270 C =16098.030917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.508 3.492 14 O -0.522 6.522 15 C -0.001 4.001 16 N -0.445 5.445 17 C 0.007 3.993 18 C -0.131 4.131 19 C 0.131 3.869 20 N -0.714 5.714 21 C 0.635 3.365 22 O -0.525 6.525 23 C -0.220 4.220 24 C -0.049 4.049 25 C -0.069 4.069 26 C -0.159 4.159 27 C -0.159 4.159 28 C 0.007 3.993 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.262 0.738 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.407 0.593 45 H 0.136 0.864 46 H 0.102 0.898 47 H 0.109 0.891 48 H 0.109 0.891 49 H 0.102 0.898 50 H 0.091 0.909 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.967 -3.309 25.280 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.397 6.397 15 C -0.133 4.133 16 N -0.166 5.166 17 C -0.122 4.122 18 C -0.151 4.151 19 C 0.008 3.992 20 N -0.365 5.365 21 C 0.421 3.579 22 O -0.402 6.402 23 C -0.223 4.223 24 C -0.051 4.051 25 C -0.087 4.087 26 C -0.196 4.196 27 C -0.195 4.195 28 C -0.123 4.123 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.130 0.870 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.242 0.758 45 H 0.153 0.847 46 H 0.121 0.879 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.121 0.879 50 H 0.109 0.891 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.653 -2.756 25.003 25.419 hybrid contribution 1.244 -0.738 -0.456 1.517 sum 4.897 -3.494 24.547 25.274 Atomic orbital electron populations 1.22227 0.96845 1.01331 1.02353 1.21388 0.93479 0.84405 1.02463 1.48266 1.64328 1.13158 1.07716 1.19243 0.96154 0.93660 0.78137 1.21469 0.96960 1.31699 1.06129 0.92565 1.24942 0.97819 0.94995 0.96453 1.69945 1.35539 1.33584 1.14294 0.86456 0.84713 0.78028 0.78292 1.19876 1.20975 1.20886 1.20019 0.79029 0.87089 0.84519 1.90668 1.44541 1.17666 1.86827 1.22737 1.02730 0.95047 0.92745 1.68836 1.06442 1.41088 1.00256 1.24019 0.93422 1.02091 0.92690 1.23021 0.97183 1.00511 0.94338 1.21455 0.86187 0.95866 0.95714 1.45825 1.29114 1.19321 1.42244 1.14624 0.80001 0.84450 0.78807 1.90872 1.69410 1.17787 1.62119 1.20539 0.97412 1.01652 1.02708 1.21347 0.92814 0.96028 0.94907 1.18958 0.90582 0.99693 0.99471 1.23143 1.02759 0.89833 1.03827 1.23138 0.94505 1.01581 1.00315 1.23834 0.97822 0.99269 0.91328 0.93132 0.91976 0.92231 0.89991 0.92101 0.95095 0.93925 0.92804 0.88579 0.91392 0.91072 0.89051 0.87048 0.90456 0.90726 0.75806 0.84657 0.87909 0.87275 0.87254 0.87929 0.89083 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.11 1.69 5.93 -4.05 -0.02 1.67 16 3 N -0.60 -12.68 2.46 -175.06 -0.43 -13.11 16 4 C 0.25 6.50 5.16 -5.19 -0.03 6.47 16 5 C -0.52 -14.91 9.39 -34.44 -0.32 -15.23 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 9 Si 0.90 21.96 29.54 -169.99 -5.02 16.93 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.51 10.62 7.74 -10.98 -0.09 10.53 16 14 O -0.52 -13.42 16.01 5.56 0.09 -13.33 16 15 C 0.00 -0.01 3.85 -4.97 -0.02 -0.03 16 16 N -0.44 -6.22 5.82 -246.07 -1.43 -7.66 16 17 C 0.01 0.08 7.29 -7.54 -0.05 0.03 16 18 C -0.13 -1.14 4.08 -90.09 -0.37 -1.51 16 19 C 0.13 1.11 5.59 -4.04 -0.02 1.08 16 20 N -0.71 -6.25 5.55 -62.77 -0.35 -6.60 16 21 C 0.63 7.35 7.65 -14.33 -0.11 7.24 16 22 O -0.52 -7.92 17.09 5.26 0.09 -7.83 16 23 C -0.22 -2.33 13.61 -38.85 -0.53 -2.86 16 24 C -0.05 -0.43 13.47 -37.11 -0.50 -0.93 16 25 C -0.07 -0.40 6.22 -93.38 -0.58 -0.98 16 26 C -0.16 -0.68 10.21 -26.69 -0.27 -0.95 16 27 C -0.16 -0.73 10.21 -26.69 -0.27 -1.00 16 28 C 0.01 0.07 7.26 -7.54 -0.05 0.01 16 29 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.10 1.21 7.13 -51.93 -0.37 0.84 16 38 H 0.07 0.88 6.56 -51.93 -0.34 0.54 16 39 H 0.07 0.82 7.16 -51.93 -0.37 0.45 16 40 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 44 H 0.41 2.75 8.44 -40.82 -0.34 2.40 16 45 H 0.14 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.11 0.32 8.14 -51.92 -0.42 -0.10 16 49 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 LS Contribution 432.31 15.07 6.51 6.51 Total: -1.00 -37.21 432.31 -11.13 -48.34 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.37 Total: -0.57 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -2.96 Total: 3.30 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -1.47 Total: -53.36 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.18 Total: -21.16 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.51 Total: 6.51 kcal Total: -37.21 -11.13 -48.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713900873.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.231 kcal (2) G-P(sol) polarization free energy of solvation -37.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds